DY305575

Overview
NameDY305575
Unique NameDY305575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1251
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6685 contig Csv1_Contig6685:1..1251. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_AERPE (Probable spermidine synthase OS=Aeropyrum pernix GN=speE PE=3 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 1.101e-48
Identity = 106/245 (43.27%), Postives = 152/245 (62.04%), Query Frame = 1
Query:  133 WFEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTV-NQEAFCSKKLNLVVNDAKAELEKRNEK-FDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFAKTWGMGMASDHPFPIML 861
            WF E +  D      +  V+ +G S FQ+IA++     GKVLV+DGK QS+E DEF+YHE L+HP ++ H +P+ V I+GGGEG+  RE LKH+S+E  VM DID+ VV+  R  L   ++ AF   +  +V++DA   +  + E  FDV+  DL DP+E GP  +LY++ +Y R++K  +N  G+FVTQA      T  E  + I NT+ +VFKHV +Y  +VPSF   WG  +ASD   P +L
Sbjct:   15 WFLEWLTPDRATLKHIEDVIFQGRSRFQEIAVVRVSGEGKVLVLDGKTQSSESDEFMYHEALVHPAMILHGSPRKVLILGGGEGATLREVLKHRSVEKAVMVDIDETVVNVAREHLREWHRGAFDDPRAEVVIDDAWNYVASKAETGFDVVIADLVDPLEAGPATRLYSEEYY-RMVKDVMNPGGVFVTQAVSISHLT--EYHAIIRNTVARVFKHVESYGVYVPSFDSMWGFVVASDDKDPRIL 256          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_THET8 (Spermidine synthase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=speE PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 7.888e-47
Identity = 101/240 (42.08%), Postives = 146/240 (60.83%), Query Frame = 1
Query:  178 LNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTV-NQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPV-EGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFAKTWGMGMASDHPFPIMLRKSTTGSRTR 891
            + RV+  G + FQD  L ++K FGKVL++D  +QS E DE+IYHE L+HP +L H  PK V I+GGGEG+  RE LKH ++E  VM DID E+V+  +R +   +Q AF   +  LV++DA+A LE+  E++DV+  DL DPV E  P   LYT  FY R++K  LN  G+   QAG   + TH  V   ++ T+++ F++V +Y  H+P F   +G  +ASD   P    +    +R R
Sbjct:   21 MERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFY-RLVKAHLNPGGVMGMQAGMI-LLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLLASDAFDPAAFSEGVIEARIR 258          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_THET2 (Spermidine synthase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=speE PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 7.888e-47
Identity = 101/240 (42.08%), Postives = 146/240 (60.83%), Query Frame = 1
Query:  178 LNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTV-NQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPV-EGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFAKTWGMGMASDHPFPIMLRKSTTGSRTR 891
            + RV+  G + FQD  L ++K FGKVL++D  +QS E DE+IYHE L+HP +L H  PK V I+GGGEG+  RE LKH ++E  VM DID E+V+  +R +   +Q AF   +  LV++DA+A LE+  E++DV+  DL DPV E  P   LYT  FY R++K  LN  G+   QAG   + TH  V   ++ T+++ F++V +Y  H+P F   +G  +ASD   P    +    +R R
Sbjct:   21 MERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFY-RLVKAHLNPGGVMGMQAGMI-LLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLLASDAFDPAAFSEGVIEARIR 258          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_SULTO (Probable spermidine synthase OS=Sulfolobus tokodaii GN=speE PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 7.888e-47
