EY702582

Overview
NameEY702582
Unique NameEY702582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length967
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702582_ssr696 microsatellite EY702582_ssr696:696..705. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY702582 vs. ExPASy Swiss-Prot
Match: PP178_ARATH (Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.616e-22
Identity = 66/138 (47.83%), Postives = 80/138 (57.97%), Query Frame = 1 
Query:    4 RVRESSGIRKDAVTYNALLGGYGKQGKYHELTTMFEHMKAHWGWGIY*LTRP*LMCTQKAVCIRTQCKFFQSLSRPRLKADVVLYSALIDALRNTGLVESAVSLLDQMTKEGIRRGGVTSTSLIAAFRPAATTECTVD 417
            R   S GI+KD VTYNALLGGYGKQGKY E+  +F  MK              +    K    +   + F+      L+ADVVLYSALIDAL   GLV SAVSL+D+MTKEGI    VT  S+I AF  +AT + + D
Sbjct:  468 REMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSAD 605
The following BLAST results are available for this feature:
BLAST of EY702582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PP178_ARATH1.616e-2247.83Pentatricopeptide repeat-containing protein At2g31... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-009-G02-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702582 ID=EY702582; Name=EY702582; organism=Citrus sinensis; type=EST; length=967bp
CCACGCGTCCGGGAGAGTTCTGGGATTAGGAAGGATGCTGTGACTTATAA
TGCACTTTTGGGCGGATATGGGAAGCAAGGGAAGTACCATGAACTTACAA
CAATGTTTGAACACATGAAAGCACATTGGGGATGGGGAATCTATTGACTT
ACTCGACCTTGATTGATGTGTACTCAAAAGGCGGTTTGCATCAGGACGCA
ATGCAAATTTTTCCAGAGTTTAAGCAGGCCACGATTGAAGGCTGATGTGG
TGCTTTATAGTGCCCTTATAGATGCCTTGCGTAACACTGGTCTGGTGGAG
TCAGCTGTATCTTTACTGGACCAGATGACAAAGGAAGGAATTCGGCGTGG
GGGTGTCACTTCCACTTCCCTAATTGCTGCCTTTCGCCCGGCTGCCACTA
CAGAGTGTACGGTTGATGATGTCCAAAGACACCTCGGGAACCTCACGGAA
TCCCCCACTTTTGACCCAATGGGTAGTCCGGATGACCAGGGTGCCCCGGC
CGCCCGAAGGGCACATCCCCCACTACTCTAGGCCTTGGGCGCCCTCGCTG
GTCAAAAACCACGTCTAGGGGAACACCCACACCCGTTGCCCCCCGGGGGT
TTCCGGGCATGTTGGAGTCGGCCTTCCCCACGATGCCTCGCGCGGCACAG
CAACCCCACCCCGTGTTCCCTCTGTCCCCCGCCTCCCACAGCCGTGCGCG
CGCGCTGTCCTCCGGTTGGAGCGCGGCCCCCGCGGTCTGTCGGCCCGGTC
TCCGCCGCTTCGACCCCCCCGCGCCCCGCGGTCGCGCGCCGGGCCCCTTT
GTGGGGTGTCACCGCCCCGCGTCTGGGGGCGTCGCCCCCGCACCCCCGCC
CGGCCTCCCGCGCGGTGCGGGCGCCCCGCGCCGCCCCCTGTGCTCCCCTC
TCTGCGCGTCCGGGCTGCTCTCCTCGGACCCGTGCGGCCCCGCGGCGTGA
TCAACCCGCGCCTCTCC
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