DY305574

Overview
NameDY305574
Unique NameDY305574
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1282
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305574_ssr555 microsatellite DY305574_ssr555:555..569. BLAST: Citrus ESTs to Prunus persica proteins V1
DY305574_ssr669 microsatellite DY305574_ssr669:669..680. BLAST: Citrus ESTs to Prunus persica proteins V1
DY305574_ssr367 microsatellite DY305574_ssr367:367..378. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY305574 vs. ExPASy Swiss-Prot
Match: ERF58_ARATH (Ethylene-responsive transcription factor ERF058 OS=Arabidopsis thaliana GN=ERF058 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.014e-28
Identity = 58/141 (41.13%), Postives = 66/141 (46.81%), Query Frame = 3
Query:  426 MAATMDFYSSRPVESSCDPFGGELMEALEPFMKSASASTSPSLXXXXXXXXXGTVGXXXXXXXXXXXXXXXXXXXXPNFWPQQQQKSHLYPQGLNFLSPKPVPMKTVGCPPPKPAKLYRGVRQRPWGKWVA*ILLPKTRIR 848
            M  +MDFYS++  + S DPFGGELMEAL PF+KS S  +S            G+                                SH        LSPKPV MK  G    KP KLYRGVRQR WGKWVA I LP+ R R
Sbjct:    1 MTTSMDFYSNKTFQQS-DPFGGELMEALLPFIKSPSNDSSAFAFSLPAPISYGS---------------------------DLHSFSH-------HLSPKPVSMKQTGTSAAKPTKLYRGVRQRHWGKWVAEIRLPRNRTR 106          

HSP 2 Score: 58.5362 bits (140), Expect = 8.014e-28
Identity = 46/137 (33.58%), Postives = 63/137 (45.99%), Query Frame = 2
Query:  827 LAQNPDPLWVGTFDTAKKTALVHNKAAHKPPGRLAPPHFLTYVKLVPIRVASPRIQPSSSSFEANLPAICENLAEHQXXXXXXXXEQNTSAKKKQIHSRKKKNKLLGXKPERSGRVGCIKKRAILSDEGHPGFSSPL 1237
            L +N   LW+GTFDTA++ AL ++KAA+K  G  A  +F       P    +   QP  SS +A L AIC+NLAE          +Q  S KK    S +K++  +  K              +    G  G SSPL
Sbjct:  100 LPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNF-------PDLRHNDEYQPLQSSVDAKLEAICQNLAE-------TTQKQVRSTKKS---SSRKRSSTVAVKLPEEDYSSAGSSPLLTESYGSGGSSSPL 219          
BLAST of DY305574 vs. ExPASy Swiss-Prot
Match: ERF57_ARATH (Ethylene-responsive transcription factor ERF057 OS=Arabidopsis thaliana GN=ERF057 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.267e-15
Identity = 46/125 (36.80%), Postives = 54/125 (43.20%), Query Frame = 3
Query:  492 ELMEALEPFMKSASASTSPSLXXXXXXXXXGTVGXXXXXXXXXXXXXXXXXXXXPNFWPQQQQKSHLYPQ------GLNFLSPKPVPMKTVGCPPPKPAKLYRGVRQRPWGKWVA*ILLPKTRIR 848
            E MEALEPFMK  S+S++ +                                  P    Q Q + HL         G + L+ KP  MK +     KP KLYRGVRQR WGKWVA I LPK R R
Sbjct:   11 EFMEALEPFMKVTSSSSTSNSSNPKPLTPNFIPNNDQVLPVSNQTGPIGLNQLTPTQILQIQTELHLRQNQSRRRAGSHLLTAKPTSMKKIDVAT-KPVKLYRGVRQRQWGKWVAEIRLPKNRTR 134          

HSP 2 Score: 39.6614 bits (91), Expect = 2.267e-15
Identity = 25/72 (34.72%), Postives = 39/72 (54.17%), Query Frame = 2
Query:  827 LAQNPDPLWVGTFDTAKKTALVHNKAAHKPPGRLAPPHFLTYVKLVPIRVASPRIQPSSSSFEANLPAICEN 1042
            L +N   LW+GTF+TA++ AL +++AAHK  G  A  +F   V+    +      Q  S S  A + +IC +
Sbjct:  128 LPKNRTRLWLGTFETAQEAALAYDQAAHKIRGDNARLNFPDIVRQGHYK------QILSPSINAKIESICNS 193          
BLAST of DY305574 vs. ExPASy Swiss-Prot
Match: ERF60_ARATH (Ethylene-responsive transcription factor ERF060 OS=Arabidopsis thaliana GN=ERF060 PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 2.269e-15
Identity = 43/127 (33.86%), Postives = 58/127 (45.67%), Query Frame = 3
Query:  468 SSCDPFGGELMEALEPFMKSASASTSPSLXXXXXXXXXGTVGXXXXXXXXXXXXXXXXXXXXPNFWPQQQQKSHLYPQGLNFLSPKPVPMKTVGCPPPKPAKLYRGVRQRPWGKWVA*ILLPKTRIR 848
            S+ DPF  ELM+AL+P+  +  +S+              ++G                           Q+++ + P     L+PKPVPMK +        KLYRGVRQR WGKWVA I LPK R R
Sbjct:    9 SNTDPFQEELMKALQPYTTNTDSSSPTYSNTVFGFNQTTSLGLNQLTPYQIHQIQNQL----------NQRRNIISPN----LAPKPVPMKNMTAQ-----KLYRGVRQRHWGKWVAEIRLPKNRTR 116          