Identity = 104/240 (43.33%), Postives = 145/240 (60.42%), Query Frame = 1
Query:  175 ALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTV-NQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFAKTWGMGMASDHPFPIMLRKSTTGSRTR 891
            A+ +V+ +  + +Q   L++  RFGK L++DGK+QS   DEFIYHE L+HP LL   NP+ + I+GGGEG+  RE LKHK++++V M DID  V+DF +++L   +Q AF + K  LV+ D    +++  EKFD +  DL DP++  P   LYTK FYE +   +++  GI VTQA  T      E FS IYNTIK VFK V A   +VP+F   WG   ASD   P    K    +R +
Sbjct:   20 AITKVIAEEKTPYQRALLVELARFGKALILDGKIQSTITDEFIYHEALVHPLLLSINNPEKILILGGGEGATLREVLKHKTIKNVTMVDIDPVVIDFAKKYLQEWHQGAFDNPKSKLVIEDGYKFIKETKEKFDAVVIDLTDPIKDSPSQMLYTKEFYEEV--KRISKWGI-VTQA--TSPSFSLETFSIIYNTIKHVFKKVSAGITYVPAFDGLWGFVYASDEVNPAEFSKEEINNRIK 254          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_SULAC (Probable spermidine synthase OS=Sulfolobus acidocaldarius GN=speE PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 7.383e-45
Identity = 101/240 (42.08%), Postives = 144/240 (60.00%), Query Frame = 1
Query:  175 ALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFLTV-NQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFAKTWGMGMASDHPFPIMLRKSTTGSRTR 891
            A+ R+L +  SEFQ + L +  RFGK L+IDGK+QS   DEFIYHE L+HP L+  ++P+ + I+GGGEG+  REAL++KS+  V M DID  V+ F ++ L   +  +F   + NL++ D    +++ NEK++ I  DL DP++  P   LYT  FY R LK  +  NG  VTQA  T      + F+ IY+T+K VFK+V A   +VPSF   WG   ASD   P  L ++    R +
Sbjct:   20 AIKRILIEERSEFQRVILAELFRFGKALIIDGKIQSTLADEFIYHESLVHPLLISLEDPENILILGGGEGATLREALRYKSVRKVTMVDIDPVVIKFAKQNLQEWHMGSFDDSRTNLIIGDGYKFVKETNEKYNAIILDLTDPIQDSPSQLLYTSEFY-RDLKSIITPNGGLVTQA--TSPSFSLDTFAIIYSTLKTVFKNVSAGITYVPSFDGLWGFIYASDVTNPAHLNRNQINDRIK 256          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_SULSO (Probable spermidine synthase OS=Sulfolobus solfataricus GN=speE PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.645e-44
Identity = 99/217 (45.62%), Postives = 140/217 (64.52%), Query Frame = 1
Query:  178 LNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLL-CHQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFAKTWG 822
            + +VL +  + +Q + L++  RFGK L+IDGK+QS   DE IYHE L+HP LL   + PK+V I+GGGEG+  RE LK+KS+E  VM DID++V++F +++L   +Q AF  K+ NLV+ D    +++  EK+D I  DL DP++    Y LYTK FYE+ L+  LN+ G  VTQA  T      EV+ +IYNTIK+VFK   A   ++ SF   WG
Sbjct:   21 IEKVLAEEKTPYQHVTLVEFTRFGKGLIIDGKVQSTLYDEHIYHELLVHPLLLSLTKPPKSVLILGGGEGATLREVLKYKSVEKAVMVDIDEKVIEFAKKYLYEWHQGAFEDKRTNLVITDGLKFIKETKEKYDAIILDLTDPIKNSTSYMLYTKEFYEK-LREILNERGGIVTQA--TSPSFSLEVYVTIYNTIKEVFKEASASYTYMASFDGLWG 234          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_SULIY (Probable spermidine synthase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=speE PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.179e-42
Identity = 101/240 (42.08%), Postives = 143/240 (59.58%), Query Frame = 1
