DY305616

Overview
NameDY305616
Unique NameDY305616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1150
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6700 contig Csv1_Contig6700:1..1151. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY305616 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 6.197e-27
Identity = 65/175 (37.14%), Postives = 102/175 (58.29%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 526
            L++++++Y+ Y  ++T  +D +                  C  LL +V  F K++E  LDALCD ++P  +TE ++++REGDP+DEM+F+++GKL T T    ++G  +S++             L  GDF GEEL+ WAL    S ++P S RT++AL  V+AF L ADDLK V
Sbjct:  437 LRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNSEY-------------LGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADDLKFV 598          
BLAST of DY305616 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 3.076e-26
Identity = 62/175 (35.43%), Postives = 103/175 (58.86%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 526
            L+++V++Y  Y   +T  +D +                  C NL+++V  F  ++E  LDA+C+ +KP+ FTE T+++REGDP++EM+F+++G+L + T    +SG  +               LL++GDF GEEL+ WAL  +   ++P S RT++ALT V+AF L A++LK V
Sbjct:  453 LRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGRLESVTTDGGRSGFFN-------------RGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFV 614          
BLAST of DY305616 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 5.246e-26
Identity = 61/175 (34.86%), Postives = 103/175 (58.86%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 526
            L+++V++Y  Y   +T  +D +                  C NL+++V  F  ++E  LDA+C+ +KP+ +TE T+++REGDP++EM+F+++G+L + T    +SG  +               LL++GDF GEEL+ WAL  +   ++P S RT++ALT V+AF L A++LK V
Sbjct:  459 LRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRLESVTTDGGRSGFFN-------------RGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFV 620          
BLAST of DY305616 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 8.949e-26
Identity = 62/175 (35.43%), Postives = 102/175 (58.29%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 526
            L+++V++Y  Y   +T  +D +                  C  L+++V  F  ++E  LDA+C+ +KP  FTE ++L+REGDP++EM+F+++G+L + T      G  S  + R          LL++GDF G+EL+ WAL  +   ++P S RT++ALT V+AF L+AD+LK V
Sbjct:  465 LRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVT----TDGGRSGFYNR---------SLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFV 626          
BLAST of DY305616 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.994e-25
Identity = 64/175 (36.57%), Postives = 103/175 (58.86%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 526
            L++++++Y+ Y  ++T  ++ +                  C +LLKKV  F  ++E  LDA+CD +KP  +TE+++ IREGDP++EM+FV++GKL + T    ++G  ++ +             L+  DF GE+L+ WAL  + S   P S RT+QALT V+AF L ADDLK+V
Sbjct:  425 LRKRIRRYEQYKWQETRGVEEENLLRNLPKDLRRDIKRHFCLDLLKKVPLFEIMDEQLLDAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKLMSATTNGGRTGFFNAVY-------------LKPSDFCGEDLLTWALDPQSSSHFPISTRTVQALTEVEAFALAADDLKLV 586          
BLAST of DY305616 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 3.401e-25
Identity = 61/175 (34.86%), Postives = 101/175 (57.71%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 526
            L+++V++Y  Y   +T  +D +                  C  L+++V  F  ++E  LDA+C+ +KP  +TE ++L+REGDP++EM+F+++G+L + T    +SG  +               LL++GDF GEEL+ WAL  +   ++P S RT +ALT V+AF L+AD+LK V
Sbjct:  464 LRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLYTESSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFFN-------------RSLLKEGDFCGEELLTWALDPKSGSNLPSSTRTAKALTEVEAFALIADELKFV 625          
BLAST of DY305616 vs. ExPASy Swiss-Prot
Match: CNGC5_ARATH (Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 4.441e-25
Identity = 60/175 (34.29%), Postives = 101/175 (57.71%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 526
            L+++V++Y  Y   +T  +D +                  C  L+++V  F+ +++  LDA+C  +KP  FTE T+L+REGDP+DEM+F+++G+L + T    +SG  +               LL++G+F GEEL+ WAL  +   ++P S RT++ALT V+AF L +++LK V
Sbjct:  449 LRERVRRYDQYKWLETRGVDEEYLVQNLPKDLRRDIKRHLCLALVRRVPLFKSMDDKLLDAICMRLKPCLFTESTYLVREGDPVDEMLFIIRGRLESVTTDGGRSGFFN-------------RSLLKEGEFCGEELLTWALDPKSGVNLPSSTRTVKALTEVEAFALTSEELKFV 610          
