EY702644

Overview
NameEY702644
Unique NameEY702644
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10420 contig Csv1_Contig10420:1..891. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702644 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 5.270e-57
Identity = 106/192 (55.21%), Postives = 135/192 (70.31%), Query Frame = 2
Query:  251 PTFQFEEYMTSKSKKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXXXXXXXXQVTDLDSEG-KDVSLSELEYIHVHKTAKLLEASXXL 823
            P+F F+ YM  K   +++AL+ A+P+Q P KIHE+MRYSLLAGGKR+RP LC+A+CELVGG++S+ MP ACA+EM HTMSLIHDDLP +DNDDLRRGKPTNH VFGE              FEH+A  T+ VS+ R+VRA+               QV D++SEG  +V L +LE+IH+HKTAKLLE +  L
Sbjct:   75 PSFDFKSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKRVRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHIVFGEDVAVLAGDALLAFAFEHIAVSTLNVSSARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSEVDLEKLEFIHIHKTAKLLEGAVVL 266          
BLAST of EY702644 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 1.162e-55
Identity = 114/195 (58.46%), Postives = 134/195 (68.72%), Query Frame = 2
Query:  254 TFQFEEYMTSKSKKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVG--VSTDRVVRAITXXXXXXXXXXXXXXQVTDLDSEG---KDVSLSELEYIHVHKTAKLLEASXXL 823
            +F F  Y+ +K++ V+KALD A+P++ P KIHEAMRYSLLAGGKR+RPVLCIA+CELVGG+ES  MP ACA+EM HTMSLIHDDLP +DNDDLRRGKPTNHKVFGE              FEH+A+ T    VS  RVVRA+               QV D+ SEG    DV L  LE+IH+HKTA LLEAS  L
Sbjct:   73 SFDFMSYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALLEASAVL 267          

HSP 2 Score: 21.9422 bits (45), Expect = 1.162e-55
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 1
Query:  859 KKSRNYARCIGLL 897
            ++ R +ARCIGLL
Sbjct:  280 ERLRKFARCIGLL 292          
BLAST of EY702644 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 2.575e-55
Identity = 107/191 (56.02%), Postives = 132/191 (69.11%), Query Frame = 2
Query:  254 TFQFEEYMTSKSKKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXXXXXXXXQVTDLDSEG-KDVSLSELEYIHVHKTAKLLEASXXL 823
            +F F+ YM  K+  V+KAL++A+ ++ P KIHE+MRYSLLAGGKR+RP+LCIA+CEL GG ES+ MP ACA+EM HTMSL+HDDLP +DNDDLRRGKPTNHKVFGE              FEH+A  T GVS++R+VR +               QV D+ SEG  DV L  LE+IH+HKTA LLE S  L
Sbjct:   63 SFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGGKRVRPMLCIAACELFGGTESVAMPSACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHIATATKGVSSERIVRVVGELAKCIGSEGLVAGQVVDVCSEGIADVGLEHLEFIHIHKTAALLEGSVVL 253          

HSP 2 Score: 22.7126 bits (47), Expect = 2.575e-55
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  862 KSRNYARCIGLL 897
            K R +ARCIGLL
Sbjct:  267 KLRKFARCIGLL 278          
BLAST of EY702644 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.435e-55
Identity = 113/200 (56.50%), Postives = 135/200 (67.50%), Query Frame = 2
Query:  236 VKIALPTFQFEEYMTSKSKKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVG-VSTDRVVRAITXXXXXXXXXXXXXXQVTDLDSEGKD---VSLSELEYIHVHKTAKLLEASXXL 823
            +K +  +F F  Y+  K+  V+KALD A+P++ P KIHEAMRYSLLAGGKR+RPVLCIA+CELVGG+ESL MP  CA+EM HTMSLIHDDLP +DNDDLRRGKPTNHKV+GE              FEH+A+ T   VS  RVVRA+               QV D+ SEG D   V L  L++IH+HKTA LLEAS  L
Sbjct:   63 LKSSSSSFDFMSYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAMPARCAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVL 262          

HSP 2 Score: 21.9422 bits (45), Expect = 7.435e-55
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 1
Query:  859 KKSRNYARCIGLL 897
            ++ R +ARCIGLL
Sbjct:  275 ERLRKFARCIGLL 287          
BLAST of EY702644 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 5.172e-53
Identity = 117/259 (45.17%), Postives = 150/259 (57.92%), Query Frame = 2
Query:   71 SALLKNSPLNY--FKMPFMIPFPNMKPFPMKN-----NACHAENLASVKPSQGAESIMNLKPVKIALPTFQFEEYMTSKSKKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXXXXXXXXQVTDLDSEGK-DVSLSELEYIHVHKTAKLLEASXXL 823
            + L+ N  L+Y  F     IP  N K  P  N     +      +A+ K  +  E+    +P       F F+ Y+T K+  V+KALDEA+ ++ P  IHEAMRYSLLAGGKR+RP+LC+A+CELVGG++   M  ACA+EM HTMSLIHDDLP +DNDDLRRGKPTNHK++GE              FEH+   T GV+  R+V A+               QV D+   G   VSL  LE+IHVHKTA LLE+S  L
Sbjct:   14 ACLVFNQTLSYKSFNGFMKIPLKNSKINPKLNKKRPFSPLTVSAIATTKEDERIEAAQTEEP-------FNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGGKRVRPMLCLAACELVGGNQENAMAAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKIYGEDVAVLAGDSLLAFAFEHIVNSTAGVTPSRIVGAVAELAKSIGTEGLVAGQVADIKCTGNASVSLETLEFIHVHKTAALLESSVVL 265          

