DY305648

Overview
NameDY305648
Unique NameDY305648
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305648_ssr301 microsatellite DY305648_ssr301:301..310. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6710 contig Csv1_Contig6710:1..608. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY305648 vs. ExPASy Swiss-Prot
Match: PIN3A_ORYSJ (Probable auxin efflux carrier component 3a OS=Oryza sativa subsp. japonica GN=PIN3A PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.114e-30
Identity = 66/69 (95.65%), Postives = 69/69 (100.00%), Query Frame = 3
Query:    3 VMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYYIVLGL 209
            VMAAASIA+GLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITL+YYI+LGL
Sbjct:  550 VMAAASIAIGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLLYYILLGL 618          
BLAST of DY305648 vs. ExPASy Swiss-Prot
Match: PIN1C_ORYSJ (Probable auxin efflux carrier component 1c OS=Oryza sativa subsp. japonica GN=PIN1C PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.259e-29
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 3
Query:    3 VMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYYIVLGL 209
            VMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEY+VHP ILSTAVIFGMLIALPITLVYYI+LGL
Sbjct:  524 VMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYSVHPDILSTAVIFGMLIALPITLVYYILLGL 592          
BLAST of DY305648 vs. ExPASy Swiss-Prot
Match: PIN1_ORYSJ (Auxin efflux carrier component 1 OS=Oryza sativa subsp. japonica GN=PIN1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.869e-29
Identity = 65/69 (94.20%), Postives = 68/69 (98.55%), Query Frame = 3
Query:    3 VMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYYIVLGL 209
            VMAAAS AVGLRGTLLHVAIVQAALPQGIVPFVFAKEY+VHP+ILSTAVIFGMLIALPITLVYYI+LGL
Sbjct:  527 VMAAASFAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYSVHPSILSTAVIFGMLIALPITLVYYILLGL 595          
BLAST of DY305648 vs. ExPASy Swiss-Prot
Match: PIN1B_ORYSJ (Probable auxin efflux carrier component 1b OS=Oryza sativa subsp. japonica GN=PIN1B PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.869e-29
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 3
Query:    3 VMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYYIVLGL 209
            VMAAASIAVGLRG LLH+AIVQAALPQGIVPFVFAKEYNVHP ILSTAVIFGMLIALPITLVYYI+LGL
Sbjct:  486 VMAAASIAVGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPNILSTAVIFGMLIALPITLVYYILLGL 554          
BLAST of DY305648 vs. ExPASy Swiss-Prot
Match: PIN3_ARATH (Auxin efflux carrier component 3 OS=Arabidopsis thaliana GN=PIN3 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.886e-27
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = 3
Query:    3 VMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYYIVLGL 209
            VMA A+IA+GLRG LL VAIVQAALPQGIVPFVFAKEYNVHPAILST VIFGMLIALPITLVYYI+LGL
Sbjct:  572 VMAVAAIAIGLRGDLLRVAIVQAALPQGIVPFVFAKEYNVHPAILSTGVIFGMLIALPITLVYYILLGL 640          
BLAST of DY305648 vs. ExPASy Swiss-Prot
Match: PINI_ARATH (Auxin efflux carrier component 1 OS=Arabidopsis thaliana GN=PIN1 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.429e-27
Identity = 61/69 (88.41%), Postives = 64/69 (92.75%), Query Frame = 3
Query:    3 VMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYYIVLGL 209
            VM  AS AVGLRG LLHVAI+QAALPQGIVPFVFAKEYNVHP ILSTAVIFGMLIALPITL+YYI+LGL
Sbjct:  554 VMLVASYAVGLRGVLLHVAIIQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITLLYYILLGL 622          
BLAST of DY305648 vs. ExPASy Swiss-Prot
Match: PIN7_ARATH (Auxin efflux carrier component 7 OS=Arabidopsis thaliana GN=PIN7 PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 6.429e-27
