DY305744

Overview
NameDY305744
Unique NameDY305744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1276
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305744_ssr548 microsatellite DY305744_ssr548:548..559. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP_CITSI (ATP-dependent Clp protease proteolytic subunit OS=Citrus sinensis GN=clpP PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 6.626e-49
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 2 
Query:  425 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            + NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA
Sbjct:   23 IYNRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 121
[Close]
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP_DAUCA (ATP-dependent Clp protease proteolytic subunit OS=Daucus carota GN=clpP PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.689e-44
Identity = 87/97 (89.69%), Postives = 93/97 (95.88%), Query Frame = 2 
Query:  431 NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            NRLYRERLLFLGQ V+S+ISNQLIG+MVYLSIEN+TKDLYLFINSPGGWVIPG+AIYDTMQFVRPDVQTICMGLAASMGSF+LA G  TKRLAFPHA
Sbjct:   25 NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIENDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILAGGEITKRLAFPHA 121
[Close]
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP_GOSHI (ATP-dependent Clp protease proteolytic subunit OS=Gossypium hirsutum GN=clpP PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.095e-43
Identity = 86/97 (88.66%), Postives = 92/97 (94.85%), Query Frame = 2 
Query:  431 NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            NRLYRERLLFLGQ V+S+ISNQLIG+MVYLSIEN+TKDLYLFINSPGGWVIPG+AIYDTMQFV+PDV TICMGLAASMGSFLLA G  TKRLAFPHA
Sbjct:   25 NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIENDTKDLYLFINSPGGWVIPGVAIYDTMQFVQPDVHTICMGLAASMGSFLLAGGEITKRLAFPHA 121
[Close]
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP_GOSBA (ATP-dependent Clp protease proteolytic subunit OS=Gossypium barbadense GN=clpP PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.095e-43
Identity = 86/97 (88.66%), Postives = 92/97 (94.85%), Query Frame = 2 
Query:  431 NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            NRLYRERLLFLGQ V+S+ISNQLIG+MVYLSIEN+TKDLYLFINSPGGWVIPG+AIYDTMQFV+PDV TICMGLAASMGSFLLA G  TKRLAFPHA
Sbjct:   25 NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIENDTKDLYLFINSPGGWVIPGVAIYDTMQFVQPDVHTICMGLAASMGSFLLAGGEITKRLAFPHA 121
[Close]
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP_PHAVU (ATP-dependent Clp protease proteolytic subunit OS=Phaseolus vulgaris GN=clpP PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 2.439e-43
Identity = 85/100 (85.00%), Postives = 93/100 (93.00%), Query Frame = 2 
Query:  422 ILINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            ILINRLYRERLLFLGQ V+S+ISNQLI +M+YLSIE E KDLYLFINSPGGWVIPGIA+YDTMQFV+PDVQT+C+GLAASMGSFLLA G  TKRLAFPHA
Sbjct:   23 ILINRLYRERLLFLGQDVDSEISNQLISLMIYLSIEKENKDLYLFINSPGGWVIPGIALYDTMQFVQPDVQTVCLGLAASMGSFLLAGGTITKRLAFPHA 122
[Close]
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP_TOBAC (ATP-dependent Clp protease proteolytic subunit OS=Nicotiana tabacum GN=clpP PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 3.185e-43
Identity = 85/97 (87.63%), Postives = 91/97 (93.81%), Query Frame = 2 
Query:  431 NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            NRLYRERLLFLGQ V+S+ISNQLIG+MVYLSIE+ETKDLYLFINSPGGWVIPG+AIYDTMQFVRPDV TICMGLAASMGSF+L  G  TKRLAFPHA
Sbjct:   25 NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDETKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHA 121
[Close]
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP_NICTO (ATP-dependent Clp protease proteolytic subunit OS=Nicotiana tomentosiformis GN=clpP PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 3.185e-43
Identity = 85/97 (87.63%), Postives = 91/97 (93.81%), Query Frame = 2 
Query:  431 NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            NRLYRERLLFLGQ V+S+ISNQLIG+MVYLSIE+ETKDLYLFINSPGGWVIPG+AIYDTMQFVRPDV TICMGLAASMGSF+L  G  TKRLAFPHA
