DY305580

Overview
NameDY305580
Unique NameDY305580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305580_ssr22 microsatellite DY305580_ssr22:22..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1115 contig Csv1_Contig1115:113..763. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY305580 vs. ExPASy Swiss-Prot
Match: ZFP1_WHEAT (Zinc finger protein 1 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.787e-18
Identity = 65/189 (34.39%), Postives = 80/189 (42.33%), Query Frame = 2 
Query:  119 ALEALNSPTTNTHNHHPFRYEDSWTKRRRSKRPRTDESPPLPPAVAAPTEEEYMALCLIMLARGTTTANTAPAERTPSLAPEQRPQDQFPEPPSLKLSYKCSVCNKAFSSYQALGGHKASHR------------KXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHECSICHKSFPTGQALGGHKR 649
            A  A++S T+   + H  +    W KR+RS+R R+              EEE +ALCL+ML+RG      AP              + F  P  +   +KCSVC K+FSSYQALGGHK SHR                                              H CSIC K FPTGQALGGHKR
Sbjct:   23 AAAAVSSATSGEESGHVLQ---GWAKRKRSRRQRS--------------EEENLALCLLMLSRGGKQRVQAPQP------------ESFAAP--VPAEFKCSVCGKSFSSYQALGGHKTSHRVKQPSPPSDAAAAPLVALPAVAAILPSAEPATSSTAASSDGATNRVHRCSICQKEFPTGQALGGHKR 180
The following BLAST results are available for this feature:
BLAST of DY305580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ZFP1_WHEAT2.787e-1834.39Zinc finger protein 1 OS=Triticum aestivum PE=2 SV... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM1CA12RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305580 ID=DY305580; Name=DY305580; organism=Citrus sinensis; type=EST; length=651bp
GAAATCACCTCTCTTCTCCTGCTCTCTCTCTCTCTCTCTCTCTCTCTCGA
AACTCAACAGATTCAACCACAAGAGTCGAGAATTCACCTACAAGAAAAGA
AAAAAATTCACGACTATGGCTCTAGAAGCTCTAAACTCTCCTACAACAAA
CACCCACAATCATCATCCGTTTAGATACGAAGACTCATGGACTAAAAGAA
GGCGCTCAAAACGACCCCGTACCGACGAGTCCCCACCACTGCCACCAGCA
GTAGCAGCTCCCACAGAAGAAGAGTACATGGCTCTCTGTCTCATCATGCT
CGCCCGCGGTACCACCACCGCCAACACCGCTCCAGCCGAAAGAACCCCAT
CCCTGGCGCCGGAACAGCGGCCGCAGGATCAGTTCCCGGAGCCGCCAAGT
TTGAAACTTTCTTACAAGTGCAGTGTGTGCAACAAGGCTTTCTCTTCTTA
CCAGGCCCTTGGTGGGCACAAAGCCAGCCACCGCAAGAACGCTGCTGACG
CCTCGGCTTCTCCCAACGCCGCAGCCGCCAGTGACGTCACCCCACCACCG
TCAGCAACGGCGAGCAGCGGAAGCGGCGGTAGGACCCACGAGTGCTCTAT
TTGTCACAAGTCTTTTCCCACTGGACAAGCTCTAGGAGGCCACAAGCGGT
G
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