DY305567

Overview
NameDY305567
Unique NameDY305567
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1250
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305567_ssr1216 microsatellite DY305567_ssr1216:1216..1225. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_PARUW (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Protochlamydia amoebophila (strain UWE25) GN=ispG PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 4.619e-39
Identity = 88/206 (42.72%), Postives = 123/206 (59.71%), Query Frame = 3
Query:  177 GTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGSNXXXXXXXXXXXXXXXEAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVKRGNSMDYA 794
            G  L++ +  +   E  E++      +IL           R+  +R+ FE+L +N LN+PVI +  +      +D ++ A                  E P  D  FLR  SF++LQ  R+R +KT+++SCPSCGRTLF+LQ+++  I+ +TSHLPGV IAIMGCIVNGPGEMADADFGYVG  P KIDLYVGK  V++   +D+A
Sbjct:  436 GQPLIIQITDETEKEWKEVISLKPQLIIL------SPSTNRLHYSRQFFEWLQQNQLNYPVILNFTYQG--ENEDTILLASMECGSLLCDGLGEGVWLEGP-YDILFLRQLSFSILQAARLRMSKTDFISCPSCGRTLFNLQDVTKRIQSRTSHLPGVKIAIMGCIVNGPGEMADADFGYVGSKPGKIDLYVGKECVEK--DIDFA 630          
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_LEPIC (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=ispG PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.643e-32
Identity = 63/95 (66.32%), Postives = 76/95 (80.00%), Query Frame = 3
Query:  483 QDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVV 767
            +D + +   S++LLQG R+R TKTEY+SCPSCGRTLFDLQE +A I+ +T HL GV IA+MGCIVNGPGEMADADFGYVG  P K+ LY GK +V
Sbjct:  540 KDIEEIFQLSYDLLQGTRLRLTKTEYISCPSCGRTLFDLQETTARIKSRTGHLKGVKIAVMGCIVNGPGEMADADFGYVGAGPGKVHLYRGKEIV 634          

HSP 2 Score: 22.7126 bits (47), Expect = 1.643e-32
Identity = 8/14 (57.14%), Postives = 9/14 (64.29%), Query Frame = 2
Query:  803 LIQLINDPRAWSDP 844
            L+QLI D   W DP
Sbjct:  647 LVQLIKDNELWQDP 660          
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_LEPIN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira interrogans GN=ispG PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.786e-32
Identity = 63/95 (66.32%), Postives = 76/95 (80.00%), Query Frame = 3
Query:  483 QDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVV 767
            +D + +   S++LLQG R+R TKTEY+SCPSCGRTLFDLQE +A I+ +T HL GV IA+MGCIVNGPGEMADADFGYVG  P K+ LY GK +V
Sbjct:  540 KDIEEIFQLSYDLLQGTRLRLTKTEYISCPSCGRTLFDLQETTARIKSRTGHLKGVKIAVMGCIVNGPGEMADADFGYVGAGPGKVHLYRGKEIV 634          

HSP 2 Score: 21.9422 bits (45), Expect = 2.786e-32
Identity = 8/14 (57.14%), Postives = 9/14 (64.29%), Query Frame = 2
Query:  803 LIQLINDPRAWSDP 844
            L+QLI D   W DP
Sbjct:  647 LVQLIKDNGLWQDP 660          
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_LEPBL (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=ispG PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.078e-31
Identity = 62/97 (63.92%), Postives = 77/97 (79.38%), Query Frame = 3
Query:  483 QDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVKR 773
            +D + +   S++LLQG R+R TKTEY+SCPSCGRTLF+LQE +A I+ +T HL GV IA+MGCIVNGPGEMADADFGYVG  P K+ LY GK +V +
