DY305739

Overview
NameDY305739
Unique NameDY305739
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1043
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305739 vs. ExPASy Swiss-Prot
Match: PEX1_HUMAN (Peroxisome biogenesis factor 1 OS=Homo sapiens GN=PEX1 PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.667e-52
Identity = 101/140 (72.14%), Postives = 119/140 (85.00%), Query Frame = 1
Query:   19 VKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSG 438
            VKGPELL+KYIGASEQAVRDIF +A AA PC+LFFDEF+SIAP+RGHDNTGVTDRVVNQ LT+LDGVE L GV+V AATSRPDL+D ALLRPGRLD+ ++C  P    RL+IL V+S  LPLADDVDL+ +A +T+ F+G
Sbjct:  905 VKGPELLSKYIGASEQAVRDIFIRAQAAKPCILFFDEFESIAPRRGHDNTGVTDRVVNQLLTQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPPPDQVSRLEILNVLSDSLPLADDVDLQHVASVTDSFTG 1044          
BLAST of DY305739 vs. ExPASy Swiss-Prot
Match: PEX1_DICDI (Peroxisome biogenesis factor 1 OS=Dictyostelium discoideum GN=pex1 PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 3.713e-52
Identity = 99/169 (58.58%), Postives = 128/169 (75.74%), Query Frame = 1
Query:   19 VKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGXXXXXXXXXXXXXXVHEILNNIDSNEPGK 525
            VKGPELLNKYIG+SEQ VRD+FS+A++A PC+LFFDEFDSIAP+RGHDN+GVTDRVVNQFLT+LDGVE LTGV+V AATSRPDL+D ALLRPGRLD+ L+C+ P   ERLDIL  +  K+ L+  + LE ++  T+ ++G              +HE +N+++  +  K
Sbjct:  931 VKGPELLNKYIGSSEQGVRDVFSRASSAKPCVLFFDEFDSIAPRRGHDNSGVTDRVVNQFLTQLDGVEGLTGVYVLAATSRPDLIDPALLRPGRLDKSLYCNIPEFNERLDILTCLKSKMNLSPSISLEQLSTNTQYYTGADLRALMYNAQLKSIHEWMNHLEEEKKRK 1099          
BLAST of DY305739 vs. ExPASy Swiss-Prot
Match: PEX1_MOUSE (Peroxisome biogenesis factor 1 OS=Mus musculus GN=Pex1 PE=1 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 1.080e-51
Identity = 98/140 (70.00%), Postives = 119/140 (85.00%), Query Frame = 1
Query:   19 VKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSG 438
            +KGPELL+KYIGASEQAVRD+F +A AA PC+LFFDEF+SIAP+RGHDNTGVTDRVVNQ LT+LDGVE L GV+V AATSRPDL+D ALLRPGRLD+ ++C  P    RL+IL V+S+ L LADDVDL+ +A +T+ F+G
Sbjct:  906 IKGPELLSKYIGASEQAVRDVFIRAQAAKPCILFFDEFESIAPRRGHDNTGVTDRVVNQLLTQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPPPDQVSRLEILTVLSKSLALADDVDLQHVASVTDSFTG 1045          
BLAST of DY305739 vs. ExPASy Swiss-Prot
Match: PEX1_PICPA (Peroxisome biosynthesis protein PAS1 OS=Pichia pastoris GN=PEX1 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 6.554e-49
Identity = 95/164 (57.93%), Postives = 121/164 (73.78%), Query Frame = 1
Query:   19 VKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGXXXXXXXXXXXXXXVHEILNNIDS 510
            +KGPE+LNKYIG SEQ+VR++F +A AA PC+LFFDEFDSIAPKRGHD+TGVTDRVVNQ LT++DG E L GV+V AATSRPDL+D+ALLRPGRLD+ + CD P   +RLDIL+ ++R + ++  V+L ++A    GFSG              VHE L   +S
Sbjct:  864 IKGPEILNKYIGPSEQSVRELFERAQAAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQMLTQMDGAEGLDGVYVLAATSRPDLIDSALLRPGRLDKSVICDMPDFDDRLDILQSVTRNMNVSKSVNLSSVAGECSGFSGADLQALAYNAYLKAVHEKLTKDES 1027          
BLAST of DY305739 vs. ExPASy Swiss-Prot
