DY305715

Overview
NameDY305715
Unique NameDY305715
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1258
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6726 contig Csv1_Contig6726:1..1258. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL1O_ARATH (RING-H2 finger protein ATL1O OS=Arabidopsis thaliana GN=ATL1O PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 3.130e-35
Identity = 99/272 (36.40%), Postives = 137/272 (50.37%), Query Frame = 2
Query:   80 QRHRKFIKYSINEA-ATADICPSYCD-LSDTSSFCSPPCLT---SCPSYCHNFLQSLIPTPSPVTFKYHIHHKSRKFLIITASALVTTIVAVLC--YVVFVKFY---LRRRSSSEPRILNETHDDFLDEDHGP--VVDHPIWYINTVGLQSSVIREIAVLKYKKSDGLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKINHAARAPPSSSTWESNNEDSGTRESTQVGILTENGGRNDMESEIGAVERR 859
            ++HRK      +E   T D     CD +   + +  P   T     P +  +   S  P+PS           S     I+   +   ++A+L   + +  KF+   + R +    +  NE +D  ++E+      VDHPIW I T GLQ S+I  I +  YK+ DGL+E T+C VCL+EF+EDE+LRLLPKCNHAFHISCIDTWL SHTNCPLCR+ I  I  +   P  S   E     SG+          EN G +  E + G +E R
Sbjct:    4 KKHRKLFPTLASETNKTLDCSNGVCDPICPYNCYPEPDYYTISPQLPPWSSSPQPSPCPSPSISAVYLPSQDSSSSLDAISIITITGAVLAILLTGFFLVAKFFSDSVNRVNQGTYQSDNEDNDTVMEEEFQDREQVDHPIWLIRTTGLQQSIINSITICNYKRGDGLIERTDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRAGIAMI--SVTTPRYSGPVEVTPGGSGSH--------LENDGVD--EEDHGEIENR 263          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL5F_ARATH (RING-H2 finger protein ATL5F OS=Arabidopsis thaliana GN=ATL5F PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 4.997e-33
Identity = 71/163 (43.56%), Postives = 103/163 (63.19%), Query Frame = 2
Query:  296 LIITASALVTTIVAVLCYVVFVKFYLRRR-----SSSEPRILNETHDDFLDEDHGPVVDHPIWYINTVGLQSSVIREIAVLKYKKSDGLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKINHAARAPPSSSTWESNNEDS 769
            L+ T+  +V +I+  L  V F+  ++ ++     +S  P   N+  D+   E+      H +W I TVGL  S I  I V+ +KK +G+++GTECSVCL+EF+EDE+LRLLPKC+HAFH++CIDTWL SH NCPLCR+P++ I      PP   T  ++  DS
Sbjct:   41 LLPTSICVVGSIILFLFLVFFLYLHITQQRRISAASVTPGDTNQQEDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGIIDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITE----PPHQETETNHQPDS 199          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL5G_ARATH (Probable RING-H2 finger protein ATL5G OS=Arabidopsis thaliana GN=ATL5G PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 5.525e-32
Identity = 96/284 (33.80%), Postives = 134/284 (47.18%), Query Frame = 2
Query:  200 CPSYCHNFLQSLIPTPSPVTFKYHIHHKSRKF---LIITASALVTTIVAVLCYVVFVKFYLRRR---SSSEPRILNETHDDFLDEDHGPVVDHPIWYINTVGLQSSVIREIAVLKYKKSDGLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRS----------------PIVKINHAARAPPSSSTWESN------NEDSGTRESTQVGILTENGGRN-DMESEIGAVERRNITKE----MIKILMTRYNNKKISFLGILNSLQDE 952
            C  YC  +   + P P P  F       S      L+I    ++T+ + ++ Y   +  Y  R    SSSE   LN   + F                N  GL  S+I+ I V KYK  DG V+G++CSVCLSEF+E+E+LRLLPKCNHAFH+ CIDTWL+SH+NCPLCR+                 +V  N +  A  + S  E N         +G  +S  V    E G RN D  SE+   E R  TK+     I+  ++  +   +S   +L  ++DE
