EY702581 | Citrus Genome Database

Overview


Name	EY702581
Unique Name	EY702581
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	943

Libraries


Library Name	Type
Sweet orange fruit, development stadium (2 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
EY702581_ssr423	microsatellite	EY702581_ssr423:423..434.	BLAST: Citrus ESTs to Prunus persica proteins V1

Homology

[Close]

BLAST of EY702581 vs. ExPASy Swiss-Prot
Match: DCAM_SOLTU (S-adenosylmethionine decarboxylase proenzyme OS=Solanum tuberosum GN=SAMDC PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.365e-32
Identity = 61/93 (65.59%), Postives = 71/93 (76.34%), Query Frame = 3

Query:   69 TKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRGAGFYKTNERSVALMTEDSGIRKILPKSEICDFEFHPCAHSMNTIGGDPACTIHAPPQD 347
            T++WHVYSASA +    +PVYTLEMCMTGLDR++ + FYKT E S A MT  SGIRKILPKSEICDFEF PC +SMN+I G    TIH  P+D
Sbjct:  162 TQKWHVYSASAGSVQSNDPVYTLEMCMTGLDREKASVFYKTEESSAAHMTVRSGIRKILPKSEICDFEFEPCGYSMNSIEGAAVSTIHITPED 254

HSP 2 Score: 31.5722 bits (70), Expect = 5.365e-32
Identity = 13/26 (50.00%), Postives = 21/26 (80.77%), Query Frame = 2

Query:  356 HATLDDVGYDLEGVKLTPLLERVLAC 433
            +A+ + VGY+ + ++L PL+ERVLAC
Sbjct:  258 YASFESVGYNPKTMELGPLVERVLAC 283

[Close]

BLAST of EY702581 vs. ExPASy Swiss-Prot
Match: DCAM_DATST (S-adenosylmethionine decarboxylase proenzyme OS=Datura stramonium GN=SAMDC PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 9.097e-32
Identity = 59/93 (63.44%), Postives = 68/93 (73.12%), Query Frame = 3

Query:   69 TKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRGAGFYKTNERSVALMTEDSGIRKILPKSEICDFEFHPCAHSMNTIGGDPACTIHAPPQD 347
            T++WHVYSASA      +PVYTLEMCMTGLDR++ + FYKT   S A MT  SGIRKILP SEICDFEF PC +SMN+I G    TIH  P+D
Sbjct:  162 TQKWHVYSASAGPVQSNDPVYTLEMCMTGLDREKASVFYKTEGSSAAHMTVRSGIRKILPNSEICDFEFEPCGYSMNSIEGAAVSTIHITPED 254

HSP 2 Score: 36.1946 bits (82), Expect = 9.097e-32
Identity = 15/26 (57.69%), Postives = 22/26 (84.62%), Query Frame = 2

Query:  356 HATLDDVGYDLEGVKLTPLLERVLAC 433
            +A+ + VGYDL+ ++L PL+ERVLAC
Sbjct:  258 YASFESVGYDLKTMELGPLVERVLAC 283

[Close]

BLAST of EY702581 vs. ExPASy Swiss-Prot
Match: DCAM_TOBAC (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana tabacum GN=SAMDC PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.777e-31
Identity = 58/92 (63.04%), Postives = 67/92 (72.83%), Query Frame = 3

Query:   72 KRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRGAGFYKTNERSVALMTEDSGIRKILPKSEICDFEFHPCAHSMNTIGGDPACTIHAPPQD 347
            ++WHVYSASA      +PVYTLEMCMTGLDR++ + FYKT   S A MT  SGIRKILP SEICDFEF PC +SMN+I G    TIH  P+D
Sbjct:  163 QKWHVYSASAGPIQSNDPVYTLEMCMTGLDREKASVFYKTEGSSAAHMTVRSGIRKILPNSEICDFEFEPCGYSMNSIEGAALSTIHITPED 254

HSP 2 Score: 36.1946 bits (82), Expect = 5.777e-31
Identity = 15/26 (57.69%), Postives = 22/26 (84.62%), Query Frame = 2

Query:  356 HATLDDVGYDLEGVKLTPLLERVLAC 433
            +A+ + VGYD++ +KL PL+ERVLAC
Sbjct:  258 YASFEAVGYDMKTMKLGPLVERVLAC 283

[Close]

