DY305808

Overview
NameDY305808
Unique NameDY305808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1263
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305808 vs. ExPASy Swiss-Prot
Match: SODM_PRUPE (Superoxide dismutase [Mn], mitochondrial OS=Prunus persica GN=SOD PE=2 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 5.644e-85
Identity = 156/230 (67.83%), Postives = 177/230 (76.96%), Query Frame = 3
Query:   48 MALRSLAIRKAIGLGKSVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPCLVPLRGINVWELVTTYVTEW---GPRLSEHRWKVKNWRLAIECVSKEMP 728
            MALR+L  R+ +  G      LRGLQT +LPDLPY+Y ALEPAISG+IMQLHHQ HHQ YVTNYNKA+EQL  A++K D  TV +L  AIKFNGGGH+NHSIFWKNLAPV EGGGEPP  SLGWAIDT+FGSLEAL+QKM+AEGAALQGSGWVWL LD E K+LVVETTANQDPLVTK P LVPL GI+VWE    Y  ++    P   ++ WKV NW+ A E   KE P
Sbjct:    1 MALRTLVSRRTLATGLGFRQQLRGLQTFSLPDLPYNYGALEPAISGDIMQLHHQNHHQTYVTNYNKALEQLHDAISKGDAPTVAKLHSAIKFNGGGHINHSIFWKNLAPVREGGGEPPKGSLGWAIDTNFGSLEALVQKMNAEGAALQGSGWVWLALDKELKKLVVETTANQDPLVTKGPTLVPLLGIDVWE--HAYYLQYKNVRPDYLKNIWKVINWKYASEVYEKESP 228          
BLAST of DY305808 vs. ExPASy Swiss-Prot
Match: SODM_HEVBR (Superoxide dismutase [Mn], mitochondrial OS=Hevea brasiliensis GN=SODA PE=2 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 5.644e-85
Identity = 162/235 (68.94%), Postives = 181/235 (77.02%), Query Frame = 3
Query:   48 MALRSLAIRKAI--GLGKSVGLG-LRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPCLVPLRGINVWELVTTYVTEW---GPRLSEHRWKVKNWRLAIECVSKEMPKN 734
            MALRSL  RK +      + GLG LRGLQT +LPDLPYDY ALEPAISGEIMQLHHQKHHQ Y+TNYNKA+EQL  A+ K D++ VV+LQ AIKFNGGGHVNHSIFWKNLAPV EGGGE PH SLGWAID  FGSLE LIQ M+AEGAALQGSGWVWL LD E K+LVVETTANQDPLVTK P LVPL GI+VWE    Y  ++    P   ++ WKV NW+ A E  +KE P +
Sbjct:    1 MALRSLVTRKNLPSAFKAATGLGQLRGLQTFSLPDLPYDYGALEPAISGEIMQLHHQKHHQTYITNYNKALEQLNDAIEKGDSAAVVKLQSAIKFNGGGHVNHSIFWKNLAPVREGGGELPHGSLGWAIDADFGSLEKLIQLMNAEGAALQGSGWVWLALDKELKKLVVETTANQDPLVTKGPTLVPLLGIDVWE--HAYYLQYKNVRPDYLKNIWKVMNWKYASEVYAKECPSS 233          
BLAST of DY305808 vs. ExPASy Swiss-Prot
Match: SODM_NICPL (Superoxide dismutase [Mn], mitochondrial OS=Nicotiana plumbaginifolia GN=SODA PE=1 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 1.257e-84
Identity = 155/230 (67.39%), Postives = 177/230 (76.96%), Query Frame = 3
Query:   48 MALRSLAIRKAIGLGKSVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPCLVPLRGINVWELVTTYVTEW---GPRLSEHRWKVKNWRLAIECVSKEMP 728
