DY305639

Overview
NameDY305639
Unique NameDY305639
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1296
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305639_ssr1270 microsatellite DY305639_ssr1270:1270..1279. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY305639 vs. ExPASy Swiss-Prot
Match: IM30_PEA (Membrane-associated 30 kDa protein, chloroplastic OS=Pisum sativum GN=IM30 PE=2 SV=1)

HSP 1 Score: 407.527 bits (1046), Expect = 8.690e-113
Identity = 229/313 (73.16%), Postives = 255/313 (81.47%), Query Frame = 1
Query:   31 MAAKSQIVTGF-TMPMTPAPXXXXXXXXXXLCMVKKPLTTSFFNGG-VGALKVTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSPFEKMEEKVLTMESQANSPYQLTTDDLEGKFALLETSSVDKDLCKP*KELSGSSKKGELPLGRAAATAKT 963
            M  K QI +G  + P+ P+             ++KKPL T+ F    V  LK   +RIA   R      GGGA+  RMNLFDR ARVVKSYANA++S+FEDPEKILEQAVLEMNDDL KMRQATAQVLASQKRLENK KAA+QASE+WYRKAQLALQKGEEDLAREALKRRKS+ADNA++LKAQLDQQK+VV+NLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALS FEKMEEKV+TMESQA +  QLTTDDLEGKFA+LETSSVD DL    KEL+GSSKKGELP GR++ T+ T
Sbjct:    1 MTTKFQIFSGLPSAPLQPSSS-----------LLKKPLATTLFGTRPVDTLKFRVMRIAKPVR------GGGAIGVRMNLFDRFARVVKSYANALVSTFEDPEKILEQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAQQASEEWYRKAQLALQKGEEDLAREALKRRKSFADNASSLKAQLDQQKSVVDNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVMTMESQAEALGQLTTDDLEGKFAMLETSSVDDDLANLKKELAGSSKKGELPPGRSSTTSTT 296          
BLAST of DY305639 vs. ExPASy Swiss-Prot
Match: IM30_ARATH (Probable membrane-associated 30 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At1g65260 PE=1 SV=1)

HSP 1 Score: 375.555 bits (963), Expect = 1.239e-103
Identity = 206/312 (66.03%), Postives = 241/312 (77.24%), Query Frame = 1
Query:   31 MAAKSQIVTGFTMPMTPAPXXXXXXXXXXLCMVK-KPLTTSFFNGGVGALKVTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSPFEKMEEKVLTMESQANSPYQLTTDDLEGKFALLETSSVDKDLCKP*KELSGSSKKGELPLGRAAATAKT 963
            MA K+  VTG   P+ P             C ++  PL TSFF    GAL+V  LR+A  +R  C   G GA    MNLF+R +RVVKSYANA++SSFEDPEKILEQ V+EMN DL KMRQATAQVLASQK+L+NK KAA+Q+S+DWY++AQLAL KG+EDLAREALKRRKS+ADNA ALK QLDQQK VV+NLVSNTRLLESKIQEA++KKDTL ARA++AKTATKV EM+G VNTS ALS FEKMEEKV+ MES+A++  Q+ TD+LEGKF +LETSSVD DL    KELSGSSKKGELP GR+   A T
Sbjct:    1 MALKASPVTGLFPPLRPTASSSPSTSSNRPCSLRILPLRTSFFGNSSGALRVNVLRLACDNRLRC--NGHGAT---MNLFERFSRVVKSYANALISSFEDPEKILEQTVIEMNSDLTKMRQATAQVLASQKQLQNKYKAAQQSSDDWYKRAQLALAKGDEDLAREALKRRKSFADNATALKTQLDQQKGVVDNLVSNTRLLESKIQEAKAKKDTLLARARTAKTATKVQEMIGTVNTSGALSAFEKMEEKVMAMESEADALTQIGTDELEGKFQMLETSSVDDDLADLKKELSGSSKKGELPPGRSTVAAST 307          

HSP 2 Score: 23.8682 bits (50), Expect = 1.239e-103
Identity = 10/21 (47.62%), Postives = 16/21 (76.19%), Query Frame = 3
Query:  960 NTCFSFQNPEIEKELNKLGQK 1022
            +T + F++ EIE ELN+L +K
Sbjct:  306 STRYPFKDSEIENELNELRRK 326          
BLAST of DY305639 vs. ExPASy Swiss-Prot
Match: IM30_ORYSJ (Probable membrane-associated 30 kDa protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0895100 PE=1 SV=1)

HSP 1 Score: 376.326 bits (965), Expect = 2.145e-103