BLAST of EY702581 vs. ExPASy Swiss-Prot
Match: DCAM_NICSY (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana sylvestris GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.777e-31
Identity = 58/92 (63.04%), Postives = 67/92 (72.83%), Query Frame = 3

Query:   72 KRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRGAGFYKTNERSVALMTEDSGIRKILPKSEICDFEFHPCAHSMNTIGGDPACTIHAPPQD 347
            ++WHVYSASA      +PVYTLEMCMTGLDR++ + FYKT   S A MT  SGIRKILP SEICDFEF PC +SMN+I G    TIH  P+D
Sbjct:  163 QKWHVYSASAGPIQSNDPVYTLEMCMTGLDREKASVFYKTEGSSAAHMTVRSGIRKILPNSEICDFEFEPCGYSMNSIEGAALSTIHITPED 254

HSP 2 Score: 36.1946 bits (82), Expect = 5.777e-31
Identity = 15/26 (57.69%), Postives = 22/26 (84.62%), Query Frame = 2

Query:  356 HATLDDVGYDLEGVKLTPLLERVLAC 433
            +A+ + VGYD++ +KL PL+ERVLAC
Sbjct:  258 YASFEAVGYDMKTMKLGPLVERVLAC 283

[Close]

BLAST of EY702581 vs. ExPASy Swiss-Prot
Match: DCAM_SOLCI (S-adenosylmethionine decarboxylase proenzyme OS=Solanum chilense GN=SAMDC PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 7.524e-31
Identity = 59/93 (63.44%), Postives = 68/93 (73.12%), Query Frame = 3

Query:   69 TKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRGAGFYKTNERSVALMTEDSGIRKILPKSEICDFEFHPCAHSMNTIGGDPACTIHAPPQD 347
            T++WHVYSASA      +PVYTLEMCM GLDR++ + FYKT E S A MT  SGIRKILPK EICDFEF PC +SMN+I G    TIH  P+D
Sbjct:  160 TQKWHVYSASAGTVQCNDPVYTLEMCMAGLDREKASVFYKTEESSAAHMTVRSGIRKILPKFEICDFEFEPCGYSMNSIEGAAVSTIHITPED 252

HSP 2 Score: 33.113 bits (74), Expect = 7.524e-31
Identity = 14/26 (53.85%), Postives = 20/26 (76.92%), Query Frame = 2

Query:  356 HATLDDVGYDLEGVKLTPLLERVLAC 433
            +A+ + VGYD +  +L PL+ERVLAC
Sbjct:  256 YASFESVGYDPKTTELGPLVERVLAC 281

[Close]

BLAST of EY702581 vs. ExPASy Swiss-Prot
Match: DCAM1_ARATH (S-adenosylmethionine decarboxylase proenzyme 1 OS=Arabidopsis thaliana GN=SAMDC1 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 3.666e-30
Identity = 60/94 (63.83%), Postives = 71/94 (75.53%), Query Frame = 3

Query:   69 TKRWHVYSASAEAGSHVNP-VYTLEMCMTGLDRKRGAGFYKTNERSVALMTEDSGIRKILPKSEICDFEFHPCAHSMNTIGGDPACTIHAPPQD 347
            TK+WHVY+ASA+  S+ N  VYTLEMCMTGLDR++ A FYK        MT++SGIRKILPKSEICDFEF PC +SMN+I GD   TIH  P+D
Sbjct:  158 TKKWHVYAASAQDSSNCNNNVYTLEMCMTGLDREKAAVFYKDEADKTGSMTDNSGIRKILPKSEICDFEFEPCGYSMNSIEGDAISTIHVTPED 251

HSP 2 Score: 27.335 bits (59), Expect = 3.666e-30
Identity = 11/26 (42.31%), Postives = 18/26 (69.23%), Query Frame = 2

Query:  356 HATLDDVGYDLEGVKLTPLLERVLAC 433
            +A+ + VGYD   + L+ L+ RVL+C
Sbjct:  255 YASFEAVGYDFNTLDLSQLVTRVLSC 280

[Close]

BLAST of EY702581 vs. ExPASy Swiss-Prot
Match: DCAM_HELAN (S-adenosylmethionine decarboxylase proenzyme OS=Helianthus annuus GN=SAMDC PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 6.217e-30
Identity = 56/95 (58.95%), Postives = 71/95 (74.74%), Query Frame = 3