Query:  178 LNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLC-HQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFAKTWGMGMASDHPFPIMLRKSTTGSRTR 891
            + +V  +  + +Q + L++  RFGK L+IDGK+QS   DE IYHE L+HP LL   + PK V I+GGGEG+  RE LK+KS+E  VM DID++V++F +++L   +Q AF  K+ +LV+ D    + +  +K+D I  DL DP++    Y LYTK FYE+ L+  LN  G  VTQA  T      EV+ +IYNTIK+VFK   A   ++ SF   WG         P +L +    SR R
Sbjct:   21 IEKVFAEEKTPYQHVTLVEFTRFGKGLIIDGKVQSTLYDEHIYHELLVHPLLLSLPKPPKNVLILGGGEGATLREVLKYKSVEKAVMVDIDEKVIEFAKKYLYEWHQGAFEDKRTSLVITDGLKFINETKDKYDAIILDLTDPIKDSTSYMLYTKEFYEK-LRGILNQGGGIVTQA--TSPSFSLEVYVTIYNTIKEVFKEASASYTYMASFDGLWGFVYGGVR--PDLLSEDEVNSRIR 255          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_SULIM (Probable spermidine synthase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=speE PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.179e-42
Identity = 101/240 (42.08%), Postives = 143/240 (59.58%), Query Frame = 1
Query:  178 LNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLC-HQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFAKTWGMGMASDHPFPIMLRKSTTGSRTR 891
            + +V  +  + +Q + L++  RFGK L+IDGK+QS   DE IYHE L+HP LL   + PK V I+GGGEG+  RE LK+KS+E  VM DID++V++F +++L   +Q AF  K+ +LV+ D    + +  +K+D I  DL DP++    Y LYTK FYE+ L+  LN  G  VTQA  T      EV+ +IYNTIK+VFK   A   ++ SF   WG         P +L +    SR R
Sbjct:   21 IEKVFAEEKTPYQHVTLVEFTRFGKGLIIDGKVQSTLYDEHIYHELLVHPLLLSLPKPPKNVLILGGGEGATLREVLKYKSVEKAVMVDIDEKVIEFAKKYLYEWHQGAFEDKRTSLVITDGLKFINETKDKYDAIILDLTDPIKDSTSYMLYTKEFYEK-LRGILNQGGGIVTQA--TSPSFSLEVYVTIYNTIKEVFKEASASYTYMASFDGLWGFVYGGVR--PDLLSEDEVNSRIR 255          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_SULIL (Probable spermidine synthase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=speE PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.179e-42
Identity = 101/240 (42.08%), Postives = 143/240 (59.58%), Query Frame = 1
Query:  178 LNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLC-HQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFAKTWGMGMASDHPFPIMLRKSTTGSRTR 891
            + +V  +  + +Q + L++  RFGK L+IDGK+QS   DE IYHE L+HP LL   + PK V I+GGGEG+  RE LK+KS+E  VM DID++V++F +++L   +Q AF  K+ +LV+ D    + +  +K+D I  DL DP++    Y LYTK FYE+ L+  LN  G  VTQA  T      EV+ +IYNTIK+VFK   A   ++ SF   WG         P +L +    SR R
Sbjct:   21 IEKVFAEEKTPYQHVTLVEFTRFGKGLIIDGKVQSTLYDEHIYHELLVHPLLLSLPKPPKNVLILGGGEGATLREVLKYKSVEKAVMVDIDEKVIEFAKKYLYEWHQGAFEDKRTSLVITDGLKFINETKDKYDAIILDLTDPIKDSTSYMLYTKEFYEK-LRGILNQGGGIVTQA--TSPSFSLEVYVTIYNTIKEVFKEASASYTYMASFDGLWGFVYGGVR--PDLLSEDEVNSRIR 255          
BLAST of DY305575 vs. ExPASy Swiss-Prot
Match: SPEE_SULIK (Probable spermidine synthase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=speE PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.179e-42
Identity = 101/240 (42.08%), Postives = 143/240 (59.58%), Query Frame = 1
Query:  178 LNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLC-HQNPKTVFIMGGGEGSAAREALKHKSLESVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPTGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFAKTWGMGMASDHPFPIMLRKSTTGSRTR 891