Identity = 207/281 (73.67%), Postives = 231/281 (82.21%), Query Frame = 1
Query:  139 LTTSFFNGGVGALKVTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSPFEKMEEKVLTMESQANSPYQLTTDDLEGKFALLETSSVDKDLCKP*KELSGSSKKGELPLGRAAATAKTPAFHFK 981
            L TSF NG V +L++ ++R +  +R  C          R NL DR +RVVKSYANA+LSSFEDPEKIL+QAVLEMNDDL KMRQATAQVLASQKRLENK KAAEQAS+DWYR+AQLALQKG+EDLAREALKRRKSYADNA++LKAQLDQQK VV NLVSNTR+LESKI EA+ KKDTLKARAQSAKT+TKVSEMLGNVNTS ALS FEKMEEKV+ MESQA +  QL TDDLEGKFALLETSSVD DL +  KE+SGSS KGELP GR A +    A  F+
Sbjct:   27 LRTSFLNGSV-SLRLIQVRQSNVNRFKCN-------GIRSNLLDRFSRVVKSYANAVLSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQASDDWYRRAQLALQKGDEDLAREALKRRKSYADNASSLKAQLDQQKGVVENLVSNTRVLESKIAEAKQKKDTLKARAQSAKTSTKVSEMLGNVNTSGALSAFEKMEEKVMAMESQAEALGQLATDDLEGKFALLETSSVDDDLAQMKKEISGSSSKGELPPGRTAVSNSGAARPFR 299          
BLAST of DY305639 vs. ExPASy Swiss-Prot
Match: Y617_SYNY3 (Uncharacterized protein sll0617 OS=Synechocystis sp. (strain PCC 6803) GN=sll0617 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 7.494e-48
Identity = 111/239 (46.44%), Postives = 156/239 (65.27%), Query Frame = 1
Query:  256 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSPFEKMEEKVLTMESQANSPYQLTTDDLEGKFALLETSS-VDKDLCKP*KELSGSSKKGELPLGRAAATAKTPA 969
            M LFDRL RVV++  N ++S  EDPEK+LEQAV++M +DLV++RQA A+ +A +KR E +     Q ++ W  +A+LAL  GEE+LAREAL R+KS  D A A + QL QQ+ +  NL  N   LE+KI EA++KK+ L+ARA++AK   ++ + LG + TSSA S FE+ME KVL ME+ + +  +L    +E +FA LE SS V+ +L      L  S   G LP G +AAT +  A
Sbjct:    1 MGLFDRLGRVVRANLNDLVSKAEDPEKVLEQAVIDMQEDLVQLRQAVARTIAEEKRTEQRLNQDTQEAKKWEDRAKLALTNGEENLAREALARKKSLTDTAAAYQTQLAQQRTMSENLRRNLAALEAKISEAKTKKNMLQARAKAAKANAELQQTLGGLGTSSATSAFERMENKVLDMEATSQAAGELAGFGIENQFAQLEASSGVEDELA----ALKASMAGGALP-GTSAATPQLEA 234          
BLAST of DY305639 vs. ExPASy Swiss-Prot
Match: PSPA_DEIRA (Phage shock protein A homolog OS=Deinococcus radiodurans GN=DR_1473 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 4.727e-26
Identity = 70/209 (33.49%), Postives = 116/209 (55.50%), Query Frame = 1
Query:  256 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSPFEKMEEKVLTMESQANSPYQLTTDDLEGKFALLETSSVDKDL 882
            M++FDRL+R++++  N ++S  EDP KI++QA+ +M       R   A  +A   +LE +     + + ++ +KA+ AL+ G EDLAREAL+R +++ D A     Q   Q++ V+ L +  R LE+KI E  SKK  L AR ++A+    +  + G      A+  F +ME+KV  ME +  +  +L  D  +   A L+    DKD+
Sbjct:    1 MSIFDRLSRLLRANVNDMISKAEDPAKIIDQALRDMRSAYADARNEVAGAMAQAAKLEREAGTNSKLAAEYEKKAEEALRGGSEDLAREALRRAQNHKDLAKGFDEQRTVQQSTVDQLKTQLRALEAKIDEMESKKTLLAARQKTAQAGETLDRVSGFSKAGGAMDAFNEMEQKVAGMEDRNKAMGELRND--QDFDAQLKDLGRDKDV 207          
BLAST of DY305639 vs. ExPASy Swiss-Prot
Match: PSPA_SHIFL (Phage shock protein A OS=Shigella flexneri GN=pspA PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 9.856e-24
Identity = 63/201 (31.34%), Postives = 108/201 (53.73%), Query Frame = 1
Query:  256 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSPFEKMEEKVLTMESQANSPYQLTTDDLEGKFALLE 858
