EY702650

Overview
NameEY702650
Unique NameEY702650
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702650 vs. ExPASy Swiss-Prot
Match: HDA17_ARATH (Histone deacetylase 17 OS=Arabidopsis thaliana GN=HDA17 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.943e-41
Identity = 75/97 (77.32%), Postives = 90/97 (92.78%), Query Frame = 3
Query:   24 NEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPEFDEDEQNPDERMDPHTQDKQIQRDDEFYEGDTDND 314
            N+YIKYFAP+ SL+IP GHIENLN+KSY+S+IK+Q+LENLR IQHAPSVQMQEVPPDFYIP+FDEDEQNPD R+D  ++DKQIQRDDE+++GD DND
Sbjct:   60 NDYIKYFAPDFSLKIPGGHIENLNTKSYISSIKVQILENLRYIQHAPSVQMQEVPPDFYIPDFDEDEQNPDVRVDQRSRDKQIQRDDEYFDGDNDND 156          
BLAST of EY702650 vs. ExPASy Swiss-Prot
Match: HDA10_ARATH (Putative histone deacetylase 10 OS=Arabidopsis thaliana GN=HDA10 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.943e-41
Identity = 75/97 (77.32%), Postives = 90/97 (92.78%), Query Frame = 3
Query:   24 NEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPEFDEDEQNPDERMDPHTQDKQIQRDDEFYEGDTDND 314
            N+YIKYFAP+ SL+IP GHIENLN+KSY+S+IK+Q+LENLR IQHAPSVQMQEVPPDFYIP+FDEDEQNPD R+D  ++DKQIQRDDE+++GD DND
Sbjct:   44 NDYIKYFAPDFSLKIPGGHIENLNTKSYISSIKVQILENLRYIQHAPSVQMQEVPPDFYIPDFDEDEQNPDVRVDQRSRDKQIQRDDEYFDGDNDND 140          
BLAST of EY702650 vs. ExPASy Swiss-Prot
Match: HDA9_ARATH (Histone deacetylase 9 OS=Arabidopsis thaliana GN=HDA9 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.726e-41
Identity = 75/97 (77.32%), Postives = 89/97 (91.75%), Query Frame = 3
Query:   24 NEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPEFDEDEQNPDERMDPHTQDKQIQRDDEFYEGDTDND 314
            N+YIKYFAP+ SL+IP GHIENLN+KSY+S+IK+Q+LENLR IQHAPSVQMQEVPPDFYIP+FDEDEQNPD R D  ++DKQIQRDDE+++GD DND
Sbjct:  328 NDYIKYFAPDFSLKIPGGHIENLNTKSYISSIKVQILENLRYIQHAPSVQMQEVPPDFYIPDFDEDEQNPDVRADQRSRDKQIQRDDEYFDGDNDND 424          
BLAST of EY702650 vs. ExPASy Swiss-Prot
Match: HDAC1_STRPU (Histone deacetylase 1 OS=Strongylocentrotus purpuratus GN=HDAC1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.155e-16
Identity = 44/99 (44.44%), Postives = 63/99 (63.64%), Query Frame = 3
Query:   24 NEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPEFD-EDE-QNPDERMDPHTQDKQIQRDDEFYEGDTDND 314
            N+Y +YF P+  L I   ++ N N+  YL  IK ++ EN+R I HAP VQMQ +P D    + D EDE +NPD+R+    QDK+IQRDDEF + + + +
Sbjct:  330 NDYFEYFGPDFKLHISPSNMTNQNTGEYLDKIKTRLYENMRMIPHAPGVQMQPIPEDAIPDDSDAEDEAENPDKRISIMAQDKRIQRDDEFSDSEDEGE 428          
BLAST of EY702650 vs. ExPASy Swiss-Prot
Match: HDA11_DICDI (Type-1 histone deacetylase 1 OS=Dictyostelium discoideum GN=hdaA PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.971e-16
Identity = 36/96 (37.50%), Postives = 62/96 (64.58%), Query Frame = 3
Query:   24 NEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPEFDEDEQNPDERMDPHTQDKQIQRDDEFYEGDTDN 311
            N+Y++Y+ PE  L I   ++EN N+K YL  +K+Q+LENLR++ HAP+    ++PPD +    DED+++PD R+    +DK++    E  + D ++
Sbjct:  326 NDYLEYYGPEYRLHITPNNMENQNTKDYLEKLKIQLLENLRNLNHAPAAAHHDIPPDSFNYSDDEDDEDPDVRISEADRDKKVHHQGELSDSDEED 421          
BLAST of EY702650 vs. ExPASy Swiss-Prot
Match: HDAC1_RAT (Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.488e-16
Identity = 42/99 (42.42%), Postives = 63/99 (63.64%), Query Frame = 3
Query:   24 NEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPE--FDEDEQNPDERMDPHTQDKQIQRDDEFYEGDTDND 314
            N+Y +YF P+  L I   ++ N N+  YL  IK ++ ENLR + HAP VQMQ +P D  IPE   DEDE++PD+R+   + DK+I  ++EF + D + +
Sbjct:  331 NDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPED-AIPEESGDEDEEDPDKRISICSSDKRIACEEEFSDSDEEGE 428          
BLAST of EY702650 vs. ExPASy Swiss-Prot
Match: HDAC1_MOUSE (Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.488e-16
Identity = 42/99 (42.42%), Postives = 63/99 (63.64%), Query Frame = 3
Query:   24 NEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPE--FDEDEQNPDERMDPHTQDKQIQRDDEFYEGDTDND 314