Match: PEX1_YEAST (Peroxisomal ATPase PEX1 OS=Saccharomyces cerevisiae GN=PEX1 PE=1 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 1.236e-47
Identity = 96/175 (54.86%), Postives = 121/175 (69.14%), Query Frame = 1
Query:   19 VKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVI---------SRKLPLADDVDLEAIAHMTEGFSGXXXXXXXXXXXXXXVHEILNNIDSNE 516
            VKGPE+LNK+IGASEQ +R++F +A +  PC+LFFDEFDSIAPKRGHD+TGVTDRVVNQ LT++DG E L GV++ AATSRPDL+D+ALLRPGRLD+ + C+ P+  ERLDIL+ I          +K  L  + DL+ IA  T GFSG              VH  L+  D +E
Sbjct:  762 VKGPEILNKFIGASEQNIRELFERAQSVKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTQMDGAEGLDGVYILAATSRPDLIDSALLRPGRLDKSVICNIPTESERLDILQAIVNSKDKDTGQKKFALEKNADLKLIAEKTAGFSGADLQGLCYNAYLKSVHRWLSAADQSE 936          
BLAST of DY305739 vs. ExPASy Swiss-Prot
Match: PEX1_SCHPO (Peroxisomal ATPase pex1 OS=Schizosaccharomyces pombe GN=pex1 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.367e-46
Identity = 93/214 (43.46%), Postives = 135/214 (63.08%), Query Frame = 1
Query:   19 VKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGXXXXXXXXXXXXXXVHEILNNIDSNEPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLDSKKSVAAQ 660
            +KGPELL+KYIG SEQ VRD+FS+A  A PC+LFFDEFDS+AP+RG D+TGVTDRVVNQ LT++DG E L GV++ AAT+RPD++D ALLRPGRLD+L+FCD P+  ERL++L+ ++ +  + +   L+ ++ +T+G++               VH++L  +  N        +     +  SK   S+        Y+   Q +   KSV  +
Sbjct:  671 IKGPELLDKYIGKSEQGVRDLFSRAQMAKPCVLFFDEFDSVAPRRGQDSTGVTDRVVNQILTQMDGAESLDGVYIVAATTRPDMIDPALLRPGRLDKLIFCDLPNEEERLEVLQKLANRFHIENAAMLKKLSTLTDGYTYADLSSLLYDAHLIAVHKLLKRVSINAVDPSQTTSSFTNLTTESKRNASMLALPPESRYNQNMQSMSDSKSVVIE 884          
BLAST of DY305739 vs. ExPASy Swiss-Prot
Match: NVL_DICDI (Putative ribosome biogenesis ATPase nvl OS=Dictyostelium discoideum GN=nvl PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.013e-41
Identity = 91/200 (45.50%), Postives = 129/200 (64.50%), Query Frame = 1
Query:   19 VKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAH--MTEGFSGXXXXXXXXXXXXXXVHEILNNIDSNEPGKMPVITDALLKSIASKARPSVSEAEKL 603
            VKGPELLNKY+G SE+AVR +F +A A++PC++FFDEFD++APKRG  + G    T+RVVNQ LTE+DG+E  + VF+ AAT+RPD++DAA+ RPGRLD++++   PSP ER +ILK ++ K+P+  DVDL  +        FSG               H I    D+N      V  +  + ++ SK +PSVS  ++L
Sbjct:  631 VKGPELLNKYVGESERAVRQVFQRAAASSPCVIFFDEFDALAPKRGGGDGGGNQATERVVNQLLTEMDGLEKRSEVFIIAATNRPDIIDAAMCRPGRLDKMVYVPLPSPEERCEILKTLTHKIPIHQDVDLIKVGTDLRCHSFSGADLSLLVKEAAN---HAISRGFDNNSTEPDTVTMEDFIFAL-SKIKPSVSRKDEL 826          
BLAST of DY305739 vs. ExPASy Swiss-Prot
Match: Y1156_METJA (Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus jannaschii GN=MJ1156 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 5.030e-41
Identity = 81/141 (57.45%), Postives = 110/141 (78.01%), Query Frame = 1
Query:   19 VKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD-NTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSG 438
            VKGPE+ +K++G SE+A+R+IF KA  +APC++FFDE D+IAPKRG D ++ VTD+VVNQ LTELDG+E    V V AAT+RPD++D ALLRPGRLDR++    P  + RLDI K+ +R + LA+DV+LE +A  TEG++G
