DY305566

Overview
NameDY305566
Unique NameDY305566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1246
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305566 vs. ExPASy Swiss-Prot
Match: GPX4_CITSI (Probable phospholipid hydroperoxide glutathione peroxidase OS=Citrus sinensis GN=CSA PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 2.203e-49
Identity = 95/108 (87.96%), Postives = 97/108 (89.81%), Query Frame = 1
Query:  520 GLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSSSWWIGKGKVLNVMPP 843
            GLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFS      +G V+    P
Sbjct:   42 GLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAP 149          

HSP 2 Score: 77.7962 bits (190), Expect = 1.491e-13
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 2
Query:  152 MASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQ 271
            MASQSKTSVHDF+VKDAKGQDVDLSIYKGKLLLIVNVASQ
Sbjct:    1 MASQSKTSVHDFTVKDAKGQDVDLSIYKGKLLLIVNVASQ 40          
BLAST of DY305566 vs. ExPASy Swiss-Prot
Match: GPX4_MESCR (Probable phospholipid hydroperoxide glutathione peroxidase OS=Mesembryanthemum crystallinum GN=GPXMC1 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.529e-42
Identity = 82/108 (75.93%), Postives = 93/108 (86.11%), Query Frame = 1
Query:  520 GLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSSSWWIGKGKVLNVMPP 843
            GLTNSNY EL++LY++YK++GLEILAFPCNQFG QEPGDNEQI EFACTRFKAEFPIFDKVDVNG NAAP+YK+LKSSKGGLFGD IKWNF+       GKV++   P
Sbjct:   45 GLTNSNYPELTKLYEQYKDKGLEILAFPCNQFGNQEPGDNEQIMEFACTRFKAEFPIFDKVDVNGSNAAPVYKYLKSSKGGLFGDGIKWNFTKFLVDRDGKVVDRYAP 152          
BLAST of DY305566 vs. ExPASy Swiss-Prot
Match: GPX4_NICSY (Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 4.919e-41
Identity = 80/111 (72.07%), Postives = 90/111 (81.08%), Query Frame = 1
Query:  520 GLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSSSWWIGKGKVLNVMPPPQT 852
            GLTNSNYT+L+++Y KYK+QGLEILAFPCNQFG QEPG  E+IQ   CTRFKAE+PIFDKVDVNGDNAAPLYK LKSSKGG FGDSIKWNFS      +G V++   P  T
Sbjct:   44 GLTNSNYTDLTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTT 154          
BLAST of DY305566 vs. ExPASy Swiss-Prot
Match: GPX4_TOBAC (Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 8.390e-41
Identity = 79/111 (71.17%), Postives = 90/111 (81.08%), Query Frame = 1
Query:  520 GLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSSSWWIGKGKVLNVMPPPQT 852
            GLTNSNYT+++++Y KYK+QGLEILAFPCNQFG QEPG  E+IQ   CTRFKAE+PIFDKVDVNGDNAAPLYK LKSSKGG FGDSIKWNFS      +G V++   P  T
Sbjct:   44 GLTNSNYTDMTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTT 154          
BLAST of DY305566 vs. ExPASy Swiss-Prot
Match: GPX6_ARATH (Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial OS=Arabidopsis thaliana GN=GPX6 PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 1.431e-40
Identity = 79/108 (73.15%), Postives = 88/108 (81.48%), Query Frame = 1
Query:  520 GLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSSSWWIGKGKVLNVMPP 843
            GLTNSNYTEL+QLY+KYK  G EILAFPCNQFG QEPG NE+I +FACTRFKAE+PIFDKVDVNGD AAP+YK LKSSKGGLFGD IKWNF+       G V++   P
Sbjct:  106 GLTNSNYTELAQLYEKYKGHGFEILAFPCNQFGNQEPGTNEEIVQFACTRFKAEYPIFDKVDVNGDKAAPVYKFLKSSKGGLFGDGIKWNFAKFLVDKDGNVVDRFAP 213          

