DY305647

Overview
NameDY305647
Unique NameDY305647
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length950
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13131 contig Csv1_Contig13131:171..1120. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY305647 vs. ExPASy Swiss-Prot
Match: ZN363_HUMAN (RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.478e-41
Identity = 55/119 (46.22%), Postives = 71/119 (59.66%), Query Frame = -3
Query:  388 CVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG 744
            C+E     +CP+C E +  +R    VLPCGH +H+ C +EM +   Y CP+C  S  DM++ W + D E+A TPMP  Y N  V ILCNDC   S VQFH+L  KC  C+SYNT    G
Sbjct:  136 CIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGG 253          

HSP 2 Score: 65.4698 bits (158), Expect = 3.478e-41
Identity = 27/59 (45.76%), Postives = 35/59 (59.32%), Query Frame = -2
Query:  749 CGVCMGEYFWGSAKLLNDDTSKKQYHCDGCGICRMGGSDNFFHCNKCRCCYSMLWKNSH 925
            C    GEY+     L + D  KKQYHC+ CGICR+G  ++FFHC KC  C +M  +  H
Sbjct:   78 CSTLFGEYYCDICHLFDKD--KKQYHCENCGICRIGPKEDFFHCLKCNLCLAMNLQGRH 134          
BLAST of DY305647 vs. ExPASy Swiss-Prot
Match: ZN363_MOUSE (RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.889e-40
Identity = 55/119 (46.22%), Postives = 70/119 (58.82%), Query Frame = -3
Query:  388 CVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG 744
            C+E     +CP+C E +  +R    VLPCGH +H+ C +EM +   Y CP+C  S  DM++ W + D E+A TPMP  Y N  V ILCNDC   S VQFH+L  KC  C SYNT    G
Sbjct:  136 CIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCMHSALDMTRYWRQLDTEVAQTPMPSEYQNVTVDILCNDCNGRSTVQFHILGMKCKLCDSYNTAQAGG 253          

HSP 2 Score: 63.1586 bits (152), Expect = 2.889e-40
Identity = 25/59 (42.37%), Postives = 34/59 (57.63%), Query Frame = -2
Query:  749 CGVCMGEYFWGSAKLLNDDTSKKQYHCDGCGICRMGGSDNFFHCNKCRCCYSMLWKNSH 925
            C    GEY+     L + D  K+QYHC+ CGICR+G  ++FFHC KC  C +   +  H
Sbjct:   78 CSTLFGEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKH 134          
BLAST of DY305647 vs. ExPASy Swiss-Prot
Match: YERG_SCHPO (Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe GN=SPAC2F3.16 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.516e-20
Identity = 43/114 (37.72%), Postives = 65/114 (57.02%), Query Frame = -3
Query:  403 CVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNT 744
            C+E +   +CP+C EY+F +R+ VI L C H +H+ C +E    + Y CP C K++ +++ ++   D EI   PMP  Y      I CNDC    + ++H L  KC +C SYNT
Sbjct:  262 CIERSTDCNCPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTN-YRCPTCYKTIINVNSLFRILDMEIERQPMPYPYNTWISTIRCNDCNSRCDTKYHFLGHKCNSCHSYNT 374          

HSP 2 Score: 70.0922 bits (170), Expect = 2.125e-11
Identity = 35/88 (39.77%), Postives = 43/88 (48.86%), Query Frame = -2
Query:  668 CGVCMGEYFWGSAKLLNDDTSKKQYHCDGCGICRMGG--SDNFFHCNKCRCCYSMLWKNSHPMCRRCNAS*LPCLL*VFIRDKTGCNC 925
            C  CMG Y+    KL +DD +K  YHCD CGICR+G    D++FHC  C  C  +   N+H    RC            I   T CNC
Sbjct:  200 CKNCMGRYYCNKCKLWDDDPNKSSYHCDDCGICRIGRGLGDDYFHCKTCGLCLPISVFNTH----RC------------IERSTDCNC 271          
The following BLAST results are available for this feature:
BLAST of DY305647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ZN363_HUMAN3.478e-4146.22RING finger and CHY zinc finger domain-containing ... [more]
ZN363_MOUSE2.889e-4046.22RING finger and CHY zinc finger domain-containing ... [more]
YERG_SCHPO9.516e-2037.72Uncharacterized RING finger protein C2F3.16 OS=Sch... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM1DB03RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305647 ID=DY305647; Name=DY305647; organism=Citrus sinensis; type=EST; length=950bp
GTTTTTTTTGAACTAAACAAGAAAAACATTACTTATTTGCAAAGTGAGTA
AGAAGTTCATCCCAGCACCAGTATGAGCTAGTTGCTATGACTATTTACAT
CAGTTGCCTTGAGGAAACATACAACAAAGAACAAATGAAATGAAAAACAA
GAAGACAGAAAACAACACCATGAGCAGATTCAAACACCACGAGCTAGACT
AGAAACACCACGAGGAAGACTAACTGCTCCCCACAGAGCAAGTTGTAGAT
GCAGCCACTACCCCATAATGAGTAACGACTGTGGCTGAGATGGTTGAAAA
GATTAATTAAGACCCGAACCCATCCACATCAAACAGAGAGTTCCCATCAC
CATCACCATCATTGCTAACAATACTGCCACTTGCTCAGCCCCTGGTCAAG
CGAGTGTTGTAGGACTTGCAGTTTGGGCACTTCTGAGCCAGCACATGGAA
CTGGACATTAGAGGTCTTACCACAGTCATTGCAAAGGATCCAAACCTTTT
TATTTAGGTAAGCTTCTGGCATTGGAGTAGCCGCTATCTCCCTGTCATAT
TTCTCCCATACTTTGGACATGTCACAGACTGACTTGGAGCAGATAGGACA
GGCATATTGATGATGTTCCCGCATCTCCTTCAAGCAATTTTTGTGAATGG
TATGCCCACACGGCAAGACAATTACATCCTGTCTTGTCTCGAATAAATAC
TCACAGCAGACAGGGCAGTCATGATGCATTGCACCTTCTACACATGGGGT
GGCTGTTCTTCCAAAGCATTGAGTAGCAGCATCTACACTTGTTGCAATGG
AAGAAATTATCACTTCCCCCCATCCTGCATATTCCACATCCATCACAATG
ATATTGCTTCTTGGATGTATCATCATTCAACAGCTTGGCACTCCCCCAGA
AATATTCACCCATGCATACCCCACATTAACACAAACTTGTGAAACTTTTG
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