            M +F R A +V +  NA+L   EDP+K++   + EM D LV++R  +A+ LA +K+L  + + A     +W  KA+LAL K  EDLAR AL  ++   D   +L+ ++    + +  +      LE+K+ E R+++  L  R Q+A ++  V   L +     A++ FE  E ++  ME++A S        L+ +FA L+
Sbjct:    1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKKEIGELENKLSETRARQQALMLRHQAANSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAESHSFGKQKSLDDQFAELK 201          
BLAST of DY305639 vs. ExPASy Swiss-Prot
Match: PSPA_ECOLI (Phage shock protein A OS=Escherichia coli (strain K12) GN=pspA PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 9.856e-24
Identity = 63/201 (31.34%), Postives = 108/201 (53.73%), Query Frame = 1
Query:  256 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSPFEKMEEKVLTMESQANSPYQLTTDDLEGKFALLE 858
            M +F R A +V +  NA+L   EDP+K++   + EM D LV++R  +A+ LA +K+L  + + A     +W  KA+LAL K  EDLAR AL  ++   D   +L+ ++    + +  +      LE+K+ E R+++  L  R Q+A ++  V   L +     A++ FE  E ++  ME++A S        L+ +FA L+
Sbjct:    1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKKEIGELENKLSETRARQQALMLRHQAANSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAESHSFGKQKSLDDQFAELK 201          
BLAST of DY305639 vs. ExPASy Swiss-Prot
Match: PSPA_ECO57 (Phage shock protein A OS=Escherichia coli O157:H7 GN=pspA PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 9.856e-24
Identity = 63/201 (31.34%), Postives = 108/201 (53.73%), Query Frame = 1
Query:  256 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSPFEKMEEKVLTMESQANSPYQLTTDDLEGKFALLE 858
            M +F R A +V +  NA+L   EDP+K++   + EM D LV++R  +A+ LA +K+L  + + A     +W  KA+LAL K  EDLAR AL  ++   D   +L+ ++    + +  +      LE+K+ E R+++  L  R Q+A ++  V   L +     A++ FE  E ++  ME++A S        L+ +FA L+
Sbjct:    1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKKEIGELENKLSETRARQQALMLRHQAANSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAESHSFGKQKSLDDQFAELK 201          
BLAST of DY305639 vs. ExPASy Swiss-Prot
Match: PSPA_BACSU (Phage shock protein A homolog OS=Bacillus subtilis GN=ydjF PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 1.379e-17
Identity = 64/216 (29.63%), Postives = 111/216 (51.39%), Query Frame = 1
Query:  256 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNV-NTSSALSPFEKMEEKVLTMESQANSPYQLTT------DDLEGKFALLETSSVDKDL 882
            M++  R   ++ +  NA+L   E+PEK+++Q +  MN DL K++  TA V+A ++R + +    +   E     A  ALQ G E  AR+ L+R+ S     + L+A           +      L S I E  ++K+ +KA+   AKT  +++++  +V +TS ++S F +ME+KV     QAN+  +L +       DL  K+    +S VD +L
Sbjct:    1 MSIIGRFKDIMSANINALLDKAENPEKMVDQYLRNMNSDLAKVKAETAAVMAEEQRAKREYHECQADMEKMESYAMKALQAGNESDARKFLERKTSLESKLSELQAANQIAATNAAQMRKMHDKLVSDIGELEARKNMIKAKWAVAKTQERMNKLGASVSSTSQSMSAFGRMEDKVNKALDQANAMAELNSAPQDDMADLSAKYDTGGSSQVDDEL 216          
BLAST of DY305639 vs. ExPASy Swiss-Prot
Match: LIAH_BACSU (Protein liaH OS=Bacillus subtilis GN=liaH PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.792e-16
Identity = 57/199 (28.64%), Postives = 98/199 (49.25%), Query Frame = 1
Query:  310 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSPFEKMEEKVLTMESQAN------SPYQLT----TDDLEGKFALLETSSVDK 876