            MALR+L  R+ +  G      LRGLQT +LPDLPYDY ALEPAISG+IMQLHHQ HHQ YVTNYNKA+EQL  A++K D  TV +L  AIKFNGGGH+NHSIFWKNLAPV EGGGEPP  SLGWAIDT+FGSLEAL+QKM+AEGAALQGSGWVWLG+D E KRLV+ETTANQDPLV+K   LVPL GI+VWE    Y  ++    P   ++ WKV NW+ A E   KE P
Sbjct:    1 MALRTLVSRRTLATGLGFRQQLRGLQTFSLPDLPYDYGALEPAISGDIMQLHHQNHHQTYVTNYNKALEQLHDAISKGDAPTVAKLHSAIKFNGGGHINHSIFWKNLAPVREGGGEPPKGSLGWAIDTNFGSLEALVQKMNAEGAALQGSGWVWLGVDKELKRLVIETTANQDPLVSKGANLVPLLGIDVWE--HAYYLQYKNVRPDYLKNIWKVMNWKYANEVYEKECP 228          
BLAST of DY305808 vs. ExPASy Swiss-Prot
Match: SODM_ARATH (Superoxide dismutase [Mn], mitochondrial OS=Arabidopsis thaliana GN=SODA PE=1 SV=2)

HSP 1 Score: 308.531 bits (789), Expect = 5.283e-83
Identity = 158/231 (68.40%), Postives = 178/231 (77.06%), Query Frame = 3
Query:   48 MALRSLAIRKAIGLGKSVG---LGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPCLVPLRGINVWELVTTYVTEW---GPRLSEHRWKVKNWRLAIECVSKE 722
            MA+R +A RK +   K      L +RG+QT TLPDLPYDY ALEPAISGEIMQ+HHQKHHQAYVTNYN A+EQL QA+NK D STVV+LQ AIKFNGGGHVNHSIFWKNLAP  EGGGEPP  SLG AID HFGSLE L++KMSAEGAA+QGSGWVWLGLD E K+LVV+TTANQDPLVTK   LVPL GI+VWE    Y  ++    P   ++ WKV NW+ A E   KE
Sbjct:    1 MAIRCVASRKTLAGLKETSSRLLRIRGIQTFTLPDLPYDYGALEPAISGEIMQIHHQKHHQAYVTNYNNALEQLDQAVNKGDASTVVKLQSAIKFNGGGHVNHSIFWKNLAPSSEGGGEPPKGSLGSAIDAHFGSLEGLVKKMSAEGAAVQGSGWVWLGLDKELKKLVVDTTANQDPLVTKGGSLVPLVGIDVWE--HAYYLQYKNVRPEYLKNVWKVINWKYASEVYEKE 229          
BLAST of DY305808 vs. ExPASy Swiss-Prot
Match: SODM_CAPAN (Superoxide dismutase [Mn], mitochondrial OS=Capsicum annuum GN=SODA PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 4.944e-81
Identity = 152/230 (66.09%), Postives = 175/230 (76.09%), Query Frame = 3
Query:   48 MALRSLAIRKAIGLGKSVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPCLVPLRGINVWELVTTYVTEW---GPRLSEHRWKVKNWRLAIECVSKEMP 728
            MALR+L  +K      +    LR +QT +LPDL YDY ALEPAISGEIMQLHHQKHHQ Y+TNYN A++QL  A+NK D+ TV +LQGAIKFNGGGH+NHS+FWKNLAP  EGGGEPP  SLG AIDT+FGSLEA+IQKM+AEGAALQGSGWVWLGLD E KRLV+ETTANQDPLV K P LVPL GI+VWE    Y  ++    P   ++ WKV NW+ A E   KE P
Sbjct:    1 MALRNLMTKKPFAGILTFRQQLRCVQTFSLPDLSYDYGALEPAISGEIMQLHHQKHHQTYITNYNNALQQLHDAINKGDSPTVAKLQGAIKFNGGGHINHSVFWKNLAPTREGGGEPPKGSLGSAIDTNFGSLEAVIQKMNAEGAALQGSGWVWLGLDKELKRLVIETTANQDPLVIKGPNLVPLLGIDVWE--HAYYLQYKNVKPDYLKNIWKVINWKYAAEVYEKECP 228          
BLAST of DY305808 vs. ExPASy Swiss-Prot