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 3
Query:    3 VMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYYIVLGL 209
            VMA A++A+GLRG LL VAIVQAALPQGIVPFVFAKEYNVHPAILST VIFGMLIALPITLVYYI+LGL
Sbjct:  551 VMAVAAMAIGLRGDLLRVAIVQAALPQGIVPFVFAKEYNVHPAILSTGVIFGMLIALPITLVYYILLGL 619          
BLAST of DY305648 vs. ExPASy Swiss-Prot
Match: PIN2_ORYSJ (Probable auxin efflux carrier component 2 OS=Oryza sativa subsp. japonica GN=PIN2 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.432e-26
Identity = 58/69 (84.06%), Postives = 65/69 (94.20%), Query Frame = 3
Query:    3 VMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYYIVLGL 209
            V+AA SIA+GLRG LLHVAIVQAALPQGIVPFVFAKEYN HP ILSTAVIFGMLIALPIT++YY++LG+
Sbjct:  562 VIAATSIAIGLRGVLLHVAIVQAALPQGIVPFVFAKEYNCHPQILSTAVIFGMLIALPITILYYVLLGI 630          
BLAST of DY305648 vs. ExPASy Swiss-Prot
Match: PIN2_ARATH (Auxin efflux carrier component 2 OS=Arabidopsis thaliana GN=PIN2 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.871e-26
Identity = 56/69 (81.16%), Postives = 66/69 (95.65%), Query Frame = 3
Query:    3 VMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYYIVLGL 209
            V+AA SIA+G+RG LLH+AIVQAALPQGIVPFVFAKEYNVHP ILSTAVIFGML+ALP+T++YY++LGL
Sbjct:  579 VIAATSIAIGIRGDLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLVALPVTVLYYVLLGL 647          
BLAST of DY305648 vs. ExPASy Swiss-Prot
Match: PIN4_ARATH (Auxin efflux carrier component 4 OS=Arabidopsis thaliana GN=PIN4 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.108e-26
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 3
Query:    3 VMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYYIVLGL 209
            +MA A IA+GL G LL +AIVQAALPQGIVPFVFAKEYNVHP ILST VIFGMLIALPITLVYYI+LGL
Sbjct:  548 IMAVAGIAIGLHGDLLRIAIVQAALPQGIVPFVFAKEYNVHPTILSTGVIFGMLIALPITLVYYILLGL 616          
The following BLAST results are available for this feature:
BLAST of DY305648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PIN3A_ORYSJ8.114e-3095.65Probable auxin efflux carrier component 3a OS=Oryz... [more]
PIN1C_ORYSJ5.259e-2995.65Probable auxin efflux carrier component 1c OS=Oryz... [more]
PIN1_ORYSJ6.869e-2994.20Auxin efflux carrier component 1 OS=Oryza sativa s... [more]
PIN1B_ORYSJ6.869e-2994.20Probable auxin efflux carrier component 1b OS=Oryz... [more]
PIN3_ARATH2.886e-2789.86Auxin efflux carrier component 3 OS=Arabidopsis th... [more]
PINI_ARATH6.429e-2788.41Auxin efflux carrier component 1 OS=Arabidopsis th... [more]
PIN7_ARATH6.429e-2788.41Auxin efflux carrier component 7 OS=Arabidopsis th... [more]
PIN2_ORYSJ1.432e-2684.06Probable auxin efflux carrier component 2 OS=Oryza... [more]
PIN2_ARATH1.871e-2681.16Auxin efflux carrier component 2 OS=Arabidopsis th... [more]
PIN4_ARATH7.108e-2684.06Auxin efflux carrier component 4 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1DB04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305648 ID=DY305648; Name=DY305648; organism=Citrus sinensis; type=EST; length=608bp
GCGTCATGGCCGCCGCTTCCATTGCCGTCGGCCTCCGTGGTACCCTCCTC
CACGTCGCAATTGTACAGGCTGCACTTCCTCAAGGAATTGTCCCATTTGT
GTTTGCTAAAGAGTATAATGTTCATCCAGCAATTCTTAGCACTGCGGTTA
TCTTTGGAATGTTGATAGCGTTACCAATTACTCTAGTCTACTACATTGTT
CTCGGATTGTGAATTTAATTTTCCATAATTATAGCTAGAATACAAGGAAT
TTTCAGGGAATTTTCATGGCGTTTCACACTTTGGAGCATTTGACTGCTGC
ATATATATATGCACCGGAATAAATGAACAGTTTCCCAGAAAAAAAATGAT
TTAATTATGCTCCAAAATATTTGGAGCTCATAATTAGATTATTGGTTAAG
AGAAAGCCAGTATATGAGGATCGTGCCCCCATTAGAAGCCAAAGTCGCGC
CAATTTTCTAGAGTTTTGAAGAGGAGCGAAGCAAAAGCTCGCGTCTAGCA
TGAAGGAGACATTATAGAGGAAATCAAGGAAAGAAAATTTGGTGGGTTAG
TGAGAATCTAATATTTTCTCTTTGTTCCCGTCATATATGCATGTAAAGTT
CGATAATC
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