DY305796

Overview
NameDY305796
Unique NameDY305796
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1246
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY305796 vs. ExPASy Swiss-Prot
Match: RL10_VITRI (60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 8.089e-52
Identity = 99/113 (87.61%), Postives = 102/113 (90.27%), Query Frame = 2 
Query:   53 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACTQYMAKYAGKDAFLLQVRVRPFPVLRIN*MPSCAGGRPLLT 391
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIAC +YM KYAGKDAF L+VRV PF VLRIN M SCAG   L T
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQT 113
[Close]
BLAST of DY305796 vs. ExPASy Swiss-Prot
Match: RL10_EUPES (60S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 1.056e-51
Identity = 99/113 (87.61%), Postives = 102/113 (90.27%), Query Frame = 2 
Query:   53 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACTQYMAKYAGKDAFLLQVRVRPFPVLRIN*MPSCAGGRPLLT 391
            MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIAC +YM K+AGKDAF L+VRV PF VLRIN M SCAG   L T
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQT 113
[Close]
BLAST of DY305796 vs. ExPASy Swiss-Prot
Match: RL10_SOLME (60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 8.943e-51
Identity = 98/113 (86.73%), Postives = 101/113 (89.38%), Query Frame = 2 
Query:   53 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACTQYMAKYAGKDAFLLQVRVRPFPVLRIN*MPSCAGGRPLLT 391
            MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENVSSEALEAARIAC +YM K AGKDAF L+VRV PF VLRIN M SCAG   L T
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQT 113
[Close]
BLAST of DY305796 vs. ExPASy Swiss-Prot
Match: RL101_ORYSJ (60S ribosomal protein L10-1 OS=Oryza sativa subsp. japonica GN=SC34 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.992e-50
Identity = 97/113 (85.84%), Postives = 101/113 (89.38%), Query Frame = 2 
Query:   53 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACTQYMAKYAGKDAFLLQVRVRPFPVLRIN*MPSCAGGRPLLT 391
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEFP+CVHLVSWEKENVSSEALEAARIAC +YM K AGKDAF L+VRV PF VLRIN M SCAG   L T
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQT 113
[Close]
BLAST of DY305796 vs. ExPASy Swiss-Prot
Match: RL101_ORYSI (60S ribosomal protein L10-1 OS=Oryza sativa subsp. indica GN=SC34 PE=2 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 1.992e-50
Identity = 97/113 (85.84%), Postives = 101/113 (89.38%), Query Frame = 2 
Query:   53 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACTQYMAKYAGKDAFLLQVRVRPFPVLRIN*MPSCAGGRPLLT 391
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEFP+CVHLVSWEKENVSSEALEAARIAC +YM K AGKDAF L+VRV PF VLRIN M SCAG   L T
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQT 113
[Close]
BLAST of DY305796 vs. ExPASy Swiss-Prot
Match: RL103_ARATH (60S ribosomal protein L10-3 OS=Arabidopsis thaliana GN=RPL10C PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.291e-49
Identity = 95/113 (84.07%), Postives = 100/113 (88.50%), Query Frame = 2 
Query:   53 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACTQYMAKYAGKDAFLLQVRVRPFPVLRIN*MPSCAGGRPLLT 391
            MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENVSSEALEAARIAC +YM K AGKDAF L++RV PF VLRIN M SCAG   L T
Sbjct:    1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQT 113
[Close]
BLAST of DY305796 vs. ExPASy Swiss-Prot
Match: RL101_ARATH (60S ribosomal protein L10-1 OS=Arabidopsis thaliana GN=RPL10A PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.291e-49
Identity = 95/113 (84.07%), Postives = 100/113 (88.50%), Query Frame = 2 
Query:   53 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACTQYMAKYAGKDAFLLQVRVRPFPVLRIN*MPSCAGGRPLLT 391
            MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENVSSEALEAARIAC +YM K AGKDAF L++RV PF VLRIN M SCAG   L T
Sbjct:    1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQT 113
[Close]
BLAST of DY305796 vs. ExPASy Swiss-Prot
Match: RL102_ARATH (60S ribosomal protein L10-2 OS=Arabidopsis thaliana GN=RPL10B PE=2 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 2.877e-49