Sbjct:   22 CNIYCPQWCYLIFPPPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFSSTQRIST-------NGDGLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGVNNPTASVGQNVSVVVANQSNSAHQTGSVSEINLNLAGYESQTGDFDSVVVIEDLEIGSRNSDARSELQLPEERRETKDEDSLPIRRSVSLNSGVVVSIADVLREIEDE 298          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL3A_ARATH (RING-H2 finger protein ATL3A OS=Arabidopsis thaliana GN=ATL3A PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 3.352e-29
Identity = 81/229 (35.37%), Postives = 115/229 (50.22%), Query Frame = 2
Query:  200 CPSYCHNFLQSLIPTPSPVTFKYHIHHKSRKF---LIITASALVTTIVAVLCYVVFVKFYLRRR---SSSEPRILNETHDDFL----DEDHGPVVDHPIWYINTVG---LQSSVIREIAVLKYKKSDGLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKINHAARAPPSSSTWESNNEDSGTRESTQVGI---LTENGGRNDMESE 838
            C  YC  +   + P P            S  F   LI     L +  + V  Y +  K+  RRR   SS+    +N    D+     + ++     +P   I   G   L  S+I+ I V KY+K DG VE ++CSVCLSEFQE+E+LRLLPKCNHAFH+ CIDTWL+SH+NCPLCR+ IV  +       ++    + N    T + + V +   L  +  RN+  +E
Sbjct:   25 CSVYCPQWCYVIFPPPPSFYLDDEDDSSSSDFSPLLIALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAAAINRISSDYTWQGTNNNNNNGATNPNQTIGGGGGDGLDESLIKSITVYKYRKMDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIVTSSAVEIVDLTNQQIVTENNSISTGDDSVVVVNLDLENSRSRNETVNE 253          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL4H_ARATH (Putative RING-H2 finger protein ATL4H OS=Arabidopsis thaliana GN=ATL4H PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.248e-25
Identity = 65/184 (35.33%), Postives = 97/184 (52.72%), Query Frame = 2
Query:  188 CLTSCPSYCH--NFLQSLIPTPSPVTFKYHIH-----HKSRKFLIITASALVTTIVAVLCYVVFVKFYLRRRSSSEPRILNETHDDFLD---EDHGPVVDHPIWYINTVGLQSSVIREIAVLKYKKSDG--LVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIV 703
            C T CP +C   NF      +P P++++  ++     + +   L+I    +  T   +  Y   V  Y    +++E    +   D  LD    + G   D      +T GL  ++I++I   K KK      + GT+CS+CL EF EDE+LRLLPKCNH FH+ CID WL+SH+NCPLCR+ I+
Sbjct:   50 CSTFCPQWCTYINF------SPPPISYEQFLNDGVASNPNLSPLVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASESGRSDIILDVNSPERGDQDDPFALESSTAGLDDTLIKKIGFFKLKKHQNGFKINGTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKII 227          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL1D_ARATH (RING-H2 finger protein ATL1D OS=Arabidopsis thaliana GN=ATL1D PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 5.538e-24
Identity = 67/221 (30.32%), Postives = 112/221 (50.68%), Query Frame = 2
Query:  245 PSPVTFKYHIHHKS---------RKFLIITASALVTTIVAVLCYVV--FVKFYLRRRSSSEPRILNETHD--DFLDEDHGPVVDHPIWYINTVGLQSSVIREIAVLKYKKSDGLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKINHAARAPPSSSTWESNNEDSGTRESTQVGILTENG-GRNDMESEIGAVERRNI 865
            PSP+T  + +   S         R   II    ++ +++  +C ++   V++YL+++ S+     NE++   +F D D        +++++  GL  ++I  + V  YK+  G  E  +C+VCL EF ED+ LRLLP C+HAFHI CIDTWL S++ CPLCR  +  + H    P  +  + + ++  G    + V    EN  G+      +G     NI