HSP 2 Score: 43.1282 bits (100), Expect = 2.269e-15
Identity = 25/73 (34.25%), Postives = 38/73 (52.05%), Query Frame = 2
Query:  827 LAQNPDPLWVGTFDTAKKTALVHNKAAHKPPGRLAPPHFLTYVKLVPIRVASPRIQPSSSSFEANLPAICENL 1045
            L +N   LW+GTFDTA++ A+ ++ AA+K  G  A  +F  +              P  SS +A L  IC++L
Sbjct:  110 LPKNRTRLWLGTFDTAEEAAMAYDLAAYKLRGEFARLNFPQFRHEDGYYGGGSCFNPLHSSVDAKLQEICQSL 182          
BLAST of DY305574 vs. ExPASy Swiss-Prot
Match: ERF56_ARATH (Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana GN=ERF056 PE=2 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 7.205e-13
Identity = 26/45 (57.78%), Postives = 28/45 (62.22%), Query Frame = 3
Query:  714 LSPKPVPMKTVGCPPPKPAKLYRGVRQRPWGKWVA*ILLPKTRIR 848
            LSP  + MK +     K   LYRGVRQR WGKWVA I LPK R R
Sbjct:   50 LSPNRIRMKNLTPSTSKTKNLYRGVRQRHWGKWVAEIRLPKNRTR 94          

HSP 2 Score: 43.5134 bits (101), Expect = 7.205e-13
Identity = 31/111 (27.93%), Postives = 53/111 (47.75%), Query Frame = 2
Query:  827 LAQNPDPLWVGTFDTAKKTALVHNKAAHKPPGRLAPPHFLTYVKLVPIRVASPRIQPSSSSFEANLPAICENLAEHQXXXXXXXXEQNTSAKKKQIHSRKKKNKLLGXKPE 1159
            L +N   LW+GTF+TA+K AL +++AA +  G +A  +F   +           + P  SS +  L AIC++L + +          +   K+  ++S   K +L   K E
Sbjct:   88 LPKNRTRLWLGTFETAEKAALAYDQAAFQLRGDIAKLNFPNLI--------HEDMNPLPSSVDTKLQAICKSLRKTE-----EICSVSDQTKEYSVYSVSDKTELFLPKAE 185          
The following BLAST results are available for this feature:
BLAST of DY305574 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ERF58_ARATH8.014e-2841.13Ethylene-responsive transcription factor ERF058 OS... [more]
ERF57_ARATH2.267e-1536.80Ethylene-responsive transcription factor ERF057 OS... [more]
ERF60_ARATH2.269e-1533.86Ethylene-responsive transcription factor ERF060 OS... [more]
ERF56_ARATH7.205e-1357.78Ethylene-responsive transcription factor ERF056 OS... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM1CA05RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305574 ID=DY305574; Name=DY305574; organism=Citrus sinensis; type=EST; length=1282bp
GCTTTCTGTTAATCATCTGTCTTTGGAAAATCTGATTTTTGGGTTTGTTT
TCAAAAAGTATAGAAAAGAAACAATGAGTTTAAAGCAAACTTAGAAGGAT
TTCTCGAAAGCCAGGTGTTTTCAGAATCGAGATCCAGATTTCTTTGGATT
ATTTTTAATAACTTTGTTTTCTCGTTAATTTTAGCTCTTCGTTTTCTTTT
TTTCCTTTTTTTTTGGTTAGTTGAATCAGCTTGGAGGGTTATTTTTGGTC
CCTCTCGAAGTTGGTTTTAGGTTCTTGAATTCAAGGGGTTGTGTATTTTT
AAACCTCTTTGATCTTTTTCAAATCTAAAGGCCTTGTTCTTTAATTTTGG
TGAGAACCAGGGTGTTTTTATTTATTTATATTTTATTTTTCTAACAAATT
TTACCTAAAGTGTTTGGTTCCAGAAATGGCAGCTACAATGGATTTCTACA
GTAGCAGACCAGTTGAATCATCGTGTGATCCGTTTGGTGGTGAACTTATG
GAAGCGCTTGAACCTTTTATGAAAAGTGCTTCTGCTTCTACTTCACCAAG
TCTCCAGCAGCAGCAGCAGCATTATCAACAGGGCACTGTTGGGCTAAATA
ACCTTAACCTATTCCAGATTCAGCAGATCCAAGCACAGATCCAGCTTCAA
AATCCAAACTTTTGGCCACAGCAGCAGCAGAAAAGTCATCTTTACCCTCA
GGGTTTGAACTTCCTCTCCCCGAAACCAGTCCCGATGAAAACGGTGGGCT
GTCCTCCGCCCAAGCCGGCGAAGCTTTACAGAGGAGTTAGACAGCGTCCT
TGGGGCAAATGGGTCGCTTAAATCCTCTTGCCCAAAACCCGGATCCGCTC
TGGGTCGGCACCTTTGACACGGCCAAAAAAACCGCGTTGGTCCACAATAA
GGCGGCCCACAAGCCACCTGGGCGACTCGCTCCGCCTCACTTCCTTACCT
ACGTCAAATTGGTTCCAATTCGGGTGGCGAGTCCGCGAATACAACCTTCT
TCATCTTCCTTTGAAGCAAATTTGCCCGCCATTTGTGAAAACTTGGCCGA
ACACCAAAAACGGCGGAAAAAAAAAAAAAAAGAACAAAATACCTCCGCCA
AAAAAAAACAAATCCATTCCCGGAAAAAAAAAAATAAACTCCTTGGGNGG
AAACCGGAGAGATCGGGGCGCGTGGGGTGTATAAAAAAGAGAGCAATTTT
AAGTGATGAGGGTCACCCCGGGTTTTCCTCCCCCCTTTTTTTCCCAATAT
TATAANGTGGTATAGAGAAATTATCATCTCAA
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