DY305688

Overview
NameDY305688
Unique NameDY305688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1307
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6718 contig Csv1_Contig6718:1..1307. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY305688 vs. ExPASy Swiss-Prot
Match: CHX13_ARATH (K(+)/H(+) antiporter 13 OS=Arabidopsis thaliana GN=CHX13 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.494e-19
Identity = 48/131 (36.64%), Postives = 74/131 (56.49%), Query Frame = 3 
Query:  360 RHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCSVAVLVDRGFGCGAHLTVAEPAATVPKRVCIVFLGGPDDRRALDLGGRMAENSGVKVTFVRFVHQAS 752
            +H TA +  S+++ DI  +A +K+  +IV+PFHKQ   +G   +  V+   R +N  VL  APCSVA+ +DRG   G    +        + V ++F+GG DD  AL L  RMAE   + VT + F H+++
Sbjct:  559 QHFTAAAPYSSINNDICTLALDKKATLIVIPFHKQYAIDGT--VGQVNGPIRTINLNVLDAAPCSVAIFIDRGETEGRRSVLM---TNTWQNVAMLFIGGKDDAEALALCMRMAEKPDLNVTMIHFRHKSA 684

HSP 2 Score: 35.4242 bits (80), Expect = 7.494e-19
Identity = 19/79 (24.05%), Postives = 41/79 (51.90%), Query Frame = 2 
Query:    2 IYKPLRRLTPQNQQGLERQSPSAKNPKDEFKIQACVHGPENVPALINLTELIRTTEGSTLKLYVMRLVELTDRSSSILT 238
            +Y P +R   +++    R   + +    + ++   ++  ENVP+++NL E    T  + +  + + LVEL  R+ ++LT
Sbjct:  449 LYDPSKRYKSKSK----RTILNTRQHNLQLRLLLGLYNVENVPSMVNLLEATYPTRFNPISFFTLHLVELKGRAHALLT 523
The following BLAST results are available for this feature:
BLAST of DY305688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CHX13_ARATH7.494e-1936.64K(+)/H(+) antiporter 13 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM1DG04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305688 ID=DY305688; Name=DY305688; organism=Citrus sinensis; type=EST; length=1307bp
CATCTACAAACCCTTGCGTCGACTCACTCCTCAAAATCAACAAGGATTAG
AGCGACAATCGCCTTCTGCCAAGAACCCAAAGGATGAATTTAAAATCCAA
GCATGCGTACATGGTCCTGAAAATGTGCCTGCACTCATCAACCTCACGGA
ATTAATCAGGACTACCGAGGGATCGACACTCAAACTTTATGTCATGCGAC
TTGTTGAACTCACTGATCGCTCGTCTTCCATCCTTACGGTTCAAAAAAAC
TCGAAAGAATGGCCTTCCATTCGTTAATCGGTTCCGCCGAGCTGGCATGT
CACATGATCAAATTGTTGCCTCATTAGAAGCATACAACCAGCTGCGAAGA
GTCACTGTTCGTCATTCAACAGCAATCTCGGCGCTGTCAACCATGCATGA
GGATATCTTTCATGTCGCGGAGGAGAAGAGGGTGGCAATGATCGTCTTAC
CCTTCCATAAACAACGGAGAGGAGAGGGTGAAGAGGAGATAGATAGTGTT
AGCCACGGCTGGAGAGAGGTCAATCGGACGGTGCTACTGAATGCACCATG
CTCGGTGGCTGTGCTTGTGGACCGTGGATTCGGTTGTGGGGCTCATCTGA
CTGTGGCAGAACCAGCTGCTACCGTGCCGAAAAGGGTATGCATTGTGTTC
TTGGGGGGACCAGATGATCGCAGAGCTCTGGATTTAGGTGGAAGGATGGC
GGAAAATTCAGGTGTTAAAGTGACTTTCGTAAGGTTCGTCCACCAAGCTA
GTGAGGCGGCACCGGGCGGCATTGCTGAAAAGGCAACATCAAACATAAGT
ACAGAGAATGGCATTAACCCGGAAGAGACTGCGGTGGAACAACTTCAGAG
GAAATGGCATGGGGTCAGGGAAGTAGAAAAAATAGTGTATGGCAACTTGA
AATAGGAAATGCTAAAAATAAGGGGAAAACCGGAAATGGAACTTGTTAAA
ATTGGGAAAGGAAGGTTCCGTTGCCCCGAAGAAACCAAAACGTGCTAATA
TTTACCCCTAAAATTTGAGTGTGGAAACCTACCAAAGAAAGACCGGGAGC
ACCACAACCAGGAACTTTAGCTTCATTCTGTTCGAACACAATACACAAGC
GCAAACTAGAAAATAAAAAGATCTAAGCGTGTGAAAAATAGTATCTCGGG
AGGAAGCTGAAACTTATGGGCCAATCTCGTGAGAGGATTGTGTGGTAGCA
AATGGAAGAGTATTACTTTCTGGATATTATCACCACTGAGGGCTGGGACN
GTCTTGATCTGTACTAAAAAATAGAGCAGACGGACACTATATCTGGTGGT
GTTGTTG
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