            + +V  +  + +Q + L++  RFGK L+IDGK+QS   DE IYHE L+HP LL   + PK V I+GGGEG+  RE LK+KS+E  VM DID++V++F +++L   +Q AF  K+ +LV+ D    + +  +K+D I  DL DP++    Y LYTK FYE+ L+  LN  G  VTQA  T      EV+ +IYNTIK+VFK   A   ++ SF   WG         P +L +    SR R
Sbjct:   21 IEKVFAEEKTPYQHVTLVEFTRFGKGLIIDGKVQSTLYDEHIYHELLVHPLLLSLPKPPKNVLILGGGEGATLREVLKYKSVEKAVMVDIDEKVIEFAKKYLYEWHQGAFEDKRTSLVITDGLKFINETKDKYDAIILDLTDPIKDSTSYMLYTKEFYEK-LRGILNQGGGIVTQA--TSPSFSLEVYVTIYNTIKEVFKEASASYTYMASFDGLWGFVYGGVR--PDLLSEDEVNSRIR 255          
The following BLAST results are available for this feature:
BLAST of DY305575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
SPEE_AERPE1.101e-4843.27Probable spermidine synthase OS=Aeropyrum pernix G... [more]
SPEE_THET87.888e-4742.08Spermidine synthase OS=Thermus thermophilus (strai... [more]
SPEE_THET27.888e-4742.08Spermidine synthase OS=Thermus thermophilus (strai... [more]
SPEE_SULTO7.888e-4743.33Probable spermidine synthase OS=Sulfolobus tokodai... [more]
SPEE_SULAC7.383e-4542.08Probable spermidine synthase OS=Sulfolobus acidoca... [more]
SPEE_SULSO1.645e-4445.62Probable spermidine synthase OS=Sulfolobus solfata... [more]
SPEE_SULIY1.179e-4242.08Probable spermidine synthase OS=Sulfolobus islandi... [more]
SPEE_SULIM1.179e-4242.08Probable spermidine synthase OS=Sulfolobus islandi... [more]
SPEE_SULIL1.179e-4242.08Probable spermidine synthase OS=Sulfolobus islandi... [more]
SPEE_SULIK1.179e-4242.08Probable spermidine synthase OS=Sulfolobus islandi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1CA06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305575 ID=DY305575; Name=DY305575; organism=Citrus sinensis; type=EST; length=1251bp
GAGTTATCCCATTTCTGTGCTTCTAATTTGATCATGGGTACCGAGGCTGT
TGAGATCTTATTTGAAAATGGTTTCTCGAAGGTCTGCAATGATACGGATC
CAAATATCAATGGCAACCTCCAAGATTGCTGCTGGTTTGAGGAAGTCATT
GATGATGATCTCAAATGGTCCTTTGCTTTGAACAGAGTGCTGCATAAAGG
GACCAGCGAATTCCAGGATATTGCTCTTTTGGACACAAAGCGTTTTGGAA
AGGTGCTGGTGATTGATGGGAAGATGCAGAGTGCTGAAGTGGATGAATTT
ATTTATCATGAATGCTTGATCCACCCTCCCCTCTTGTGTCACCAGAATCC
CAAAACTGTATTCATAATGGGAGGTGGTGAAGGTTCTGCTGCGAGGGAAG
CTCTCAAGCACAAGTCTCTTGAGAGCGTGGTCATGTGTGACATCGACCAG
GAAGTAGTCGATTTCTGCCGCAGATTTCTGACAGTGAATCAAGAGGCATT
CTGCAGCAAGAAGCTTAATCTTGTTGTTAATGATGCCAAGGCTGAGCTGG
AGAAGAGGAATGAGAAATTTGATGTCATTTTCGGAGATTTAGCTGACCCA
GTTGAAGGGGGACCTTGCTATCAACTCTACACTAAATCTTTCTACGAACG
AATTCTGAAGCCTAAGCTCAATGACAATGGCATCTTTGTTACCCAGGCTG
GACCAACAGGCATTTTCACCCACAAAGAGGTGTTCTCATCCATTTACAAC
ACCATCAAGCAGGTCTTCAAGCATGTGGTGGCATACACTGCTCATGTGCC
ATCTTTTGCAAAAACCTGGGGAATGGGTATGGCGTCAGACCACCCGTTCC
CTATCATGCTGAGGAAATCGACAACAGGATCAAGAACAAGGATATTGCTG
AATTACTCTTTCTAAATGGCCCTTCATTCTTCTCTCCTACACCAAGAACA
AGGCTTTTATTAACCCCGTTGAATAAAACTCATGTTTAACCCCGAGGAAA
AATGCAAAATTAATCCTTGGACATGGTGTGGGGCCTTAAATACAACCCAT
TAGAGTTCCTAATTAGCTCTTAAATGTGTTTGGGGGAAATTGCTGTAACA
AAAGAAAAAAAAAAGGCAAACCAATTTTATAAAGGGTTGGGAAATTAGGA
ATAGATTTTAAATTTATAAAAAACTTTTCCTNTTAAGAAAAACTACATTT
TGGGTTTAAAAAAACACCTTTTTGTTGTTTTTTTNATATACCACCAAAAT
A
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