Match: SODM1_MAIZE (Superoxide dismutase [Mn] 3.1, mitochondrial OS=Zea mays GN=SODA.4 PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 5.657e-77
Identity = 148/230 (64.35%), Postives = 170/230 (73.91%), Query Frame = 3
Query:   48 MALRSLAIRKAI-----GLGK--SVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPCLVPLRGINVWELVTTYVTEW---GPRLSEHRWKVKNWRLAIE 707
            MALR+LA +K +     G G+  +     RG+ TVTLPDL YD+ ALEPAISGEIM+LHHQKHH  YV NYNKA+EQL  A++K D S VVQLQ AIKFNGGGHVNHSIFWKNL P+ EGGGEPPH  LGWAID  FGS EAL++KM+AEGAALQGSGWVWL LD E K++ VETTANQDPLVTK   LVPL GI+VWE    Y  ++    P    + WKV NW+ A E
Sbjct:    1 MALRTLASKKVLSFPFGGAGRPLAAAASARGVTTVTLPDLSYDFGALEPAISGEIMRLHHQKHHATYVANYNKALEQLETAVSKGDASAVVQLQAAIKFNGGGHVNHSIFWKNLKPISEGGGEPPHGKLGWAIDEDFGSFEALVKKMNAEGAALQGSGWVWLALDKEAKKVSVETTANQDPLVTKGASLVPLLGIDVWE--HAYYLQYKNVRPDYLNNIWKVMNWKYAGE 228          
BLAST of DY305808 vs. ExPASy Swiss-Prot
Match: SODM_ORYSJ (Superoxide dismutase [Mn], mitochondrial OS=Oryza sativa subsp. japonica GN=SODA PE=2 SV=2)

HSP 1 Score: 286.96 bits (733), Expect = 1.646e-76
Identity = 147/226 (65.04%), Postives = 165/226 (73.01%), Query Frame = 3
Query:   48 MALRSLAIRK---AIGLGKSVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPCLVPLRGINVWELVTTYVTEW---GPRLSEHRWKVKNWRLAIE 707
            MALR+LA RK   A  L  +     RG+ TV LPDLPYDY ALEPAISGEIM+LHHQKHH  YV NYNKA+EQL  A+ K D   +V LQ AIKFNGGGHVNHSIFW NL P+ EGGG+PPH+ LGWAID  FGS EAL++KMSAEGAALQGSGWVWL LD E K+L VETTANQDPLVTK   LVPL GI+VWE    Y  ++    P    + WKV NW+ A E
Sbjct:    1 MALRTLASRKTLAAAALPLAAAAAARGVTTVALPDLPYDYGALEPAISGEIMRLHHQKHHATYVANYNKALEQLDAAVAKGDAPAIVHLQSAIKFNGGGHVNHSIFWNNLKPISEGGGDPPHAKLGWAIDEDFGSFEALVKKMSAEGAALQGSGWVWLALDKEAKKLSVETTANQDPLVTKGANLVPLLGIDVWE--HAYYLQYKNVRPDYLSNIWKVMNWKYAGE 224          
BLAST of DY305808 vs. ExPASy Swiss-Prot
Match: SODM4_MAIZE (Superoxide dismutase [Mn] 3.4, mitochondrial OS=Zea mays GN=SODA.3 PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 1.646e-76
Identity = 147/228 (64.47%), Postives = 167/228 (73.25%), Query Frame = 3
Query:   48 MALRSLAIRKAI-----GLGKSVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPCLVPLRGINVWELVTTYVTEW---GPRLSEHRWKVKNWRLAIE 707
            MALR+LA + A+     G  +      RG+ TV LPDL YD+ ALEPAISGEIM+LHHQKHH  YV NYNKA+EQL  A+ K D S VVQLQGAIKFNGGGHVNHSIFWKNL P+ EGGGEPPH  LGWAID  FGS EAL+++M+AEGAALQGSGWVWL LD E K+L VETTANQDPLVTK   LVPL GI+VWE    Y  ++    P    + WKV NW+ A E