Sbjct:  540 KDIEEIFQLSYDLLQGTRLRLTKTEYISCPSCGRTLFNLQETTARIKSRTGHLKGVKIAVMGCIVNGPGEMADADFGYVGAGPGKVHLYRGKEIVMK 636          
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_LEPBJ (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=ispG PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.078e-31
Identity = 62/97 (63.92%), Postives = 77/97 (79.38%), Query Frame = 3
Query:  483 QDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVKR 773
            +D + +   S++LLQG R+R TKTEY+SCPSCGRTLF+LQE +A I+ +T HL GV IA+MGCIVNGPGEMADADFGYVG  P K+ LY GK +V +
Sbjct:  540 KDIEEIFQLSYDLLQGTRLRLTKTEYISCPSCGRTLFNLQETTARIKSRTGHLKGVKIAVMGCIVNGPGEMADADFGYVGAGPGKVHLYRGKEIVMK 636          
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_AKKM8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=ispG PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 9.654e-29
Identity = 60/86 (69.77%), Postives = 70/86 (81.40%), Query Frame = 3
Query:  513 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVK 770
            FN+LQ    R T+ +YVSCPSCGRTL+++QE +A IR+ T HL GV IA+MGCIVNGPGEMADADFGYVGGAP KI+LYV  T VK
Sbjct:  474 FNILQATGTRLTRADYVSCPSCGRTLYNIQEATARIRKATEHLKGVKIAVMGCIVNGPGEMADADFGYVGGAPNKINLYVKHTPVK 559          
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_CHLMU (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia muridarum GN=ispG PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.151e-28
Identity = 84/236 (35.59%), Postives = 113/236 (47.88%), Query Frame = 3
Query:  141 ELSTGAYKLL-PEGTRLVVSLRGDESYEELE------------ILKDIDATMILHD----LPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGSNXXXXXXXXXXXXXXXEAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVKRGNSMDYA 794
            +++TG   L  P+G  +  S+R      E+E            IL +++  + L D     PF   ++  +  ARR F      N + PV         + ++   I                         D    R   F++LQ   +R+T  EY+SCP CGRTLFDL E+S  I+E+T HLP G+ IA+MGCIVNGPGEMADADFGYVG  P  IDLYV    VK    M+ A
Sbjct:  352 DITTGKKDLTSPDGVVIPKSMRSSAIVSEIEKHLRIFYKEDAPILNEMNEELWLSDKTLATPFVYFEVESIYQARRFFAL--RQNYSQPVCLSFSLKANLSKNSAAIDLSIRLGALLLDGLGSCVLFNF--SDLKLARTLGFSILQSANIRSTTVEYISCPGCGRTLFDLPEVSQRIKERTKHLPGGLKIAVMGCIVNGPGEMADADFGYVGSKPGMIDLYVKHKCVKSYVPMENA 583          
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_CHLCV (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydophila caviae GN=ispG PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 4.791e-28
Identity = 60/108 (55.56%), Postives = 74/108 (68.52%), Query Frame = 3
Query:  471 EAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVKRGNSMDYA 794
            + P      +R+ +F+ LQ   +R  KTEY+SCP CGRTLFDL E++  IREKT HL G+ IA+MGCIVNGPGEMAD+DFG+VG     IDLYV  T VK    M+ A
Sbjct:  481 DLPNVSLPTVREIAFSTLQSAGVRLVKTEYISCPGCGRTLFDLPEVTTRIREKTKHLVGLKIAVMGCIVNGPGEMADSDFGFVGSKTGMIDLYVKHTCVKAHIPMEDA 588          
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_CHLPN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia pneumoniae GN=ispG PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.067e-27
Identity = 59/95 (62.11%), Postives = 70/95 (73.68%), Query Frame = 3
Query:  510 SFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVKRGNSMDYA 794