Sbjct:  517 VKGPEIFSKWVGESEKAIREIFRKARQSAPCIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLLTELDGMEEPKDVVVIAATNRPDIIDPALLRPGRLDRVILVPVPDEKARLDIFKIHTRSMNLAEDVNLEELAKKTEGYTG 657          

HSP 2 Score: 126.331 bits (316), Expect = 2.863e-28
Identity = 66/163 (40.49%), Postives = 97/163 (59.51%), Query Frame = 1
Query:   19 VKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGXXXXXXXXXXXXXXVHEILNNID 507
            + GPE+++KY+G +E+ +R IF +A   AP ++F DE D+IAPKR      V  R+V Q LT +DG++    V V  AT+RP+ LD AL RPGR DR +    P    R +IL++ +R +PLA+DVDL+ +A +T GF G              +  +L +ID
Sbjct:  244 INGPEIMSKYVGETEENLRKIFEEAEENAPSIIFIDEIDAIAPKRDEATGEVERRLVAQLLTLMDGLKGRGQVVVIGATNRPNALDPALRRPGRFDREIVIGVPDREGRKEILQIHTRNMPLAEDVDLDYLADVTHGFVGADLAALCKEAAMRALRRVLPSID 406          
BLAST of DY305739 vs. ExPASy Swiss-Prot
Match: Y1297_ARCFU (Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus GN=AF_1297 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 9.486e-40
Identity = 88/198 (44.44%), Postives = 127/198 (64.14%), Query Frame = 1
Query:   19 VKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH-DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGXXXXXXXXXXXXXXVHEI----LNNIDSNEPGKMPVITDALLKSIASKARPSVSEAE 597
            VKGPELL+K++G SE+ VR++F KA   APC++FFDE DS+AP+RG   ++ VT+RVV+Q LTELDG+E L  V V AAT+RPD++D ALLRPGRL+R ++   P  + R++I K+  R  PLADDV++E +A  TEG+SG              + E+    +   ++ E  K   IT    +    K RPS+++ +
Sbjct:  520 VKGPELLSKWVGESEKHVREMFRKARQVAPCVIFFDEIDSLAPRRGGIGDSHVTERVVSQLLTELDGLEELKDVVVIAATNRPDMIDPALLRPGRLERHIYIPPPDKKARVEIFKIHLRGKPLADDVNIEELAEKTEGYSGADIEAVCREAGMLAIRELIKPGMTREEAKEAAKKLKITKKHFEEALKKVRPSLTKED 717          

HSP 2 Score: 137.887 bits (346), Expect = 9.508e-32
Identity = 73/163 (44.79%), Postives = 97/163 (59.51%), Query Frame = 1
Query:   19 VKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGXXXXXXXXXXXXXXVHEILNNID 507
            + GPE+++KY G SEQ +R+IF +A   AP ++F DE DSIAPKR      V  RVV Q L  +DG+E    V V AAT+RPD +D AL RPGR DR +    P    R +IL++ +RK+PLA+DVDLE +A +T GF G              +  +L  ID
Sbjct:  247 ISGPEIMSKYYGESEQRLREIFEEAKENAPSIIFIDEIDSIAPKREEVTGEVERRVVAQLLALMDGLEARGDVIVIAATNRPDAIDPALRRPGRFDREIEIGVPDKEGRKEILEIHTRKMPLAEDVDLEELAELTNGFVGADLEALCKEAAMHALRRVLPEID 409          
BLAST of DY305739 vs. ExPASy Swiss-Prot
Match: TERA_DROME (Transitional endoplasmic reticulum ATPase TER94 OS=Drosophila melanogaster GN=TER94 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 9.486e-40
Identity = 97/234 (41.45%), Postives = 129/234 (55.13%), Query Frame = 1
Query:   19 VKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH---DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGXXXXXXXXXXXXXXVHEIL---------------NNIDSNEPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLDSKKSVAAQSR 666
            VKGPELL  + G SE  VRDIF KA +AAPC+LFFDE DSIA  RG    D  G  DRV+NQ LTE+DG+     VF+  AT+RPD++D A+LRPGRLD+L++   P  + R  ILK   RK PLA +VDL  IA +T+GFSG              + + +               + +D +E   +P IT A  +     AR SVS+ + +R Y ++ Q L   +      R