HSP 2 Score: 23.0978 bits (48), Expect = 5.172e-53
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 1
Query:  859 KKSRNYARCIGLL 897
            +K R +ARCIGLL
Sbjct:  278 EKLRRFARCIGLL 290          
BLAST of EY702644 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 4.684e-51
Identity = 103/193 (53.37%), Postives = 129/193 (66.84%), Query Frame = 2
Query:  254 TFQFEEYMTSKSKKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXXXXXXXXQVTDLDSEGKD---VSLSELEYIHVHKTAKLLEASXXL 823
            TF+F+ YM SK++ V+KAL+EA+P+  P KIHEAMRY++LA GKR+RP+LC+ASCELVGG E+  MP ACA+EM HTMSLI DDLP +DNDDLRRGKPT HKV+GE              FEH+   T  +S++R+V A+               Q  D+ SEG D   V L  LE+IHVHKTA LLE +  L
Sbjct:   82 TFEFDPYMMSKAESVNKALEEAIPVGEPLKIHEAMRYAILAAGKRVRPILCLASCELVGGQENAAMPAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVYGEGVAILSGGALLSLAFEHMT--TAEISSERMVWAVRELARSIGTRGLVAGQAMDISSEGLDLNEVGLEHLEFIHVHKTAVLLETAAVL 272          

HSP 2 Score: 21.557 bits (44), Expect = 4.684e-51
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = 1
Query:  868 RNYARCIGLL 897
            R +ARCIGLL
Sbjct:  288 RKFARCIGLL 297          
BLAST of EY702644 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.801e-50
Identity = 101/190 (53.16%), Postives = 127/190 (66.84%), Query Frame = 2
Query:  254 TFQFEEYMTSKSKKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXXXXXXXXQVTDLDSEG---KDVSLSELEYIHVHKTAKLLEAS 814
            +F F+ YM SK++ +++ALDEA+P+  P  IH+AMRY++LAGGKR+RP+LC+A+CELVGG+E L +  ACA+EM HTMSLI DDLP +DNDDLRRGKPT HKVFGE              FEH+      VS+ ++VRA+               Q  DL SEG    DV L +LEYIHVHKT  LLEAS
Sbjct:   78 SFDFKPYMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGGKRVRPILCLAACELVGGEERLAIQAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVFGESVAILSGGALLALAFEHLT--EADVSSKKMVRAVKELAKSIGTKGLVAGQAKDLSSEGLEQNDVGLEDLEYIHVHKTGSLLEAS 265          
BLAST of EY702644 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.510e-47
Identity = 97/193 (50.26%), Postives = 125/193 (64.77%), Query Frame = 2
Query:  257 FQFEEYMTSKSKKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVG-VSTDRVVRAITXXXXXXXXXXXXXXQVTDLDSEGKD---VSLSELEYIHVHKTAKLLEASXXL 823
            F F+ YM  K++ V+ ALD ++P++ P  + EA+RYSLLAGGKR+RP+LCIA CELVGGDE+  M  ACA+EM HT SLIHDDLP +DN DLRRGKPTNHKV+GE              FEH+   + G V+ +R++RA+               Q+ DL SE  +   V L  LE+IH+HKTA LLEA+  L
Sbjct:   64 FDFKLYMIRKAESVNAALDVSVPLREPLTVQEAVRYSLLAGGKRVRPLLCIAVCELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVYGEDMAVLAGDALLALAFEHMTVVSSGLVAPERMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAAAVL 256          