            +F  LQ   +R  KTEY+SCP CGRTLFDL+E++  IR++T HLPG+ IAIMGCIVNGPGEMADADFG+VG     IDLYV  T VK    M+ A
Sbjct:  495 AFGTLQNAGVRLVKTEYISCPMCGRTLFDLEEVTTRIRKRTQHLPGLKIAIMGCIVNGPGEMADADFGFVGSKTGMIDLYVKHTCVKAHIPMEDA 589          
BLAST of DY305567 vs. ExPASy Swiss-Prot
Match: ISPG_CHLFF (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydophila felis (strain Fe/C-56) GN=ispG PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.821e-27
Identity = 60/108 (55.56%), Postives = 72/108 (66.67%), Query Frame = 3
Query:  471 EAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPAKIDLYVGKTVVKRGNSMDYA 794
            + P      +R+ +F  LQ   +R  KTEY+SCP CGRTLFDL E++  IR KT HL G+ IA+MGCIVNGPGEMADADFG+VG     IDLYV  T VK    M+ A
Sbjct:  481 DLPNIPLPTVREIAFGTLQSAGVRLVKTEYISCPGCGRTLFDLPEVTTRIRNKTKHLVGLKIAVMGCIVNGPGEMADADFGFVGSKTGMIDLYVKHTCVKAHIPMEDA 588          
The following BLAST results are available for this feature:
BLAST of DY305567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
ISPG_PARUW4.619e-3942.724-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPIC1.643e-3266.324-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPIN2.786e-3266.324-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPBL2.078e-3163.924-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPBJ2.078e-3163.924-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_AKKM89.654e-2969.774-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLMU2.151e-2835.594-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLCV4.791e-2855.564-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLPN1.067e-2762.114-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLFF1.821e-2755.564-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1BH06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305567 ID=DY305567; Name=DY305567; organism=Citrus sinensis; type=EST; length=1250bp
GAGAGCTTCCGTCAGTTGATGATCATGATGCTCGTCTAGCTCTGAAACGG
TTGGTAGATATAAGTATGGGAGTTATAACTCCTTTGTCTGAGCAGCTAAC
AAAGCCACTGCCCCACGCCATGGTTCTGGTAAACCTTCAGGAGTTATCAA
CTGGCGCATACAAGCTTTTGCCAGAAGGAACACGATTGGTTGTATCATTA
CGCGGTGACGAATCCTACGAAGAGCTGGAAATCCTCAAAGATATTGACGC
AACAATGATTCTTCATGATTTACCCTTTAATGAAGATAAAATTGGCAGAG
TACAGGCAGCTAGGAGGCTATTTGAGTATCTATCAGAAAATAATCTAAAC
TTCCCTGTAATTCACCATATTCAGTTTCCGAATGGGATTCACAGGGATGA
CTTGGTCATTGGTGCCGGTTCCAATGTAGGAGCCCTTTTAGTCGATGGAC
TTGGAGATGGTTTGCTGTTAGAAGCCCCAGGACAAGATTTTGATTTTCTG
AGGGACACATCTTTCAACTTACTACAAGGTTGCAGAATGAGGAATACAAA
GACGGAGTATGTCTCATGTCCATCATGTGGTAGAACTTTGTTTGACCTTC
AAGAAATAAGTGCAGAGATACGAGAGAAAACATCGCACTTGCCCGGTGTT
TCGATTGCTATCATGGGTTGCATTGTCAATGGACCTGGAGAGATGGCTGA
TGCAGACTTTGGGTATGTTGGTGGGGCTCCTGCAAAGATTGACCTGTATG
TCGGGAAGACTGTGGTGAAGCGTGGTAATTCAATGGATTACGCACCCAAT
GCCTGATCCAACTAATAAATGATCCCCGCGCCTGGTCCGACCCTCCCCCT
AAGATTACGATATGGGAATTTTTTTCTTCTGAATAAAAAAAAAGAACTCG
TTCGAGGGAAACCCTCTTACCCCCCCTGTGTTATATAATTTCCAATTGGG
AAAAAAAACTCCCCCTATTTCCAATCAATTAAATTTACGCGTTCATCGAC
GGACCTTTGTTTTCCCAGGCAAAGCGGGATTTTTTCTTCCCTTGAATGGT
AAATCAAGAAGAGAGACCTCCCACTTAATTCAAAAGAATAGCGTTTTGTT
ACTTTTTTTTTTTATTTTTTTACACACAAAAAAGAAAGATTTTTTAAGGT
CTCGAATCAATCCGCAGCCACGTAGCCCGCCTCTCTTCTTTTGTTTTTTT
GGTGTGGTTCGTTGTTCTCTCTCTCTTTTGTTATGAACAGAAAATAAAAT
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