Query:   72 KRWHVYSASAEAGSHVN---PVYTLEMCMTGLDRKRGAGFYKTNERSVALMTEDSGIRKILPKSEICDFEFHPCAHSMNTIGGDPACTIHAPPQD 347
            ++WHVYSASAE+ + V    PVYTLEM MTGL ++  + F+K+   S A+MTEDSGIRKILP+S+ICDF+F PC +SMN I GD   TIH  P+D
Sbjct:  158 QKWHVYSASAESANLVTQTAPVYTLEMSMTGLSKRNASVFFKSESSSAAVMTEDSGIRKILPESQICDFDFDPCGYSMNAIEGDAISTIHVTPED 252

HSP 2 Score: 33.113 bits (74), Expect = 6.217e-30
Identity = 14/26 (53.85%), Postives = 20/26 (76.92%), Query Frame = 2

Query:  356 HATLDDVGYDLEGVKLTPLLERVLAC 433
            +A+ + VGYD + + LT L+ERVLAC
Sbjct:  256 YASFEAVGYDFKSMGLTVLIERVLAC 281

[Close]

BLAST of EY702581 vs. ExPASy Swiss-Prot
Match: DCAM_IPONI (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea nil GN=SAMDC PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 8.094e-30
Identity = 54/92 (58.70%), Postives = 69/92 (75.00%), Query Frame = 3

Query:   72 KRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRGAGFYKTNERSVALMTEDSGIRKILPKSEICDFEFHPCAHSMNTIGGDPACTIHAPPQD 347
            ++WHVYSASAE+  +  P+YTLEMCMTGLD+K  + F+KT   S A+MT+ SGIRKILP S+ICDF+F PC +SMN + G    TIH  P+D
Sbjct:  161 QQWHVYSASAESAENTFPIYTLEMCMTGLDKKSASVFFKTQSSSAAVMTDASGIRKILPGSDICDFDFEPCGYSMNAVEGGTISTIHVTPED 252

HSP 2 Score: 29.261 bits (64), Expect = 8.094e-30
Identity = 11/26 (42.31%), Postives = 19/26 (73.08%), Query Frame = 2

Query:  356 HATLDDVGYDLEGVKLTPLLERVLAC 433
            +A+ + +GYD + V L  L++RVL+C
Sbjct:  256 YASFEAMGYDFKDVNLDALIQRVLSC 281

[Close]

BLAST of EY702581 vs. ExPASy Swiss-Prot
Match: DCAM_IPOBA (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea batatas GN=SAMDC PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.787e-29
Identity = 54/92 (58.70%), Postives = 68/92 (73.91%), Query Frame = 3

Query:   72 KRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRGAGFYKTNERSVALMTEDSGIRKILPKSEICDFEFHPCAHSMNTIGGDPACTIHAPPQD 347
            ++WHVYSASAE+  +  P+YTLEMCMTGLD+K  + F+KT   S A+MT+ SGIRKILP SEICDF+F PC +SMN + G     IH  P+D
Sbjct:  161 QQWHVYSASAESAENTFPIYTLEMCMTGLDKKSASVFFKTQSSSAAVMTDASGIRKILPGSEICDFDFEPCGYSMNAVEGGAISPIHVTPED 252

HSP 2 Score: 29.261 bits (64), Expect = 1.787e-29
Identity = 11/26 (42.31%), Postives = 19/26 (73.08%), Query Frame = 2

Query:  356 HATLDDVGYDLEGVKLTPLLERVLAC 433
            +A+ + +GYD + V L  L++RVL+C
Sbjct:  256 YASFEAMGYDFKDVNLDALIQRVLSC 281

[Close]

BLAST of EY702581 vs. ExPASy Swiss-Prot
Match: DCAM2_DIACA (S-adenosylmethionine decarboxylase proenzyme 2 OS=Dianthus caryophyllus GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.325e-29
Identity = 54/92 (58.70%), Postives = 70/92 (76.09%), Query Frame = 3

Query:   72 KRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRGAGFYKTNERSVALMTEDSGIRKILPKSEICDFEFHPCAHSMNTIGGDPACTIHAPPQD 347
            ++WHVYSA+AE  ++ +PVYTLEMCMTGLD+++ + F+K+   S A+MTE SGIRKILP S ICDF+F PC +SMN I G    TIH  P+D
Sbjct:  174 QKWHVYSATAET-NYDDPVYTLEMCMTGLDKEKASVFFKSQSASAAVMTESSGIRKILPDSVICDFDFEPCGYSMNAIEGPAVSTIHITPED 264

