DY305809

Overview
NameDY305809
Unique NameDY305809
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6750 contig Csv1_Contig6750:1..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY305809 vs. ExPASy Swiss-Prot
Match: RBM42_BOVIN (RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.792e-17
Identity = 43/71 (60.56%), Postives = 52/71 (73.24%), Query Frame = 2 
Query:  116 EHKAETKKKSIPRK-------AAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 307
            E  +E KKK  P K       AAG +WEDP+L EW  +D+R+FCGDLGNEVNDD+L++AFSRFPSF  AKV
Sbjct:  310 EPLSEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKV 380

HSP 2 Score: 88.9669 bits (219), Expect = 3.993e-17
Identity = 38/53 (71.70%), Postives = 48/53 (90.57%), Query Frame = 2 
Query:  524 SQVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQER 682
            ++V+RDKRTGKTKGYGF+SF +PSD   A++EMNGKYVG+RPIKLRKS W++R
Sbjct:  378 AKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDR 430
[Close]
BLAST of DY305809 vs. ExPASy Swiss-Prot
Match: RBM42_RAT (RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm42 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.341e-17
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 2 
Query:  116 EHKAETKKKSIPRK-------AAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 307
            E   E KKK  P K       AAG +WEDP+L EW  +D+R+FCGDLGNEVNDD+L++AFSRFPSF  AKV
Sbjct:  336 EPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKV 406

HSP 2 Score: 88.9669 bits (219), Expect = 3.993e-17
Identity = 38/53 (71.70%), Postives = 48/53 (90.57%), Query Frame = 2 
Query:  524 SQVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQER 682
            ++V+RDKRTGKTKGYGF+SF +PSD   A++EMNGKYVG+RPIKLRKS W++R
Sbjct:  404 AKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDR 456
[Close]
BLAST of DY305809 vs. ExPASy Swiss-Prot
Match: RBM42_MOUSE (RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.341e-17
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 2 
Query:  116 EHKAETKKKSIPRK-------AAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 307
            E   E KKK  P K       AAG +WEDP+L EW  +D+R+FCGDLGNEVNDD+L++AFSRFPSF  AKV
Sbjct:  336 EPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKV 406

HSP 2 Score: 88.9669 bits (219), Expect = 3.993e-17
Identity = 38/53 (71.70%), Postives = 48/53 (90.57%), Query Frame = 2 
Query:  524 SQVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQER 682
            ++V+RDKRTGKTKGYGF+SF +PSD   A++EMNGKYVG+RPIKLRKS W++R
Sbjct:  404 AKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDR 456
[Close]
BLAST of DY305809 vs. ExPASy Swiss-Prot
Match: RBM42_HUMAN (RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.341e-17
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 2 
Query:  116 EHKAETKKKSIPRK-------AAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 307
            E   E KKK  P K       AAG +WEDP+L EW  +D+R+FCGDLGNEVNDD+L++AFSRFPSF  AKV
Sbjct:  342 EPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKV 412

HSP 2 Score: 88.9669 bits (219), Expect = 3.993e-17
Identity = 38/53 (71.70%), Postives = 48/53 (90.57%), Query Frame = 2 
Query:  524 SQVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQER 682
            ++V+RDKRTGKTKGYGF+SF +PSD   A++EMNGKYVG+RPIKLRKS W++R
Sbjct:  410 AKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDR 462
[Close]
BLAST of DY305809 vs. ExPASy Swiss-Prot
Match: RBM42_XENTR (RNA-binding protein 42 OS=Xenopus tropicalis GN=rbm42 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.215e-17
Identity = 37/53 (69.81%), Postives = 49/53 (92.45%), Query Frame = 2 
Query:  524 SQVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQER 682
            ++V+RDKRTGKTKGYGF+SF +P+D   A++EMNGKYVG+RPIKLRKS+W++R
Sbjct:  322 AKVIRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGKYVGSRPIKLRKSQWKDR 374

HSP 2 Score: 86.2705 bits (212), Expect = 2.588e-16
Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 2 
Query:  113 IEHKAETKKKSIPRK-------AAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 307
            +E   E KKK+ P K       AAG +WED +L EW  +D+R+FCGDLGNEVNDD+L++AFSR+PSF  AKV
Sbjct:  253 LEPVQEDKKKTKPEKLKRCIRTAAGTSWEDQSLLEWESDDFRIFCGDLGNEVNDDILARAFSRYPSFLRAKV 324
[Close]
BLAST of DY305809 vs. ExPASy Swiss-Prot
Match: RBM42_XENLA (RNA-binding protein 42 OS=Xenopus laevis GN=rbm42 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.162e-16
Identity = 37/53 (69.81%), Postives = 48/53 (90.57%), Query Frame = 2 
Query:  524 SQVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQER 682
            ++V+RDKRTGKTKGYGF+SF +P+D   A +EMNGKYVG+RPIKLRKS+W++R
Sbjct:  322 AKVIRDKRTGKTKGYGFVSFKDPNDYVRATREMNGKYVGSRPIKLRKSQWKDR 374