Sbjct:   25 PSPITLNHQLTDSSSSSSSGGNNRISPIILFIIVLLSVIFFICSILHLLVRYYLKKKRSNLSSSPNESNQNPEFSDSDTYQRQLQQLFHLHDSGLDQALIDALPVFLYKEIKGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCPLCRGTLFSLGHQFEYPDFNFGFFAGDDGGGGVRVSPVQKPAENEIGKRVFSVRLGKFRSSNI 245          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL2D_ARATH (Putative RING-H2 finger protein ATL2D OS=Arabidopsis thaliana GN=ATL2D PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.275e-20
Identity = 60/190 (31.58%), Postives = 94/190 (49.47%), Query Frame = 2
Query:  485 GLQSSVIREIAVLKYKKSDGLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKINHAARAPPSSSTWESNNEDSGTRESTQVGILTE-NGGRNDMESEIGAVERRNITKEMI-----------KILMTRYNNKKISFLGILNSLQDESCSWEILIL--EKLTKISKNQF 1012
            GL    I  +   ++    GL +G ECSVCLS+F++ E LRLLPKC HAFHI CID WL  H  CPLCR+ +   +  +    SS++    N+     E +++ I  E   G ND  S   +  R+ + K ++           K LM ++N++ +    +  +      S ++  L  E L  +S ++F
Sbjct:   98 GLDKKAIESLPFFRFSALKGLKQGLECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNIEDDLSVLGNSSTSLRILNQSETREEDSRLEIYIEREEGTNDGSSRFSSF-RKILKKSLLLEREGNENIDEKKLMHKFNHRIVVSDAVFKNRWSNITSSDLTFLTSEMLNSVSSDRF 286          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL1N_ARATH (RING-H2 finger protein ATL1N OS=Arabidopsis thaliana GN=ATL1N PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 2.408e-19
Identity = 53/142 (37.32%), Postives = 74/142 (52.11%), Query Frame = 2
Query:  305 TASALVTTIVAVLCYVVFVKFYLRRRSSSEPRILNETHDDFLDEDHGPVVDHPIWYINTV----GLQSSVIREIAVLKYKKSDGL---VEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKI 709
            T + L+  +V+V  ++ F   Y+RR             +  +  D+G   D   W         GL +S+I      +Y     L    E  ECSVCL+EF++DETLRL+PKC H FH  CID WLRSHT CPLCR+ ++ +
Sbjct:   62 TMAILMIVLVSVFFFLGFFSVYIRR-----------CLERVMGMDYGNPNDAGNWLATNRQQARGLDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPLCRADLIPV 192          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL1A_ARATH (RING-H2 finger protein ATL1A OS=Arabidopsis thaliana GN=ATL1A PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 4.107e-19
Identity = 61/177 (34.46%), Postives = 82/177 (46.33%), Query Frame = 2
Query:  239 PTPSPVTFKYHIHHKSRK------FLIITASALVTTIVAVLCYVVFV----------KFYLRRRSSSEPRILNETHDDFLDEDHGPVVDHPIWYINTVGLQSSVIREIAVLKYKKSDGLV-------EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPI 700
            P P   TF   I  ++         L I    ++ T   ++ Y +FV            + RRR SS               D  P++ +    +N  GL  S IR I V K+KK D +           ECSVCL+EFQEDE LR++P C H FHI CID WL+ + NCPLCR+ +
Sbjct:   19 PPPPSTTFTSPIFPRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQIDIFRRRRRSS---------------DQNPLMIYSPHEVNR-GLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSV 179          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL5K_ARATH (RING-H2 finger protein ATL5K OS=Arabidopsis thaliana GN=ATL5K PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.195e-18
Identity = 59/184 (32.07%), Postives = 87/184 (47.28%), Query Frame = 2