HSP 2 Score: 32.7278 bits (73), Expect = 2.325e-29
Identity = 15/26 (57.69%), Postives = 20/26 (76.92%), Query Frame = 2

Query:  356 HATLDDVGYDLEGVKLTPLLERVLAC 433
            +A+ + VGYDL+ V L  L+ERVLAC
Sbjct:  268 YASFEAVGYDLQVVDLNLLVERVLAC 293

The following BLAST results are available for this feature:

BLAST of EY702581 vs. ExPASy Swiss-Prot

BLAST of EY702581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24


Match Name	E-value	Identity	Description
DCAM_SOLTU	5.365e-32	65.59	S-adenosylmethionine decarboxylase proenzyme OS=So...	[more]
DCAM_DATST	9.097e-32	63.44	S-adenosylmethionine decarboxylase proenzyme OS=Da...	[more]
DCAM_TOBAC	5.777e-31	63.04	S-adenosylmethionine decarboxylase proenzyme OS=Ni...	[more]
DCAM_NICSY	5.777e-31	63.04	S-adenosylmethionine decarboxylase proenzyme OS=Ni...	[more]
DCAM_SOLCI	7.524e-31	63.44	S-adenosylmethionine decarboxylase proenzyme OS=So...	[more]
DCAM1_ARATH	3.666e-30	63.83	S-adenosylmethionine decarboxylase proenzyme 1 OS=...	[more]
DCAM_HELAN	6.217e-30	58.95	S-adenosylmethionine decarboxylase proenzyme OS=He...	[more]
DCAM_IPONI	8.094e-30	58.70	S-adenosylmethionine decarboxylase proenzyme OS=Ip...	[more]
DCAM_IPOBA	1.787e-29	58.70	S-adenosylmethionine decarboxylase proenzyme OS=Ip...	[more]
DCAM2_DIACA	2.325e-29	58.70	S-adenosylmethionine decarboxylase proenzyme 2 OS=...	[more]

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Properties


Property Name	Value
Genbank description	CS00-C3-701-009-F11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY702581 ID=EY702581; Name=EY702581; organism=Citrus sinensis; type=EST; length=943bp
AGACTGGTCCCCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGGTAGTCCTGACCCACAAAGAGATGGCATGTTTACTCTGCTTCTGC
TGAAGCAGGAAGCCATGTAAACCCAGTTTACACTCTAGAGATGTGCATGA
CTGGTTTGGACAGAAAGAGGGGGGCTGGCTTCTACAAAACTAATGAAAGG
TCCGTGGCTCTGATGACCGAGGACTCTGGCATCAGAAAGATTCTTCCAAA
ATCTGAGATTTGTGATTTTGAGTTTCACCCTTGCGCTCACTCCATGAATA
CCATTGGAGGGGATCCAGCATGTACTATCCACGCCCCCCCCCAAGACGCC
TCCCCCATGCCACTCTTGACGATGTGGGTTATGATCTTGAGGGTGTCAAG
TTGACTCCCTTGCTTGAGAGGGTGCTTGCTTGCTCCACACCCCGTCACCC
TCCTCCCGCCCCGCATTTCCGCCCCGCCCCCCATGCAGCACCGAGACTCG
CACCGCTCGGAGCTCCACCCCACGCCCCGCCGCCAAACGACGTACGAACA
CCTCCCCGCCCACCGCCCCCCGGATGGAACCACGCCTTCCCGAGCACCGA
CTCCCCCCCCCTCTCCCGCGGCAATCGTTGGAATCCTCCTCCCACCCAGC
CCTCCGCCCCACCACCACTCCTCAGCGCAAGCACTGCTCCCCCACGCACG
CGCTCCGCGGCGCCCCCGCCCCCCCGCCGCTCGCGCGGCAGCCGCAGCCC
GCGGGGGCCGCGGCCCAGCGCTCCGCGTCGCCGCCTTGCACCNCTTCGCC
GCCCCGCCCGCCCCTCCGGCGCGGCGCAGGCGCCCCCGTGCGGGTGGCGG
GGCGCGAAGGGTGGGGGGTAGTCGCGTGGCGTGGTGCGCCACCAATGCCC
CTGGCGCGCGCGGGGCACCAACAGAGGGGGCCGGCGTCCCCCA