Sbjct:   25 NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDETKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHA 121
[Close]
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP_NICSY (ATP-dependent Clp protease proteolytic subunit OS=Nicotiana sylvestris GN=clpP PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 3.185e-43
Identity = 85/97 (87.63%), Postives = 91/97 (93.81%), Query Frame = 2 
Query:  431 NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            NRLYRERLLFLGQ V+S+ISNQLIG+MVYLSIE+ETKDLYLFINSPGGWVIPG+AIYDTMQFVRPDV TICMGLAASMGSF+L  G  TKRLAFPHA
Sbjct:   25 NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDETKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHA 121
[Close]
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP_SPIOL (ATP-dependent Clp protease proteolytic subunit OS=Spinacia oleracea GN=clpP PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 7.096e-43
Identity = 84/97 (86.60%), Postives = 91/97 (93.81%), Query Frame = 2 
Query:  431 NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            NRLYRERLLFLGQ V+S+ISNQLIG+MVYLSIE++TKDLYLFINSPGGWVIPG+AIYDTMQFVRPDV TICMGLAASMGSF+L  G  TKRLAFPHA
Sbjct:   25 NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHA 121
[Close]
BLAST of DY305744 vs. ExPASy Swiss-Prot
Match: CLPP_COFAR (ATP-dependent Clp protease proteolytic subunit OS=Coffea arabica GN=clpP PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 7.096e-43
Identity = 83/97 (85.57%), Postives = 91/97 (93.81%), Query Frame = 2 
Query:  431 NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 721
            NRLYRERLLFLGQ V+S+ISNQLIG+M+YLSIE++TKDLYLFINSPGGWVIPG+AIYDTMQFVRPDV TICMGLAASMGSF+L  G  TKRLAFPHA
Sbjct:   25 NRLYRERLLFLGQAVDSEISNQLIGLMIYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHA 121
The following BLAST results are available for this feature:
BLAST of DY305744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_CITSI6.626e-4997.98ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DAUCA1.689e-4489.69ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GOSHI1.095e-4388.66ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GOSBA1.095e-4388.66ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PHAVU2.439e-4385.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_TOBAC3.185e-4387.63ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NICTO3.185e-4387.63ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NICSY3.185e-4387.63ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SPIOL7.096e-4386.60ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_COFAR7.096e-4385.57ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2AF08RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305744 ID=DY305744; Name=DY305744; organism=Citrus sinensis; type=EST; length=1276bp
GATAGCAAAAAAGAGACGTGGTATTGGGGTCATTTGTCTTATATGTGCAA
ATCAAAATCGGGCGAATCCTTACTCGGAGTAGAGCCTAAACCTAAAAAAA
TGGAAGAAGCCCATTCAATTCAGGAACAAGAAAATGGCATCGTGATTTTT
GGATCGGATCTCGATGAAAAAATACATCAATGAAAAGTTAGTTCGATAAG
TCGATAAGTTTAGTGAATTTCTTTTTTATATTAGAATATTATAGGTCTAG
GAAACCGGCTAAACTCAGCGTTCTTGAAAACCGGAAGAAAAGCCCCTCGA
TAGAAGCGAGGAAAAAAGAAAGGAAAGGGGCTAGGAGCTACACATTGATT
TGTTTTTCGCAAGTTTTGTTGAACCGTATGCATCAAAAGATGCCTGTACG
GCTCCGAAAGGATACTGTTTTATCCTAATCAACCGACTTTATCGAGAAAG
ATTACTTTTTTTAGGTCAAATGGTTGAGAGCGATATCTCGAATCAACTTA
TTGGTATTATGGTATATCTCAGTATAGAGAACGAGACCAAGGATTTGTAT
TTATTTATTAACTCTCCTGGCGGATGGGTAATACCCGGGATAGCAATTTA
TGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGAT
TGGCCGCCTCCATGGGGTCTTTTCTCCTGGCCGCCGGAGCAAGTACCAAA
CGTCTAGCATTCCCTCACGCTTGGCGCCAATGAGTTTTTTATTTGAGAGA
AAAAAGAAGACTATGCCTTCGCCATATGAATTCTTAATATTAAGTAATAA
TAGCATGGCACTTCGAATTCGATATGAAATTGTTAAGTGTTTTTTTTTTT
TCAAAATATTTGATTATGTATCGAAGCAATAGTATGAGATAAAGAAGGGG
GTATTCCGAGTTTATCTTTCCTTATCGGAGGGCCTATTGCAGCGGCCACA
CACCTTTTTTCCAGCCCAAAGAGGGTCTTAACAATTAAACATTAAACAAG
AATTTAAGGGTATGGAAAAAAATACAAAAAATAAAAAAAAAAAGAATTAA
TTTTTGAATTTATTTTCTTTTTTTTTTTTTTTGATTTTAAAAAAAAAAAA
AAAAAAAAACTCTAAGGGGGGGGGGCCGGGGACACCCCATTTTCCCCCCC
CTTAAAAGGGGATATTTAAATATAAAAAATTTTCCCGGGGGGCCCCCGCC
CTTTTTTTTTTAAACAACCCCCCCCGGTGGGGGGGCGGGGGGGGAAAAAA
AACCCCCCCCGGGGGGGTGTTGTTTT
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