Query:  239 PTPSPVTFKYHIHHKSRKFLIITASALVTTIVAVLCYVVFV--------------KFYL--RRRSSSEPRILNETHDDFLDEDHGPVVDHPIWYINTVGLQSSVIREIAVLKYKK----SDGLVEGT----------ECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPI 700
            P P P+  +      S   L +    ++ T   ++ Y VFV              +F L  RRR+  +P ++                      + + GL  SVIR I + K+KK    +DG+  G           ECSVCLSEFQ++E LR++P C+H FHI CID WL+++ NCPLCR+ +
Sbjct:   18 PPPPPIFHRASSTGTSFPILAVAVIGILATAFLLVSYYVFVIKCCLNWHRIDILGRFSLSRRRRNDQDPLMVYSPE------------------LRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRV 183          
The following BLAST results are available for this feature:
BLAST of DY305715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
ATL1O_ARATH3.130e-3536.40RING-H2 finger protein ATL1O OS=Arabidopsis thalia... [more]
ATL5F_ARATH4.997e-3343.56RING-H2 finger protein ATL5F OS=Arabidopsis thalia... [more]
ATL5G_ARATH5.525e-3233.80Probable RING-H2 finger protein ATL5G OS=Arabidops... [more]
ATL3A_ARATH3.352e-2935.37RING-H2 finger protein ATL3A OS=Arabidopsis thalia... [more]
ATL4H_ARATH2.248e-2535.33Putative RING-H2 finger protein ATL4H OS=Arabidops... [more]
ATL1D_ARATH5.538e-2430.32RING-H2 finger protein ATL1D OS=Arabidopsis thalia... [more]
ATL2D_ARATH8.275e-2031.58Putative RING-H2 finger protein ATL2D OS=Arabidops... [more]
ATL1N_ARATH2.408e-1937.32RING-H2 finger protein ATL1N OS=Arabidopsis thalia... [more]
ATL1A_ARATH4.107e-1934.46RING-H2 finger protein ATL1A OS=Arabidopsis thalia... [more]
ATL5K_ARATH1.195e-1832.07RING-H2 finger protein ATL5K OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2AC02RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305715 ID=DY305715; Name=DY305715; organism=Citrus sinensis; type=EST; length=1258bp
CTTTTTTCTCTCTCCTTCTTTCTGTTTCTTCTCTTTTTTTTGATGTTTTC
ATTTTCTTGATAACATGGAGTTGCAGCTGCAACGACATAGAAAGTTCATA
AAATATTCAATCAACGAGGCAGCAACGGCAGATATATGTCCATCATATTG
TGACTTATCTGATACATCAAGCTTTTGTAGCCCACCATGTTTAACTTCTT
GTCCAAGCTACTGCCACAATTTTTTGCAATCCCTAATCCCTACTCCCAGT
CCAGTGACATTCAAATATCATATTCATCACAAATCTCGCAAGTTCTTGAT
CATTACAGCCTCAGCTCTGGTTACAACGATTGTTGCAGTTTTATGTTATG
TTGTTTTTGTTAAGTTCTATTTAAGAAGGAGATCATCATCGGAGCCGCGA
ATACTAAACGAAACCCATGATGATTTTCTTGATGAGGATCATGGCCCTGT
GGTTGATCACCCAATCTGGTACATCAACACCGTTGGTCTGCAGTCATCGG
TCATTAGAGAGATCGCTGTTTTGAAGTATAAAAAAAGTGATGGTCTTGTT
GAAGGAACAGAGTGCTCTGTTTGCTTGAGTGAGTTTCAAGAAGATGAGAC
TCTAAGGCTTTTGCCAAAATGCAATCATGCTTTTCACATATCTTGTATTG
ACACCTGGCTTAGATCACACACCAATTGTCCATTGTGCCGTTCTCCTATT
GTCAAGATCAACCATGCAGCTAGAGCACCACCATCATCATCAACATGGGA
GTCGAATAATGAGGATTCAGGCACTAGAGAAAGTACCCAAGTGGGTATTT
TGACAGAAAATGGTGGTAGAAATGACATGGAGTCGGAAATTGGTGCCGTT
GAAAGGCGGAATATAACGAAAGAAATGATCAAGATTCTGATGACGAGATA
CAACAATAAGAAGATCAGTTTCCTTGGAATCCTTAACAGCCTCCAAGATG
AATCCTGCTCTTGGGAAATTTTGATCCTGGAAAAACTTACAAAAATTTCA
AAAAACCAGTTTGGGTAAAGAGAAAAAAATTTGAATGGTGGAAACTGGTT
CCCAAAAAAATTTGGAAAAAAATGGAAAGCTTGATTAAAACCCCTTTGTG
AAAAAGGGGCCCGGTGGTTACTTAAAAAAAAGGGTCGTTTATTCCCGGGG
GGGGGGCAAAATTTTCCTTTGTTTATAAAAAAAAAACAAGCCCCAAAAAA
CCCCAGGAGAAAAACCATTTTTTTTTTTTTTTTTTTCCCCAAAAAAATTA
AAACCCAC
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