DY305687

Overview
NameDY305687
Unique NameDY305687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3499 contig Csv1_Contig3499:423..1344. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY305687 vs. ExPASy Swiss-Prot
Match: TM9S3_MOUSE (Transmembrane 9 superfamily member 3 OS=Mus musculus GN=Tm9sf3 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.426e-27
Identity = 59/112 (52.68%), Postives = 68/112 (60.71%), Query Frame = 3 
Query:    3 YYVYGFMXXXXXXXXXXXXXXXXXXXYFLLNAENYHWQWTSFFSAASTAXXXXXXXXXXXXXKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSNLFVRRIYRNIKCD 338
            YYVYGFM                   YFLLNAE+Y WQWTSF SAASTA             KTKM G FQTSFYFGY  +F   LGI+CGA+GY+G++ FVR+IY N+K D
Sbjct:  476 YYVYGFMMLVLVILCIVTVCVTIVCTYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGYMAVFSTALGIMCGAIGYMGTSAFVRKIYTNVKID 587
[Close]
BLAST of DY305687 vs. ExPASy Swiss-Prot
Match: TM9S3_HUMAN (Transmembrane 9 superfamily member 3 OS=Homo sapiens GN=TM9SF3 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 3.426e-27
Identity = 59/112 (52.68%), Postives = 68/112 (60.71%), Query Frame = 3 
Query:    3 YYVYGFMXXXXXXXXXXXXXXXXXXXYFLLNAENYHWQWTSFFSAASTAXXXXXXXXXXXXXKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSNLFVRRIYRNIKCD 338
            YYVYGFM                   YFLLNAE+Y WQWTSF SAASTA             KTKM G FQTSFYFGY  +F   LGI+CGA+GY+G++ FVR+IY N+K D
Sbjct:  478 YYVYGFMMLVLVILCIVTVCVTIVCTYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGYMAVFSTALGIMCGAIGYMGTSAFVRKIYTNVKID 589
[Close]
BLAST of DY305687 vs. ExPASy Swiss-Prot
Match: PHG1B_DICDI (Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.183e-11
Identity = 37/112 (33.04%), Postives = 50/112 (44.64%), Query Frame = 3 
Query:    3 YYVYGFMXXXXXXXXXXXXXXXXXXXYFLLNAENYHWQWTSFFSAASTAXXXXXXXXXXXXXKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSNLFVRRIYRNIKCD 338
            Y +YG +                   YF L+ E++ W W SF +  ST               + M G  Q +FYF Y L+ C    IL G VG+  S +FV+RIYRN+K D
Sbjct:  476 YTLYGILCLVFLILINVTVCITVALTYFQLSMEDHKWWWNSFINGGSTVVFIYMYSIYYYYYISHMYGLLQATFYFTYMLIVCFFFFILLGTVGFYSSLIFVKRIYRNLKSD 587
[Close]
BLAST of DY305687 vs. ExPASy Swiss-Prot
Match: TM9S2_RAT (Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.496e-11
Identity = 35/112 (31.25%), Postives = 51/112 (45.54%), Query Frame = 3 
Query:    3 YYVYGFMXXXXXXXXXXXXXXXXXXXYFLLNAENYHWQWTSFFSAASTAXXXXXXXXXXXXXKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSNLFVRRIYRNIKCD 338
            YY++GF+                   YF L AE+YHWQW SF ++  TA             K +++G   T  YFGYT++  L   +  G +G+     FV +IY  +K D
Sbjct:  552 YYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLVYAIHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
[Close]
BLAST of DY305687 vs. ExPASy Swiss-Prot
Match: TM9S2_PONAB (Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.496e-11
Identity = 35/112 (31.25%), Postives = 51/112 (45.54%), Query Frame = 3 
Query:    3 YYVYGFMXXXXXXXXXXXXXXXXXXXYFLLNAENYHWQWTSFFSAASTAXXXXXXXXXXXXXKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSNLFVRRIYRNIKCD 338
            YY++GF+                   YF L AE+YHWQW SF ++  TA             K +++G   T  YFGYT++  L   +  G +G+     FV +IY  +K D