            L   E+P+ +L Q V +M  D+ K +Q   +      + + K + A + +     +AQLA   GEE+LA++AL   K     A   KA  +Q  + + +L      LE+K+Q+ + KK  L ARA +AK    ++     +++ SA   F ++E ++  ME +AN      +  +LT     DD+E +   + T S+ K
Sbjct:   18 LDKMENPKVMLNQYVRDMESDIAKAKQTIVKQHTIAYQFKKKYEEAAEVAGKRKNQAQLAFDAGEEELAKKALTEMKYLEGKAAEHKASYEQANSQLADLKEQLAALETKLQDVKDKKQALIARANAAKAKEHMNTTFDKIDSESAYREFLRIENRIEEMEIRANYSKSAEAGTELTRKEFADDVEAEIEKMRTLSLQK 216          
The following BLAST results are available for this feature:
BLAST of DY305639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
IM30_PEA8.690e-11373.16Membrane-associated 30 kDa protein, chloroplastic ... [more]
IM30_ARATH1.239e-10366.03Probable membrane-associated 30 kDa protein, chlor... [more]
IM30_ORYSJ2.145e-10373.67Probable membrane-associated 30 kDa protein, chlor... [more]
Y617_SYNY37.494e-4846.44Uncharacterized protein sll0617 OS=Synechocystis s... [more]
PSPA_DEIRA4.727e-2633.49Phage shock protein A homolog OS=Deinococcus radio... [more]
PSPA_SHIFL9.856e-2431.34Phage shock protein A OS=Shigella flexneri GN=pspA... [more]
PSPA_ECOLI9.856e-2431.34Phage shock protein A OS=Escherichia coli (strain ... [more]
PSPA_ECO579.856e-2431.34Phage shock protein A OS=Escherichia coli O157:H7 ... [more]
PSPA_BACSU1.379e-1729.63Phage shock protein A homolog OS=Bacillus subtilis... [more]
LIAH_BACSU5.792e-1628.64Protein liaH OS=Bacillus subtilis GN=liaH PE=2 SV=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM1DA02RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305639 ID=DY305639; Name=DY305639; organism=Citrus sinensis; type=EST; length=1296bp
CAATAATTGAACTTGTGGGCATCCCGCAGAATGGCCGCAAAGTCACAGAT
AGTTACGGGATTCACCATGCCCATGACACCAGCGCCGTCCTCTTCTTCCT
CGAGCTCTAGCAGCAGTCTCTGCATGGTCAAGAAGCCCCTCACGACGTCG
TTTTTCAATGGTGGAGTGGGAGCTCTAAAAGTTACAAGGTTAAGGATTGC
TCCTTCCAGCCGATCCCATTGTTATAGACAAGGTGGAGGAGCACTTAATA
CACGAATGAACCTATTTGATAGGTTAGCAAGAGTTGTGAAGTCCTATGCA
AATGCAATTCTGAGTTCCTTTGAAGATCCAGAGAAGATTTTAGAGCAAGC
AGTACTTGAAATGAATGATGACTTGGTAAAGATGCGCCAGGCCACGGCAC
AAGTGTTGGCATCTCAGAAGCGGTTGGAAAATAAGTGCAAAGCTGCAGAG
CAAGCTTCTGAAGACTGGTATCGCAAAGCACAGCTCGCTCTTCAAAAAGG
GGAAGAAGATCTGGCACGTGAGGCTCTCAAGAGACGCAAATCTTATGCAG
ATAATGCTAATGCTTTGAAAGCTCAACTTGATCAACAAAAGAATGTTGTT
AATAACCTTGTTTCTAATACTCGGCTTTTGGAGAGCAAGATACAGGAGGC
AAGATCAAAGAAAGATACTCTGAAAGCAAGGGCTCAGTCTGCAAAGACTG
CAACCAAAGTGAGCGAGATGTTGGGGAATGTCAACACTAGCAGTGCTCTT
TCACCTTTTGAAAAAATGGAAGAGAAAGTGTTGACAATGGAGTCCCAAGC
AAATTCTCCTTACCAGTTAACTACCGATGATCTTGAAGGGAAGTTTGCAC
TACTTGAGACCTCATCCGTTGACAAAGATCTTTGCAAACCTTAAAAGGAA
CTATCTGGCAGCTCAAAAAAAGGAGAACTTCCACTTGGAAGGGCTGCTGC
TACCGCCAAAACACCTGCTTTTCATTTCAAAATCCGGAAATTGAAAAGGA
ATTGAACAAATTGGGGCAAAAACAAAAAAATTCCGAAATTTCCCTTAACC
TTTTGAAATAGGGTTAAAAATTCCAAATTTAAGCCTCAAATTTTAGAAAG
ATTTTGTTTTTTCCCTCCCTATTTAACCTTTGTAGACATACAAAGCCCAA
ACGGAAAATAAATTTTATATTTTTGTCGGGGGGCCCACCCCCCAAAAAAT
TTTTGGAATTTGTTTTTTCCCTCTGGTTTTTTTTTCTTTGAGGTATCAAT
TATCTTTTGTTTCTCCCCCCTCTCTCTCTTCCTTTCTACCTTTGTT
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