DY305799

Overview
NameDY305799
Unique NameDY305799
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1269
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305799_ssr583 microsatellite DY305799_ssr583:583..596. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig915 contig Csv1_Contig915:212..1480. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY305799 vs. ExPASy Swiss-Prot
Match: WAKLM_ARATH (Wall-associated receptor kinase-like 17 OS=Arabidopsis thaliana GN=WAKL17 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 2.437e-11
Identity = 51/153 (33.33%), Postives = 86/153 (56.21%), Query Frame = 3 
Query:  534 VLVAGMWIYREALLKKKREREIDEQKQKLQFNKGGRDLKDMEVNFMADVSDCLDKYRIFKIEELREATDNFSEGCLI----QGSVYKGN-IHGEVYAIKMMKWNACEELKD-------IQKVNHGNLVKLEGFCIDPEDANCYLIYQYI*NGS 956
            VLV G+W  R+ L+K++  +     ++K  F + G  L   E+N    V   ++K RIF  +EL +AT+NFSE  ++    QG+VYKG  + G   A+K  K    ++L++       + ++NH ++VKL G C++ E     L+Y++I NG+
Sbjct:  382 VLVGGVWWLRKFLVKRRMAK-----RKKKFFKRNGGLLLQQELNTRQGV---VEKARIFTSKELEKATENFSENRVLGHGGQGTVYKGMLVDGRTVAVKKSKVIDEDKLQEFINEVVILSQINHRHVVKLLGCCLETEVP--ILVYEFIINGN 524
[Close]
BLAST of DY305799 vs. ExPASy Swiss-Prot
Match: WAKLN_ARATH (Wall-associated receptor kinase-like 18 OS=Arabidopsis thaliana GN=WAKL18 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.262e-11
Identity = 52/153 (33.99%), Postives = 85/153 (55.56%), Query Frame = 3 
Query:  534 VLVAGMWIYREALLKKKREREIDEQKQKLQFNKGGRDLKDMEVNFMADVSDCLDKYRIFKIEELREATDNFSEGCLI----QGSVYKGN-IHGEVYAIKMMKWNACEELKD-------IQKVNHGNLVKLEGFCIDPEDANCYLIYQYI*NGS 956
            VLV G+W  R+ L+K    R I ++K+K  F + G  L   E+N        ++K R+F   EL +AT+NFSE  ++    QG+VYKG  + G   A+K  K    ++L++       + ++NH ++VKL G C++ E     L+Y++I NG+
Sbjct:  391 VLVGGLWWLRKFLIK----RRITKRKKKF-FKRNGGLLLLQELNTREGY---VEKTRVFNSRELEKATENFSENRVLGHGGQGTVYKGMLVDGRTVAVKKSKVIDEDKLQEFINEVVILSQINHRHVVKLLGCCLETEVP--MLVYEFIINGN 533
The following BLAST results are available for this feature:
BLAST of DY305799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
WAKLM_ARATH2.437e-1133.33Wall-associated receptor kinase-like 17 OS=Arabido... [more]
WAKLN_ARATH9.262e-1133.99Wall-associated receptor kinase-like 18 OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM2BF01RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305799 ID=DY305799; Name=DY305799; organism=Citrus sinensis; type=EST; length=1269bp
GCTTTGTCCCCATAACATGCTCTTGCAATACTTTAAACGCTTCTTACACC
ATCTCTTTTGCCAACCTCTCATACACGATCAAGTCTGGTGACACGTTTTA
CCTTGTATCCACTAACAAGTACCAGAATCTCACAACCTATCAGTCTGTTG
AGGTTGTGAACCCTACTTTTGTCCCTACCAAACTTGAAGTCGGTGATGTT
ATTATCTTTCCGGTCTTTTGCAAGTGTCCTAATCAGACTCAGTTGCGAAA
CAGAGTGAATTATCTTGTCTCTTATGTTCTGCAGCCTTCTGAAAACTTGT
CATCGGTTGCTTCAAGGTTTGGAATTGAAACACAGGCTATAATTGACGTT
AATGGCAATAACATTCGGCCATCTGATACCCTATTTGTCCCCGTCGCTCG
GCTTCCAGAACTAAAACAGCCTGCTGTTGCTCCTTCGACCCCTCCATCTG
CTGAAACACCTTCTCGAAAGACTGAAAGAAAAGGAGTCATTATAGGTTTG
TCAATTGGGCTGGGAATTTGTGGGGCCTCGTTGGTTTTGGTTGCCGGGAT
GTGGATTTACAGAGAGGCTCTGTTGAAGAAAAAGAGAGAGAGAGAGATCG
ATGAGCAGAAGCAGAAGCTGCAATTTAACAAAGGAGGGAGGGACTTGAAG
GACATGGAAGTGAACTTCATGGCAGATGTTTCAGATTGCTTGGACAAGTA
CAGAATTTTCAAGATTGAAGAACTGAGAGAAGCCACCGATAACTTCAGTG
AGGGTTGCTTGATTCAAGGGTCTGTTTACAAAGGAAACATTCATGGAGAG
GTCTATGCCATCAAGATGATGAAATGGAATGCCTGTGAAGAGTTGAAGGA
TATACAAAAAGTAAATCACGGCAATCTGGTGAAGCTAGAAGGTTTCTGCA
TAGACCCTGAAGATGCAAATTGCTATCTGATCTACCAATACATTTGAAAT
GGCTCTCCTCCATTCCTGGTTACCTGAAAACCAAAAACAAAAATCCGAAT
TGGAAAACAAAAATTAAGGAATTGCCATTGATGGTTTCCAATGGCCTTGG
AAAACAATACTGAAACCCCCCAAGGGCCTAAAAGGGGAAACCCAAAAAAC
AATCAAAAAACAAGAAAACATTTTCCCTTAAAAACCAAAAACATAAAAAA
CCCCAAAAAATTTCCCCAACATTTTGGAAAAAATAAAAAAAAATTCCGGT
GGCCTCCCCAAGGGCCCCAAAAAAAAAAAGGAGCCCACAATTTTTTGTGT
TGAGAAAAACCCCTAAAGG
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