BLAST of DY305616 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 1.429e-23
Identity = 62/175 (35.43%), Postives = 102/175 (58.29%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 526
            L++++++Y+ Y  ++T  ++ +                  C +LLKKV  F  ++E  LDA+CD ++P  +TE++++IREGDP+ EM+FV++G+L + T    +SG  ++ +             L+  DF GE+L+ WAL  + S   P S RT+QALT V+AF L A+DLK V
Sbjct:  424 LRKRIRRYEQYRWQETRGVEEETLLRNLPKDLRRDIKRHLCLDLLKKVPLFEIMDEQLLDAVCDRLRPVLYTENSYVIREGDPVGEMLFVMRGRLVSATTNGGRSGFFNAVN-------------LKASDFCGEDLLPWALDPQSSSHFPISTRTVQALTEVEAFALTAEDLKSV 585          
BLAST of DY305616 vs. ExPASy Swiss-Prot
Match: CNG15_ARATH (Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 4.157e-23
Identity = 62/175 (35.43%), Postives = 97/175 (55.43%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 526
            L+Q V+KY  Y    T  +D +                  C++L+++V  F +++E  LDA+C+ +KP   TE T L+REGDP++EM+F+++G L +YT    ++G  +S              L+  GDF GEEL+ WAL  R    +P S RT++A+  V+AF L A+DL+ V
Sbjct:  422 LRQAVRKYDQYKWLATRGVDEEALLISLPLDLRRDIKRHLCFDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNS-------------CLIGPGDFCGEELLTWALDPRPVVILPSSTRTVKAICEVEAFALKAEDLQFV 583          
BLAST of DY305616 vs. ExPASy Swiss-Prot
Match: CNG17_ARATH (Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 4.596e-22
Identity = 58/177 (32.77%), Postives = 99/177 (55.93%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFN 532
            L+ +V++Y+ Y    T  +D +                  C +L+++V  F ++++  LDA+C+ +  +  TE T+L+REGD I EM+F+++G+L + T    ++G  +S              +L+ GDF GEEL+ WAL  + + ++P S RT++AL  V+AF L A+DLK V N
Sbjct:  432 LRNRVRRYEQYKWLATRGVDEEVLLQSLPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLCTEGTYLVREGDLISEMLFIIRGRLESSTTNGGRTGFFNSI-------------ILRPGDFCGEELLSWALLPKSTLNLPSSTRTVRALVEVEAFALRAEDLKFVAN 595          
The following BLAST results are available for this feature:
BLAST of DY305616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
CNGC1_ARATH6.197e-2737.14Cyclic nucleotide-gated ion channel 1 OS=Arabidops... [more]
CNGC7_ARATH3.076e-2635.43Putative cyclic nucleotide-gated ion channel 7 OS=... [more]
CNGC8_ARATH5.246e-2634.86Putative cyclic nucleotide-gated ion channel 8 OS=... [more]
CNGC6_ARATH8.949e-2635.43Probable cyclic nucleotide-gated ion channel 6 OS=... [more]
CNG13_ARATH1.994e-2536.57Putative cyclic nucleotide-gated ion channel 13 OS... [more]
CNGC9_ARATH3.401e-2534.86Putative cyclic nucleotide-gated ion channel 9 OS=... [more]
CNGC5_ARATH4.441e-2534.29Probable cyclic nucleotide-gated ion channel 5 OS=... [more]
CNG10_ARATH1.429e-2335.43Probable cyclic nucleotide-gated ion channel 10 OS... [more]
CNG15_ARATH4.157e-2335.43Putative cyclic nucleotide-gated ion channel 15 OS... [more]
CNG17_ARATH4.596e-2232.77Probable cyclic nucleotide-gated ion channel 17 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1CF06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305616 ID=DY305616; Name=DY305616; organism=Citrus sinensis; type=EST; length=1150bp
TCTCCAGCAAAAGGTGAAGAAATATAAGTCATACATACGGCGAAAAACTG
ATTACATTGATGTACAAAATCTACTCAATAATCTTCCCAATGAACTCAGA
AGAGAACTAAAGCGCGAACTTTGCTGGAATCTGCTAAAGAAAGTACAAGG
GTTCAGGAAGCTAAATGAAGTAACATTGGATGCTCTATGCGATTGCGTAA
AACCAACTTTCTTCACCGAGCACACTCACTTGATTCGTGAAGGAGACCCA
ATTGACGAGATGATCTTTGTAGTGCAAGGCAAACTGCGCACCTACACCTT
TAAGGATATACAAAGTGGCTCAACAAGCTCTGATCATAAAAGATATGATG
GCAAAAACACAAGGAAAGAAGATCTTCTGCAAGATGGCGACTTCTATGGA
GAAGAACTTATTGACTGGGCTTTGAGAGACCGCTTCTCATTTGACATCCC
TAAGTCAAACAGAACCATTCAAGCACTTACAAATGTTGATGCCTTTATGC
TTATGGCTGATGACTTGAAAATTGTATTCAATGACATGATGAATCAGTTA
GGTCTCTACGACTAAGGTCTCTATGACTAACAAGAACTCGTGGAACTCTA
CCCAGGAAATTGAGTGGGACTTGCAGCTGAAGTTTATCCACTCTTCAGCA
ACTAAATCTTTTAATGAAATAGTACCTTTTAAGTATCAAAACGTGAAGTT
TTCCTACTTTTCTGTAGGATATCCAGTTTCCCAAGGCCCGCATATTATCA
TTGTAAGGGCCACATATAATCAGTGTAAGTGGACTTGATTAACCCCCTCC
ATGATGAACAAAAAAATTGGTTTGGTTCTGTTGGCTCTAAAAAAAAAAAA
AAAAAATCCTCAGGGGGGGGGCCGGCTCCCCCATTCCCCCCTCTCTTAGG
CCCTAATAAAATTTCATTGGCCGGCTCTTTTTTAAACCTCGTGGCCTGGG
AAAAAACCCCTCGGTTTACCCCAACCTAATTTCCTTGCGGGCTCCAACTC
CCCCTTTTCCCCCCCCTGCGCCTTTAAATTAAGAAAAAAACCCGCCCCCC
CCAAACTCACCCCTCCCCCCCTCCATATTTGGGCCCCCCCCGTGCAGGAG
GGGGGAAGAAGGGGAAAAAAATTATTATAATACCGCCCTTTTATTTTATT
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