Identity = 94/113 (83.19%), Postives = 100/113 (88.50%), Query Frame = 2 
Query:   53 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACTQYMAKYAGKDAFLLQVRVRPFPVLRIN*MPSCAGGRPLLT 391
            MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMK+KGVDEFP+CVHLVSWEKENVSSEALEAARIAC +YM K AGKDAF L++RV PF VLRIN M SCAG   L T
Sbjct:    1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQT 113
[Close]
BLAST of DY305796 vs. ExPASy Swiss-Prot
Match: RL102_ORYSJ (60S ribosomal protein L10-2 OS=Oryza sativa subsp. japonica GN=SG12 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.093e-48
Identity = 95/113 (84.07%), Postives = 99/113 (87.61%), Query Frame = 2 
Query:   53 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACTQYMAKYAGKDAFLLQVRVRPFPVLRIN*MPSCAGGRPLLT 391
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEF  CVHLVSWEKENV+SEALEAARIAC +YM K AGKDAF L+VRV PF VLRIN M SCAG   L T
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQT 113
[Close]
BLAST of DY305796 vs. ExPASy Swiss-Prot
Match: RL102_ORYSI (60S ribosomal protein L10-2 OS=Oryza sativa subsp. indica GN=SG12 PE=2 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 1.093e-48
Identity = 95/113 (84.07%), Postives = 99/113 (87.61%), Query Frame = 2 
Query:   53 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACTQYMAKYAGKDAFLLQVRVRPFPVLRIN*MPSCAGGRPLLT 391
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEF  CVHLVSWEKENV+SEALEAARIAC +YM K AGKDAF L+VRV PF VLRIN M SCAG   L T
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQT 113
The following BLAST results are available for this feature:
BLAST of DY305796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
RL10_VITRI8.089e-5287.6160S ribosomal protein L10 OS=Vitis riparia GN=RPL1... [more]
RL10_EUPES1.056e-5187.6160S ribosomal protein L10 OS=Euphorbia esula GN=RP... [more]
RL10_SOLME8.943e-5186.7360S ribosomal protein L10 OS=Solanum melongena GN=... [more]
RL101_ORYSJ1.992e-5085.8460S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL101_ORYSI1.992e-5085.8460S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL103_ARATH1.291e-4984.0760S ribosomal protein L10-3 OS=Arabidopsis thalian... [more]
RL101_ARATH1.291e-4984.0760S ribosomal protein L10-1 OS=Arabidopsis thalian... [more]
RL102_ARATH2.877e-4983.1960S ribosomal protein L10-2 OS=Arabidopsis thalian... [more]
RL102_ORYSJ1.093e-4884.0760S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]
RL102_ORYSI1.093e-4884.0760S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2BE10RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305796 ID=DY305796; Name=DY305796; organism=Citrus sinensis; type=EST; length=1246bp
GCGGAGCCGAGCAGAAAGAGAGAATAGCTGAGACCGAACACGAACGCTCG
CCATGGGAAGAAGACCGGCAAGGTGTTACCGCCAAATCAAGAACAAACCC
TACCCAAAGTCCCGCTTTTGCCGCGGTGTCCCCGATCCCAAGATCAGAAT
CTACGATGTCGGGATGAAGAAGAAAGGCGTCGACGAGTTCCCCTTCTGCG
TTCACCTCGTCAGTTGGGAGAAGGAGAACGTGTCGAGCGAGGCCTTGGAA
GCTGCCCGTATCGCTTGCACACAGTACATGGCCAAGTACGCTGGCAAGGA
TGCTTTCCTTTTGCAAGTGAGGGTGCGCCCCTTCCCCGTTCTGCGCATTA
ACTAGATGCCTTCATGTGCTGGTGGACGTCCGCTACTTACTGTATTGTGT
GTCCGCTATTTCTTCCCCCACGCTCTGCACCTTTTTTCTGGGTCTCTTGT
GTTTCGAAACTCGCTTTTTCGATTAATTAGGCACTCCCATCTAACTATTG
CTCGATGGTCCCGCACAATAATGGATCCTAAGGAGCAAGGAATCGTAAAT
TTTAGAATGGGCTTCTTGGCCTCAGTTTCCTACTATGTTAATTAATGTAC
CTAATATAAGAAAAAACCCGGGGTCCCATCGAATTATCTTCCCCATGAGA
CCGAGCTCTAATACAGGAGAGGGGTACTTCATTTTCTCGGACCATTTTGA
AAAACTATCTCCCTTATCCCTAGTCCCTTTCTTCCTATTGGATGCAAAAA
ATTCAACACGATTGGGATCGTGAAACTCCTAAAATTGTCGTAACGATGGC
AGGAACATTAAATGAGATCGAATAATGACGTGAACGGAATAATTTTTAGT
ATTTCTGCTTTTAATCTCATTTTTTAGCGGCAGACCCATTTCGAGCCCCC
AGCCCAGGCCACACAATATAAATTTGTGGATGTAAGGTCAGTTATCTCTG
TCTATCCTCCGTGCATGTTTTACCTAAAGATTTGTGGGATTGATAAATAT
ACGATTTTTTAAACCATTCAACACATTGCCATCCGGGAGCTGCAAGTATG
TTGCGCTCAGCGTCATACTATGGTCATTCCCAGCTGTAAGTCGCTTTGAT
TACCTCACAGCAGCCGACACTGTCGCTAAATGATTCTCACTTAATTTTTT
TTATAAGTACTTGCGCTAAATCGTTTTACTTTCTTTTACTCGAAAGAATT
GGCCACGGTCTTTTGCCTCCCTGTCTTTCTTTGCCCGATTCTTTAT
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