EY702656

Overview
NameEY702656
Unique NameEY702656
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length519
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY702656 vs. ExPASy Swiss-Prot
Match: UBP12_ARATH (Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=2 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 7.245e-41
Identity = 89/136 (65.44%), Postives = 105/136 (77.21%), Query Frame = 1 
Query:   16 SADILYYEVLDIPLPELQGLKNLKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELSHPNAELRLLEVFYHKIX*DXFAPPMKKIGEYLRVIIGTFRAKRIRGEKKNLGPQHCFIFVLPFSKKNRPTKKIK 423
            ++DILYYEVLDIPLPELQGLK LKVAFHHATK+EVVIHNIRLPKQSTVGDVINELKTKVELSHP+AELRLLEVFYHKI      P  ++I E +     T RA+ I  E+KN+GP    I V  F+K+    ++++
Sbjct:  881 TSDILYYEVLDIPLPELQGLKTLKVAFHHATKEEVVIHNIRLPKQSTVGDVINELKTKVELSHPDAELRLLEVFYHKIY--KIFPSTERI-ENINDQYWTLRAEEIPEEEKNIGPNDRLILVYHFAKETGQNQQVQ 1013
[Close]
BLAST of EY702656 vs. ExPASy Swiss-Prot
Match: UBP13_ARATH (Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.973e-38
Identity = 86/136 (63.24%), Postives = 103/136 (75.74%), Query Frame = 1 
Query:   16 SADILYYEVLDIPLPELQGLKNLKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELSHPNAELRLLEVFYHKIX*DXFAPPMKKIGEYLRVIIGTFRAKRIRGEKKNLGPQHCFIFVLPFSKKNRPTKKIK 423
            ++DILYYEVLDIPLPELQGLK LKVAFH ATKDEV+IHNIRLPKQSTVGDVINELKTKVELSH +AELRLLEVF+HKI      P  ++I E +     T RA+ I  E+KN+GP    I V  F+K+    ++++
Sbjct:  880 TSDILYYEVLDIPLPELQGLKTLKVAFHSATKDEVIIHNIRLPKQSTVGDVINELKTKVELSHQDAELRLLEVFFHKIY--KIFPSTERI-ENINDQYWTLRAEEIPEEEKNIGPNDRLIHVYHFTKEAGQNQQVQ 1012
The following BLAST results are available for this feature:
BLAST of EY702656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UBP12_ARATH7.245e-4165.44Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabid... [more]
UBP13_ARATH1.973e-3863.24Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-010-F06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702656 ID=EY702656; Name=EY702656; organism=Citrus sinensis; type=EST; length=519bp
TTCTCGACCCACGCGTCCGCTGACATTTTGTACTACGAAGTTTTAGATAT
TCCTCTTCCCGAATTGCAAGGTTTGAAAAATCTGAAAGTTGCATTCCATC
ATGCTACCAAGGATGAGGTGGTAATTCACAACATTAGATTACCCAAACAG
AGCACTGTAGGTGATGTGATTAATGAACTTAAAACAAAGGTGGAATTATC
CCATCCAAATGCAGAACTAAGATTGCTTGAAGTTTTCTATCACAAGATAT
ANTAAGATNNCTTTGCCCCCCCNATGAAAAAAATTGGAGAATATTTAAGG
GTTATTATCGGGACCTTTCGGGCAAAGAGAATCCGGGGGGAAAAAAAAAA
CCTTGGGCCCCAACATTGCTTTATTTTTGTTTTACCCTTTTCAAAAAAAA
ATCGCCCCACAAAAAAAATTAAATTTCNTGTGTGTGGGGGGGGGCGGGCN
CCCCCAAAAAAAATTTTTTTTCNAAGAGGAAATTTTTTTTTTTTTTCCCC
CCGGGCCCTNCCCTATCGG
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