DY305665 | Citrus Genome Database

Overview


Name	DY305665
Unique Name	DY305665
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	1166

Libraries


Library Name	Type
SLH	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
DY305665_ssr456	microsatellite	DY305665_ssr456:456..467.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6713	contig	Csv1_Contig6713:1..1166.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

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BLAST of DY305665 vs. ExPASy Swiss-Prot
Match: CTR1_ARATH (Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 7.988e-22
Identity = 48/63 (76.19%), Postives = 55/63 (87.30%), Query Frame = 2

Query:  134 VVAAVGFKGKRLEIPRNVNPHVASIIEACWANEPWKRPSFSTIMELLRPLIKSPTPQPSPTDM 322
            VVAAVGFK KRLEIPRN+NP VA+IIE CW NEPWKRPSF+TIM+LLRPLIKS  P P+ +D+
Sbjct:  759 VVAAVGFKCKRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSAVPPPNRSDL 821

The following BLAST results are available for this feature:

BLAST of DY305665 vs. ExPASy Swiss-Prot

BLAST of DY305665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
CTR1_ARATH	7.988e-22	76.19	Serine/threonine-protein kinase CTR1 OS=Arabidopsi...	[more]

Properties


Property Name	Value
Genbank description	KN0AAM1DD06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DY305665 ID=DY305665; Name=DY305665; organism=Citrus sinensis; type=EST; length=1166bp
GATTCAATATGCTCTTTTTCAGTATTCCTGTTTAGCACTCCATAACATTT
GCGTAATCCATTTAATTTTGAGTTATATTTGGATGAATTAATTTTCTTCA
TGAGACTTAGATCAATGTATGCTACTTTTGTAGGTTGTAGCAGCTGTTGG
TTTCAAGGGCAAGAGGCTTGAGATTCCGCGCAATGTAAATCCCCATGTGG
CCTCCATAATTGAGGCTTGCTGGGCTAACGAGCCCTGGAAACGTCCATCC
TTCTCCACAATCATGGAATTATTAAGGCCTTTGATTAAATCTCCTACGCC
TCAGCCAAGTCCTACGGACATGCCATTACTTACTTGAGGGGAGAGAAACT
CTGAGAGGTCTTATTCATGCACATAAATACATCATTTTTCGTATTGAGGT
TTGATGTTTGGCAGGAGACAAACTGTTTAGGTAGTCTGAGGTGCTCCTTC
TACAATTCTTCTTCTTCTTTTTCACTTTTTCTTTCTCTCTTGTTGTCTAT
CCCTTGTTTCCCTTTGCTCTAATCTATAAATACAGAGTGATACCCCGAGT
CTGTATTCTCTTTGTTGACAGAATATTGTTGATTTTAATAGAAGTAGAAA
AAGCTTAGGATAGACAGCCTTGTGATATACTGTCACCCTTAAAATTCGTT
TCTGTTTTCATGCAACTACTAAACCATCATTATTTGTGTTAGACTAAGGG
GATGGGCGGGGTGTCAAATATATTCGAACAACCGGACAGTGGATTGTTGC
ATTTCCTTGGCCAGGGATTAAACATGCTCTTCCTACTTCTCGTCCTTGAA
ACTGAACCCCATTTCTTCTTTTGGCCCCAGGAGTGGTAAGGATTTCTTCC
TCCGTCAAAAATTTTGCCAAAGCTTTAAAATTCAAATTTACTAAATCCTA
ACCCCGGCCCCAAAGGTTTAATGTGCCAAAATTATGTGGTAAATGATGGT
TTCCCCCGCTGAGTGAAAATTACAAATTTTTTAGGAACGCTGGAAAAACA
AATATCCGATTAACACACCAAAAAAGAAATGGGATGGAAGGAAATAGTAA
AGAATAATCGATATCAGGAAGAGTTTGAGACATCGGTCCCCCGTGAATTC
TGTATAGTAAGATTTATGGACCAAGCAAATAAGAGCAAAGAGAAAAAACC
AGTTCTTTCCTCGTTA