            N+Y +YF P+  L I   ++ N N+  YL  IK ++ ENLR + HAP VQMQ +P D  IPE   DEDE++PD+R+   + DK+I  ++EF + D + +
Sbjct:  331 NDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPED-AIPEESGDEDEEDPDKRISICSSDKRIACEEEFSDSDEEGE 428          
BLAST of EY702650 vs. ExPASy Swiss-Prot
Match: HDAC1_BOVIN (Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.488e-16
Identity = 42/99 (42.42%), Postives = 63/99 (63.64%), Query Frame = 3
Query:   24 NEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPE--FDEDEQNPDERMDPHTQDKQIQRDDEFYEGDTDND 314
            N+Y +YF P+  L I   ++ N N+  YL  IK ++ ENLR + HAP VQMQ +P D  IPE   DEDE++PD+R+   + DK+I  ++EF + D + +
Sbjct:  331 NDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPED-AIPEESGDEDEEDPDKRISICSSDKRIACEEEFSDSDEEGE 428          
BLAST of EY702650 vs. ExPASy Swiss-Prot
Match: HDA1B_XENLA (Probable histone deacetylase 1-B OS=Xenopus laevis GN=hdac1-B PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.845e-15
Identity = 38/98 (38.78%), Postives = 61/98 (62.24%), Query Frame = 3
Query:   24 NEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPD-FYIPEFDEDEQNPDERMDPHTQDKQIQRDDEFYEGDTDND 314
            N+Y +YF P+  L I   ++ N N+  YL  IK ++ ENLR + HAP VQMQ +P D  +    +EDE++PD+R+   + DK+I  D+EF + + + +
Sbjct:  331 NDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDSVHDDSGEEDEEDPDKRISIRSSDKRIACDEEFSDSEDEGE 428          
BLAST of EY702650 vs. ExPASy Swiss-Prot
Match: HDAC1_PONAB (Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.716e-15
Identity = 41/99 (41.41%), Postives = 62/99 (62.63%), Query Frame = 3
Query:   24 NEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPE--FDEDEQNPDERMDPHTQDKQIQRDDEFYEGDTDND 314
            N+Y +YF P+  L I   ++ N N+  YL  IK ++ ENLR + HAP VQMQ +P D  IPE   DEDE +PD+R+   + DK+I  ++EF + + + +
Sbjct:  331 NDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPED-AIPEESGDEDEDDPDKRISICSSDKRIACEEEFSDSEEEGE 428          
The following BLAST results are available for this feature:
BLAST of EY702650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
HDA17_ARATH3.943e-4177.32Histone deacetylase 17 OS=Arabidopsis thaliana GN=... [more]
HDA10_ARATH3.943e-4177.32Putative histone deacetylase 10 OS=Arabidopsis tha... [more]
HDA9_ARATH6.726e-4177.32Histone deacetylase 9 OS=Arabidopsis thaliana GN=H... [more]
HDAC1_STRPU1.155e-1644.44Histone deacetylase 1 OS=Strongylocentrotus purpur... [more]
HDA11_DICDI1.971e-1637.50Type-1 histone deacetylase 1 OS=Dictyostelium disc... [more]
HDAC1_RAT7.488e-1642.42Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac... [more]
HDAC1_MOUSE7.488e-1642.42Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=... [more]
HDAC1_BOVIN7.488e-1642.42Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 ... [more]
HDA1B_XENLA2.845e-1538.78Probable histone deacetylase 1-B OS=Xenopus laevis... [more]
HDAC1_PONAB3.716e-1541.41Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-010-E12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702650 ID=EY702650; Name=EY702650; organism=Citrus sinensis; type=EST; length=885bp
CCACGCGTCCGCCCACGCGTCCGAATGAATATATCAAGTATTTTGCCCCC
GAGTGTTCATTGAGAATTCCAAATGGACACATAGAGAATTTGAATAGCAA
ATCATATCTTAGCACGATTAAAATGCAAGTACTAGAAAATCTTCGTTCCA
TACAACATGCTCCAAGTGTTCAGATGCAAGAGGTTCCACCCGACTTCTAT
ATTCCTGAATTTGATGAAGATGAGCAGAACCCTGATGAACGAATGGATCC
GCACACTCAAGACAAGCAAATCCAGCGTGATGATGAATTCTACGAAGGAG
ACACTGATAATGATCACATGGACGTTGGGTAACGCAACGGAGCAATTTTT
TTCCCCTTTGGAGGGCACATTCCAGCTAAGTGTCGTCATTAAAATCGAAT
TAATGGTTAGCATCTGGATAAATACGAAAATAAATCTATGATGCATCTGT
TCATATTGCTTCACCTTAACATTCTCATGTAATTGACTGCATTGCCTAAT
CATATTGTTTTCCATCCATTTTTTCTATGTCCTCAATAACTATGCCCCCT
CCACATACATGACACTGCCCGACCTCCTCCTTCTTCCAAACCATTGTCCC
ACCTTCTCTATTATTCAATTATGAATAAGTTTTAAAAATAAAATGTCTCC
AAGCGGCGTACTCTTCACAAGATCTATTAGAACAAACACTTCACTTCTGC
CATCCATCTTGTCTCTCTATACGGCGCTCCCTTTTATAAATATCTTTGAA
ACACCACTCCAATATCTACACCAACCGGACCCACTTTGTCCTTATACCTC
TGTTATTTCAATGCCTCCAACTCGACCCCCTACCTCGCCTGCTATCCCCA
CAACACATGCCCTCCCCCACTCCCTCATCCCACAC
back to top