Sbjct:    1 MALRTLASKNALSFALGGAARPSAASARGVTTVALPDLSYDFGALEPAISGEIMRLHHQKHHATYVGNYNKALEQLDAAVAKGDASAVVQLQGAIKFNGGGHVNHSIFWKNLKPISEGGGEPPHGKLGWAIDEDFGSFEALVKRMNAEGAALQGSGWVWLALDKEPKKLSVETTANQDPLVTKGASLVPLLGIDVWE--HAYYLQYKNVRPDYLNNIWKVMNWKYAGE 226          
BLAST of DY305808 vs. ExPASy Swiss-Prot
Match: SODM3_MAIZE (Superoxide dismutase [Mn] 3.3, mitochondrial OS=Zea mays GN=SODA.2 PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 2.628e-74
Identity = 142/228 (62.28%), Postives = 165/228 (72.37%), Query Frame = 3
Query:   48 MALRSLAIRKAI-----GLGKSVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPCLVPLRGINVWELVTTYVTEW---GPRLSEHRWKVKNWRLAIE 707
            MALR+LA + A+     G  +      RG+ TV LPDL YD+ ALEP ISGEIM+LHHQK+H  YV NYNKA+EQ+   + K D S VVQLQGAIKFNGGGHVNHSIFWKNL P+ EGGGEPPH  LGWAID  FGS EAL+++M+AEGAALQGSGWVWL LD E K++ VETTANQDPLVTK   LVPL GI+VWE    Y  ++    P    + WKV NW+ A E
Sbjct:    1 MALRTLASKNALSFALGGAARPSAESARGVTTVALPDLSYDFGALEPVISGEIMRLHHQKNHATYVVNYNKALEQIDDVVVKGDDSAVVQLQGAIKFNGGGHVNHSIFWKNLKPISEGGGEPPHGKLGWAIDEDFGSFEALVKRMNAEGAALQGSGWVWLALDKEAKKVSVETTANQDPLVTKGASLVPLLGIDVWE--HAYYLQYKNVRPDYLNNIWKVMNWKYAGE 226          
BLAST of DY305808 vs. ExPASy Swiss-Prot
Match: SODM_PEA (Superoxide dismutase [Mn], mitochondrial OS=Pisum sativum GN=SODA PE=2 SV=2)

HSP 1 Score: 275.789 bits (704), Expect = 3.795e-73
Identity = 149/240 (62.08%), Postives = 169/240 (70.42%), Query Frame = 3
Query:   48 MALRSLAIRKAIGL-----GKSVGLGL-------RGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPCLVPLRGINVWELVTTYVTEW---GPRLSEHRWKVKNWRLAIECVSKE 722
            MA R+L  RK +        K +G  +       RGL   TLPDL YDY ALEP ISGEIMQ+HHQKHHQ Y+TNYNKA+EQL  A+ K DTST V+LQ AIKFNGGGH+NHSIFWKNLAPV EGGGEPP  SLGWAIDT+FGSLEALIQK++AEGAALQ     WLGLD + KRLVVETT  QDPLVTK   LVPL GI+VWE    Y  ++    P   ++ WKV NW+ A E   KE
Sbjct:    1 MAARTLLCRKTLSSVLRNDAKPIGAAIAAASTQSRGLHVFTLPDLAYDYGALEPVISGEIMQIHHQKHHQTYITNYNKALEQLHDAVAKADTSTTVKLQNAIKFNGGGHINHSIFWKNLAPVSEGGGEPPKESLGWAIDTNFGSLEALIQKINAEGAALQ-----WLGLDKDLKRLVVETT--QDPLVTKGASLVPLLGIDVWE--HAYYLQYKNVRPDYLKNIWKVINWKHASEVYEKE 231          
The following BLAST results are available for this feature:
BLAST of DY305808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
SODM_PRUPE5.644e-8567.83Superoxide dismutase [Mn], mitochondrial OS=Prunus... [more]
