DY305680
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY305680 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 2.516e-30 Identity = 76/206 (36.89%), Postives = 126/206 (61.17%), Query Frame = 1 Query: 157 STLQDTTVQTKPEQTQKQNIRR-KIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ-------HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF-GQK 744 S ++ ++ K E+ + +++ ++YV NLP+S + +++ +FA GTV +VEI+ + ++R FAFVTM S EEA+ A+ FD +V GR ++V F + + + SA R T HKLYV+NLSW + S LR+ F+ +S+KV+++ + GRS G+GF++F++ E +A+ +++ EL GRPLRL GQK Sbjct: 92 SAEEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPE-VPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQK 296
BLAST of DY305680 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 4.910e-26 Identity = 70/179 (39.11%), Postives = 103/179 (57.54%), Query Frame = 1 Query: 223 KIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR---------ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 729 KI+V NLP+S A + LF G V VE+I K G++R F FVTM+S EE +AA QF+ E+ GR +RV P P++ ++ R ++ +++YV NL+W V L FS V +KVV++ + GRS G+GFV++++ EE AI SLDG +L GR +R+ Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSG-----PPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 261
BLAST of DY305680 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 7.090e-25 Identity = 71/198 (35.86%), Postives = 107/198 (54.04%), Query Frame = 1 Query: 223 KIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA------------------KKFKKPRPQRSASAPAR-----ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 744 K++V NLP+S A + LF G V VE+I K G++R F FVTM++ EE +AA QF+ E+ GR IRV + R S+ AR ++ +++YV NLSW V L+E FS N V +KVV++ + GRS G+GFV++++ +E AI SL+G +L GR +R+ ++ Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEE 285
BLAST of DY305680 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 7.090e-25 Identity = 71/198 (35.86%), Postives = 107/198 (54.04%), Query Frame = 1 Query: 223 KIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA------------------KKFKKPRPQRSASAPAR-----ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 744 K++V NLP+S A + LF G V VE+I K G++R F FVTM++ EE +AA QF+ E+ GR IRV + R S+ AR ++ +++YV NLSW V L+E FS N V +KVV++ + GRS G+GFV++++ +E AI SL+G +L GR +R+ ++ Sbjct: 89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEE 286
BLAST of DY305680 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.579e-24 Identity = 70/185 (37.84%), Postives = 102/185 (55.14%), Query Frame = 1 Query: 223 KIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARE---------------TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 729 KI+V NL +S A + LF G V VE+I K G++R F FVTM+S EE +AA QF+ E+ GR +RV P P++ ++ RE + +++YV NL+W V L FS V +KVV++ + GRS G+GFV++++ EE AI SLDG +L GR +R+ Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSG-----PPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 267
BLAST of DY305680 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 6.002e-24 Identity = 83/261 (31.80%), Postives = 126/261 (48.28%), Query Frame = 1 Query: 19 FLTNYPFSFSCLFPKLPHCIKLLHSSNSTPSLI--YNFPTRNVCLQVCSTLQ-----DTTVQTKPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKK--------PRPQRSASAPA--------RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 729 F + P S S L P L L+S + + S+ +N P V T + D P + Q + K++V NLP++ A++ LF G V VE+I K G++R F FVTM+S E +AA QF+ E+ GR +RV K PR +S + +++YV NLSW V L FS V ++V+++ + GRS G+GFV++ + +E + AI SLDG +L GR +R+ Sbjct: 20 FGVSRPASVSLLSPSLSF---KLNSDSVSFSIAAKWNSPASRFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRV 277
BLAST of DY305680 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 7.838e-24 Identity = 64/186 (34.41%), Postives = 108/186 (58.06%), Query Frame = 1 Query: 193 EQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR--ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 741 E+ Q+ K++V NLP+ + LF G V E+I ++ ++R F FVTM++ EEA+ AV ++ +V+GR++ V A + + RP+R P R E +++YV N+ W + L + FS + VS++VV++ GRS G+GFV+ A++ E AI++LDG+ L GR +R+ + Sbjct: 127 EEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAAR-RGERPER----PPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307
BLAST of DY305680 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 2.281e-23 Identity = 62/186 (33.33%), Postives = 105/186 (56.45%), Query Frame = 1 Query: 193 EQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR-ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 744 E+ Q+ + K++V NLP+ + LF G V E+I ++ ++R F FVTM++ EEA AV + +++GR++ V A PR R AP + +++YV N+ W + L + FS + VS++VVF+ GRS G+GFV+ +++ E AI++LDG+ L GR +R+ ++ Sbjct: 88 EEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAA----PRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEE 269
BLAST of DY305680 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 3.890e-23 Identity = 63/176 (35.80%), Postives = 102/176 (57.95%), Query Frame = 1 Query: 223 KIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAP-ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 744 K++V NL + + + LF GTV E+I ++ ++R F FVTM+S +EA+ AV +F+ +++GR++ V A PR R AP E ++YV NL W V + L + FS + V ++VV++ GRS G+GFV+ + +E AIS+LDG+ L GR +R+ ++ Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAA----PRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEE 322
BLAST of DY305680 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 2.360e-20 Identity = 58/175 (33.14%), Postives = 100/175 (57.14%), Query Frame = 1 Query: 223 KIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 744 K++V NLP+ ++ +F G V E+I ++ ++R F FVTM++ EEA+ AV + ++ GR + V K + P+R+ E ++YV NL W V ++ L + FS + VS++VV + GRS G+GFV+ +++ E AI++LDG+ L GR +R+ ++ Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVN--KAAPRGSPERAPRGDF-EPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEE 227 The following BLAST results are available for this feature:
BLAST of DY305680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 92
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Sequences
The
following sequences are available for this feature:
EST sequence >DY305680 ID=DY305680; Name=DY305680; organism=Citrus sinensis; type=EST; length=1094bpback to top |