HSP 2 Score: 87.0409 bits (214), Expect = 1.517e-16
Identity = 42/91 (46.15%), Postives = 59/91 (64.84%), Query Frame = 2 
Query:   56 QTITPEALESVKAALASSDIEHKAETKKKSIPRK-------AAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 307
            +T+   ++  ++       +E   E KKK+ P K       AAG +WED +L EW  +D+R+FCGDLGNEVNDD+L++AFSR+PSF  AKV
Sbjct:  234 ETVIGPSMPEIEPVQPEVVLEPVQEDKKKAKPEKLKRCIRTAAGTSWEDQSLLEWEPDDFRIFCGDLGNEVNDDILARAFSRYPSFLRAKV 324
[Close]
BLAST of DY305809 vs. ExPASy Swiss-Prot
Match: RBM42_DANRE (RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.517e-16
Identity = 37/53 (69.81%), Postives = 48/53 (90.57%), Query Frame = 2 
Query:  524 SQVVRDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQER 682
            ++VVRDKRTGKTKGYGF+SF +P+D   A++EMNG+YVG+RPIKLRKS W++R
Sbjct:  332 AKVVRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGRYVGSRPIKLRKSAWKDR 384

HSP 2 Score: 85.8853 bits (211), Expect = 3.380e-16
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 2 
Query:   68 PEALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 307
            PE +       ++ D +   + K K   R AAG +WED +L EW  +D+R+FCGDLGNEVNDD+L++AFSR+PSF  AKV
Sbjct:  255 PEPVHVEPVDTSTEDKKKGKQEKVKKCIRVAAGVSWEDTSLLEWETDDFRIFCGDLGNEVNDDILARAFSRYPSFLKAKV 334
[Close]
BLAST of DY305809 vs. ExPASy Swiss-Prot
Match: YDB2_SCHPO (Uncharacterized RNA-binding protein C22E12.02 OS=Schizosaccharomyces pombe GN=SPAC22E12.02 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.018e-12
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 2 
Query:  137 KKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 307
            K ++ RKA GQ WEDPTL EW  N +RLF G+LGN+VND+ L +AFS +PS    KV
Sbjct:    5 KTTVVRKAGGQVWEDPTLLEWDPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKV 61
The following BLAST results are available for this feature:
BLAST of DY305809 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
RBM42_BOVIN1.792e-1760.56RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2... [more]
RBM42_RAT2.341e-1760.56RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm... [more]
RBM42_MOUSE2.341e-1760.56RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE... [more]
RBM42_HUMAN2.341e-1760.56RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE... [more]
RBM42_XENTR5.215e-1769.81RNA-binding protein 42 OS=Xenopus tropicalis GN=rb... [more]
RBM42_XENLA1.162e-1669.81RNA-binding protein 42 OS=Xenopus laevis GN=rbm42 ... [more]
RBM42_DANRE1.517e-1669.81RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=... [more]
YDB2_SCHPO1.018e-1257.89Uncharacterized RNA-binding protein C22E12.02 OS=S... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM2BG06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305809 ID=DY305809; Name=DY305809; organism=Citrus sinensis; type=EST; length=887bp
GGTTTACTCTCTCCCCCAATACCACCAGGCTCAACAGTTATTTCAAAGGG
ATGCACAGACGATTACGCCTGAAGCACTTGAGAGTGTGAAAGCTGCACTT
GCAAGCAGTGATATTGAGCACAAAGCAGAAACTAAAAAGAAATCAATACC
TCGTAAAGCAGCTGGGCAGACTTGGGAGGATCCAACGCTTGCAGAGTGGC
CAGAAAATGACTATCGCCTATTCTGCGGTGATCTTGGTAATGAGGTGAAT
GATGATGTTCTTTCTAAAGCATTTTCACGATTTCCTTCCTTTAATATGGC
CAAAGTAAGTTTCTGTTTCACTTGATTACTTCTGTACTTGTATTATAAGC
ATTGTGCACTTGCTGTGAAGTTTTTTATTTCCTCTTCAGATTTTTGTTTG
AAGCGCACAGAGAAGTTATATTATGTTTGTGTACTTTAAGTTGGAATCGA
CATCTGACGCATGAATTGGTTAAATTTTTACCTGATGAATTATAGCAAGG
ATGAGTTGATTTGATCAAGTTGGAGTCAGGTTGTGAGAGATAAGCGCACC
GGCAAAACAAAGGGATATGGGTTTATTAGCTTTGCCAACCCTTCTGATAT
TGCAGCAGCACTTAAAGAAATGAATGGTAAATATGTTGGAAATCGACCTA
TAAAACTGCGGAAGAGCAAGTGGCAAGAGAGGACAGATTTTGAGGCTCTT
GAGAGATCAAAGAATCATAATCAAAAGAAACCAAAGCTTTCTAAGAAGAG
TGTCTTGCACAAATGATTATTGGAATCCTTTAGAACTTATACTTTTGTCA
AGATAATGACCTGAGTTTAGCCATGTTGTAATTTATACATTGCTTTCTTT
ACGTTCTCGATTTATTTGATAATAACTCGTAATTTGT
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