SODM_HEVBR5.644e-8568.94Superoxide dismutase [Mn], mitochondrial OS=Hevea ... [more]
SODM_NICPL1.257e-8467.39Superoxide dismutase [Mn], mitochondrial OS=Nicoti... [more]
SODM_ARATH5.283e-8368.40Superoxide dismutase [Mn], mitochondrial OS=Arabid... [more]
SODM_CAPAN4.944e-8166.09Superoxide dismutase [Mn], mitochondrial OS=Capsic... [more]
SODM1_MAIZE5.657e-7764.35Superoxide dismutase [Mn] 3.1, mitochondrial OS=Ze... [more]
SODM_ORYSJ1.646e-7665.04Superoxide dismutase [Mn], mitochondrial OS=Oryza ... [more]
SODM4_MAIZE1.646e-7664.47Superoxide dismutase [Mn] 3.4, mitochondrial OS=Ze... [more]
SODM3_MAIZE2.628e-7462.28Superoxide dismutase [Mn] 3.3, mitochondrial OS=Ze... [more]
SODM_PEA3.795e-7362.08Superoxide dismutase [Mn], mitochondrial OS=Pisum ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2BG04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305808 ID=DY305808; Name=DY305808; organism=Citrus sinensis; type=EST; length=1263bp
CTCGGTTGAATTTCGAACGATCAAGAAACGTCACCGTTTCATTCGCGATG
GCTCTCCGTTCGCTTGCCATCAGAAAAGCTATAGGCTTGGGTAAATCCGT
AGGATTAGGGCTGCGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGT
ACGATTACAGCGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTT
CATCACCAGAAGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGT
CGAGCAGCTTTTTCAAGCTTTGAACAAAGTCGATACGTCCACCGTCGTCC
AGTTGCAGGGCGCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCA
ATTTTCTGGAAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACC
ACATAGTTCCCTTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAG
CATTGATACAAAAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGA
TGGGTGTGGCTTGGTTTGGATACAGAGTTTAAAAGGCTTGTGGTTGAAAC
TACTGCAAATCAGGATCCGCTGGTGACCAAAGCCCCATGTCTGGTTCCTT
TGCGAGGTATAAATGTTTGGGAGCTGGTTACTACCTACGTTACAGAATGG
GGACCGAGATTATCTGAACACAGGTGGAAAGTAAAGAACTGGAGGTTGGC
TATTGAATGTGTATCAAAAGAAATGCCCAAAAACTTGAACGTGCCGCCCT
GGCGGGAAGTACGCGTGTGCTGTAGGGGTTCCCCTTGGGATGGGAGAGCG
AGGCCCGGGGGGGTCGGGAAAAAAAGGGCAGGTAAACGGATATATTGGGA
TGAAGACAACCCCCTCTTTGATGGTTGGGAGGCAGGCAAGAGTGCCCGTA
CCGTCGCCCTATGACCACAAGTGGGGCCGAGGCGTAGCCAAATTCGCCAC
GGATAGGGGAAGAAAGCTGGTGAGGGGGAGGAGGTGAATCCTTTGTGTAA
TGGACGTGCAGCAGTGAGGATAGGGGGGTGGGATTCTGGACAGTCAAGAT
GTATAGGAATAGGATAGGGGGGGGCAGAGAAAAGGATACGAGAGTTGATA
AGGTAATTGTGAAAGAAGATGATGATCAAGATTATGAGAGAAAACGCGGC
AAACTCAGGGATGGACATGAGGGGACACTAAAGGGGAAAGCTAGAAAGAT
TATGAGTCAGATGGAGAGGGTGCAAGGAGCGCATATACTGAATACAGCAT
GTTGCACTGATGA
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