Sbjct:  539 VKGPELLTMWFGESEANVRDIFDKARSAAPCVLFFDELDSIAKARGGNVGDAGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDDKSREAILKANLRKSPLAKEVDLTYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIRREKERAENQNSAMDMDEDDPVPEITSAHFEEAMKFARRSVSDND-IRKYEMFAQTLQQSRGFGQNFR 771          

HSP 2 Score: 111.309 bits (277), Expect = 9.530e-24
Identity = 60/163 (36.81%), Postives = 93/163 (57.06%), Query Frame = 1
Query:   19 VKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGXXXXXXXXXXXXXXVHEILNNID 507
            + GPE+++K  G SE  +R  F +A   +P ++F DE D+IAPKR   +  V  R+V+Q LT +DG++  + + V AAT+RP+ +D AL R GR DR +    P    RL++L++ ++ + L DDVDLE IA  + G  G              + E ++ ID
Sbjct:  266 INGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEVLRIHTKNMKLHDDVDLEQIAAESHGHVGADLASLCSEAALQQIREKMDLID 428          
The following BLAST results are available for this feature:
BLAST of DY305739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
PEX1_HUMAN1.667e-5272.14Peroxisome biogenesis factor 1 OS=Homo sapiens GN=... [more]
PEX1_DICDI3.713e-5258.58Peroxisome biogenesis factor 1 OS=Dictyostelium di... [more]
PEX1_MOUSE1.080e-5170.00Peroxisome biogenesis factor 1 OS=Mus musculus GN=... [more]
PEX1_PICPA6.554e-4957.93Peroxisome biosynthesis protein PAS1 OS=Pichia pas... [more]
PEX1_YEAST1.236e-4754.86Peroxisomal ATPase PEX1 OS=Saccharomyces cerevisia... [more]
PEX1_SCHPO1.367e-4643.46Peroxisomal ATPase pex1 OS=Schizosaccharomyces pom... [more]
NVL_DICDI1.013e-4145.50Putative ribosome biogenesis ATPase nvl OS=Dictyos... [more]
Y1156_METJA5.030e-4157.45Cell division cycle protein 48 homolog MJ1156 OS=M... [more]
Y1297_ARCFU9.486e-4044.44Cell division cycle protein 48 homolog AF_1297 OS=... [more]
TERA_DROME9.486e-4041.45Transitional endoplasmic reticulum ATPase TER94 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM2AF01RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305739 ID=DY305739; Name=DY305739; organism=Citrus sinensis; type=EST; length=1043bp
TGCCGAATCGGCACGAGGGTGAAAGGGCCTGAGCTGTTGAACAAATACAT
TGGTGCTTCTGAGCAAGCTGTTCGGGATATATTCTCAAAAGCAACTGCTG
CAGCACCATGCCTCCTCTTTTTTGATGAATTTGATTCTATTGCCCCAAAG
CGAGGGCATGATAATACTGGAGTGACTGATCGTGTTGTTAATCAGTTTCT
GACTGAGTTAGATGGCGTTGAAGTGTTGACTGGTGTATTTGTGTTTGCTG
CAACAAGTAGACCGGATCTACTTGATGCTGCCCTGTTAAGACCTGGTAGG
CTGGATCGCCTTCTCTTCTGTGATTTTCCATCTCCACGTGAGAGGTTGGA
TATTCTTAAAGTTATTTCTAGAAAGTTACCATTGGCCGATGATGTTGATT
TAGAAGCCATAGCTCATATGACAGAAGGATTTAGTGGAGCTGATCTCCAA
GCACTTCTCTCAGATGCACAGCTCTCAGCTGTTCATGAAATTTTAAATAA
TATTGATAGCAATGAGCCTGGGAAAATGCCAGTCATAACCGATGCTCTAC
TGAAGTCTATAGCTTCCAAGGCAAGACCATCAGTTTCAGAAGCTGAGAAG
CTGAGACTATATAGCATTTACGGACAGTTTCTTGATTCAAAGAAATCTGT
TGCTGCTCAGTCAAGAGATGCGAAAGGCAAGAGAGCAACTCTAGCATAAC
AACAAACCAGTCTCGCAGATTTTTCAGGGATGGAAGGCAACAAGCTATGT
AAATTATTTCAGCGCAGCTGCTTGAAACGGACCTTAATTACTTTTGTTTT
TCCTCATTTTGAGTTCATTCATTACAACTGTGGGCATAAGATTGAAAAAT
GAGCAGCGGAGAGCTGTAAGTTATTCAATCCCTTCATACTCATTTTCAAG
GGCATGGTTGTTTAAATCTTTTCTGTCTATTGTGTTAGTGAAACAATAAA
AATAACCCTAGTGAATGAAAACCAAAATGACCAGTGGAAAAATTTTGTAA
AACTTGTTTTGAATTTTACCGGAATAATTTAAAGAAGGGTACC
back to top