Sbjct:  552 YYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
[Close]
BLAST of DY305687 vs. ExPASy Swiss-Prot
Match: TM9S2_MOUSE (Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.496e-11
Identity = 35/112 (31.25%), Postives = 51/112 (45.54%), Query Frame = 3 
Query:    3 YYVYGFMXXXXXXXXXXXXXXXXXXXYFLLNAENYHWQWTSFFSAASTAXXXXXXXXXXXXXKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSNLFVRRIYRNIKCD 338
            YY++GF+                   YF L AE+YHWQW SF ++  TA             K +++G   T  YFGYT++  L   +  G +G+     FV +IY  +K D
Sbjct:  551 YYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAIHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 662
[Close]
BLAST of DY305687 vs. ExPASy Swiss-Prot
Match: TM9S2_HUMAN (Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.496e-11
Identity = 35/112 (31.25%), Postives = 51/112 (45.54%), Query Frame = 3 
Query:    3 YYVYGFMXXXXXXXXXXXXXXXXXXXYFLLNAENYHWQWTSFFSAASTAXXXXXXXXXXXXXKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSNLFVRRIYRNIKCD 338
            YY++GF+                   YF L AE+YHWQW SF ++  TA             K +++G   T  YFGYT++  L   +  G +G+     FV +IY  +K D
Sbjct:  552 YYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
The following BLAST results are available for this feature:
BLAST of DY305687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TM9S3_MOUSE3.426e-2752.68Transmembrane 9 superfamily member 3 OS=Mus muscul... [more]
TM9S3_HUMAN3.426e-2752.68Transmembrane 9 superfamily member 3 OS=Homo sapie... [more]
PHG1B_DICDI1.183e-1133.04Putative phagocytic receptor 1b OS=Dictyostelium d... [more]
TM9S2_RAT4.496e-1131.25Transmembrane 9 superfamily member 2 OS=Rattus nor... [more]
TM9S2_PONAB4.496e-1131.25Transmembrane 9 superfamily member 2 OS=Pongo abel... [more]
TM9S2_MOUSE4.496e-1131.25Transmembrane 9 superfamily member 2 OS=Mus muscul... [more]
TM9S2_HUMAN4.496e-1131.25Transmembrane 9 superfamily member 2 OS=Homo sapie... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM1DG03RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305687 ID=DY305687; Name=DY305687; organism=Citrus sinensis; type=EST; length=922bp
GCTACTATGTGTATGGGTTCATGCTGTTGGTTTTTGTGATTCTCATCATT
GTGACTGTTTGTGTCACAATTGTGGGAACATATTTCCTGCTAAATGCTGA
GAATTATCACTGGCAATGGACATCATTCTTCTCTGCTGCCTCAACGGCTG
TCTATGTGTATTTGTACTCAATATATTACTACTATGTGAAGACTAAGATG
TCAGGCTTCTTCCAGACCAGCTTCTATTTTGGCTACACTTTGATGTTTTG
TCTTGGTTTAGGAATCCTCTGTGGAGCTGTTGGTTACCTCGGCTCTAATT
TGTTTGTGAGGAGGATTTATAGAAACATCAAGTGTGACTAGAACGTTACC
AAGGAAAAACCGACCTGAGTGTGCTTACCTGAGAATTTTTGGCTGAGGCA
ATAAAATTTAGAGAGGAAGCCTTGGGTCAATATATGGGGGACCTTCCAGT
ATCTGCAGATGAAAATCACAGGGATAGAGGATGGGGATGTGTTCTTTCTC
GAGATTATTAGGAGCTTGAAATTTTTCTAATTTTTTCCCCAGATGGGTTT
GAAAACATAAACCCAAAGGTAAATCTCACACATTGGTCATTAGAAGAAGA
GAATCTTTAATCAAANTTTGAACGGTAATCGTCGTATTTATTATTTATAA
AATACGATATTGGTTTACCTCTAAGCTAGGTCACCTTCCAAAAAAAGAGC
ACGAAAGAGATGGGTTTCGGAATACCCAANAATCGAGAATAGTTGCAGTC
NCCATGTACAATATCAAACAGGAAAAGGAGAATTAAAAAGTGANATTAAA
TTGTGANATCAAAAAAAAAAAAAAGTANNGGAAGGGAGGAGGGGANTCNN
NATTTTTCCNATATNTTTGTANTTNNAATNTTAATGTCNGTNGTTTTNNN
AATNAGGGGTGGTATAAATGNN
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