HSP 2 Score: 24.6386 bits (52), Expect = 6.510e-47
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1
Query:  859 KKSRNYARCIGLL 897
            +K R YARCIGLL
Sbjct:  269 EKLRKYARCIGLL 281          
BLAST of EY702644 vs. ExPASy Swiss-Prot
Match: CRTE_CYAPA (Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.539e-43
Identity = 89/197 (45.18%), Postives = 121/197 (61.42%), Query Frame = 2
Query:  227 LKPVKIALPTFQFEEYMTSKSKKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXXXXXXXXQVTDLDSEGK-DVSLSELEYIHVHKTAKLLEAS 814
            +KP++     F    Y+  + + V+  L++++P  +P  I++++RYSL AGGKRIRP+LC+ASCEL GG   + +P ACALEM HTMSLIHDDLPA+DND  RRGKPTNH ++GE              FE +A +T  V  D +V+ I               Q+ DL SEGK D +L  L +IH+HKT  LLEA+
Sbjct:    1 MKPLQT---NFNLLTYLYERKEIVEDTLNKSIPRGNPTFIYDSIRYSLSAGGKRIRPILCLASCELAGGTMEMALPTACALEMIHTMSLIHDDLPAMDNDSYRRGKPTNHIIYGEDLAILAGDALLAYAFEFIATQTKNVPADLIVKVIAQVAHSVTTSGLVGGQIIDLSSEGKSDTTLETLNFIHIHKTGALLEAA 194          
BLAST of EY702644 vs. ExPASy Swiss-Prot
Match: GGPP6_ARATH (Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 8.099e-41
Identity = 93/211 (44.08%), Postives = 125/211 (59.24%), Query Frame = 2
Query:  224 NLKPVKIALPTFQFEEYMTSKSKKVDKALDEALPM--------QHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKT-VGVSTDRVVRAITXXXXXXXXXXXXXXQVTDLDSE-----GKDVSLSELEYIHVHKTAKLLEAS 814
            N +   IA    +F  YM +K+K ++KALD ++P+        +   ++H+AMRY+LL GGKR+RP+LC+ +CELVGG ES  MP ACA+EM H  SLI DDLP +D+D LRRGKPTNHKVFGE T             +   A T +GV+++RV+RA+               Q  DL  E      +D  L  LE +HVHKTA L+EA+
Sbjct:   19 NRRLSSIASSDSEFISYMKNKAKSINKALDNSIPLCNNFVPLWEPVLEVHKAMRYTLLPGGKRVRPMLCLVACELVGGQESTAMPAACAVEMIHAASLILDDLPCMDDDSLRRGKPTNHKVFGEKTSILASNALRSLAVKQTLASTSLGVTSERVLRAVQEMARAVGTEGLVAGQAADLAGERMSFKNEDDELRYLELMHVHKTAVLVEAA 229          

HSP 2 Score: 21.557 bits (44), Expect = 8.099e-41
Identity = 6/13 (46.15%), Postives = 12/13 (92.31%), Query Frame = 1
Query:  859 KKSRNYARCIGLL 897
            ++ ++YARC+GL+
Sbjct:  245 ERLKSYARCVGLM 257          
The following BLAST results are available for this feature:
BLAST of EY702644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
GGPPS_HEVBR5.270e-5755.21Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP1_ARATH1.162e-5558.46Geranylgeranyl pyrophosphate synthetase 1, chlorop... [more]
GGPPS_CATRO2.575e-5556.02Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_SINAL7.435e-5556.50Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_CAPAN5.172e-5345.17Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP2_ARATH4.684e-5153.37Geranylgeranyl pyrophosphate synthetase 2 OS=Arabi... [more]
GGPP4_ARATH2.801e-5053.16Geranylgeranyl pyrophosphate synthetase 4 OS=Arabi... [more]
GGPP3_ARATH6.510e-4750.26Geranylgeranyl pyrophosphate synthetase 3, chlorop... [more]
CRTE_CYAPA2.539e-4345.18Geranylgeranyl pyrophosphate synthetase homolog OS... [more]
GGPP6_ARATH8.099e-4144.08Geranylgeranyl pyrophosphate synthetase 6, mitocho... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-010-E06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702644 ID=EY702644; Name=EY702644; organism=Citrus sinensis; type=EST; length=899bp
TTTCCGACCCACGCGTCCGCAAAATCTTGTTTCCATGGCCTTCTCAGCAA
CAATTCCTAGCTGTACCCATTCAGCTCTCCTCAAGAACTCCCCACTCAAT
TATTTCAAAATGCCCTTTATGATCCCATTTCCGAACATGAAACCCTTTCC
CATGAAAAATAACGCCTGCCACGCTGAAAACTTAGCTTCGGTAAAACCAT
CCCAGGGTGCAGAATCGATCATGAACCTCAAGCCGGTAAAGATAGCTCTA
CCAACTTTCCAGTTTGAAGAATACATGACCAGCAAGTCGAAAAAAGTGGA
CAAAGCATTAGATGAGGCATTGCCCATGCAACATCCAGAAAAAATACACG
AGGCCATGAGATACTCTCTTCTTGCTGGAGGCAAGCGTATCCGTCCTGTT
CTATGCATTGCTTCATGCGAATTAGTAGGAGGAGATGAGTCCTTGGTGAT
GCCAATGGCTTGTGCACTAGAGATGACTCACACGATGTCCCTCATTCATG
ATGATCTCCCTGCACTGGACAACGATGATCTTAGACGAGGAAAGCCTACA
AATCACAAAGTCTTTGGTGAACCAACAGCAATTCTTGCAGGTGATGCTCT
GCTTGCCCTTGCTTTTGAACATGTAGCAGCCAAGACCGTCGGTGTGTCAA
CTGACCGCGTGGTTCGAGCCATTACGGAGCTGGGTTCCGCACTTGGAGCA
GAAGGGCTCCTGAAAGGACAAGTTACTGACCTTGACAGTGAAGGAAAGGA
TGTGAGTTTGAGTGAATTGGAGTACATTCATGTGCACAAAACCGCGAAGC
TTTTAGAAGCATCTNGTGNTTTGCCGAGTGATAATCGGAGGGAGAAATGT
GATGGAATAAAAAGAGTAGAAATTATGCCAGGTGTATAGGATTATTATT
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