HSP 2 Score: 68.9366 bits (167), Expect = 6.927e-11
Identity = 35/47 (74.47%), Postives = 43/47 (91.49%), Query Frame = 2
Query:  134 SRSDHTMASQSKT-SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQ 271
            SRS+H+MA+ S+  S++DF+VKDAKG DVDLSIYKGK+LLIVNVASQ
Sbjct:   58 SRSEHSMAASSEPKSLYDFTVKDAKGNDVDLSIYKGKVLLIVNVASQ 104          
BLAST of DY305566 vs. ExPASy Swiss-Prot
Match: GPX7_ARATH (Putative glutathione peroxidase 7, chloroplastic OS=Arabidopsis thaliana GN=GPX7 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 2.441e-40
Identity = 78/110 (70.91%), Postives = 88/110 (80.00%), Query Frame = 1
Query:  514 RSGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSSSWWIGKGKVLNVMPP 843
            R GLT+SNY+ELSQLY+KYKNQG EILAFPCNQFG QEPG N +I++FACTRFKAEFPIFDKVDVNG + AP+YK LKS+ GG  GD IKWNF       KGKV+   PP
Sbjct:  107 RCGLTSSNYSELSQLYEKYKNQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGPSTAPIYKFLKSNAGGFLGDIIKWNFEKFLVDKKGKVVERYPP 216          
BLAST of DY305566 vs. ExPASy Swiss-Prot
Match: GPX4_SPIOL (Probable phospholipid hydroperoxide glutathione peroxidase OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 5.438e-40
Identity = 76/108 (70.37%), Postives = 89/108 (82.41%), Query Frame = 1
Query:  520 GLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSSSWWIGKGKVLNVMPP 843
            GLTNSNYTE+++LY+KY+  GLEILAFPCNQFG QEPG NE++ EFACTRFKAE+PIFDKVDVNG NAAP+YK LKSSKGGLFGD +KWNF+       G V++   P
Sbjct:   45 GLTNSNYTEMTELYEKYRELGLEILAFPCNQFGNQEPGSNEEVLEFACTRFKAEYPIFDKVDVNGSNAAPIYKFLKSSKGGLFGDGLKWNFTKFLVDKDGNVVDRYAP 152          
BLAST of DY305566 vs. ExPASy Swiss-Prot
Match: GPX4_SOLLC (Probable phospholipid hydroperoxide glutathione peroxidase OS=Solanum lycopersicum GN=GPXle-1 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 7.103e-40
Identity = 77/108 (71.30%), Postives = 89/108 (82.41%), Query Frame = 1
Query:  520 GLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSSSWWIGKGKVLNVMPP 843
            GLTNSNYT++++LY KYK+QGLEILAFPCNQFG QEPG+ E IQ+  CTRFKAE+PIFDKVDVNGDNAAPLY+ LKSSKGG FGD IKWNFS      +G V++   P
Sbjct:   44 GLTNSNYTDMTELYKKYKDQGLEILAFPCNQFGGQEPGNIEDIQQMVCTRFKAEYPIFDKVDVNGDNAAPLYRFLKSSKGGFFGDGIKWNFSKFLIDKEGHVVDRYSP 151          
BLAST of DY305566 vs. ExPASy Swiss-Prot
Match: GPX4_GOSHI (Probable phospholipid hydroperoxide glutathione peroxidase OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 9.276e-40
Identity = 80/112 (71.43%), Postives = 89/112 (79.46%), Query Frame = 1
Query:  520 GLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD-NEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSSSWWIGKGKVLNVMPPPQT 852
            GLTNSNYT+L+++Y KYK+QGLEILAFPCNQFG QEPG   E IQ   CTRFKAE+PIFDKVDVNGDNAAPLYK LKSSKGG FGDSIKWNFS      +G V++   P  T
Sbjct:   44 GLTNSNYTDLTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEESIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTT 155          
BLAST of DY305566 vs. ExPASy Swiss-Prot
Match: GPX1_PEA (Phospholipid hydroperoxide glutathione peroxidase, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.026e-38
Identity = 74/110 (67.27%), Postives = 87/110 (79.09%), Query Frame = 1
Query:  514 RSGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSSSWWIGKGKVLNVMPP 843
            R GLT+SNYTELS LY+ +KN+GLE+LAFPCNQFG QEPG NE+I++FACT+FKAEFPIFDKVDVNG   AP+Y+ LKSS GG FGD +KWNF        GKV+   PP
Sbjct:  110 RCGLTSSNYTELSHLYENFKNKGLEVLAFPCNQFGMQEPGSNEEIKQFACTKFKAEFPIFDKVDVNGPFTAPVYQFLKSSSGGFFGDIVKWNFEKFLVDKNGKVVERYPP 219          
The following BLAST results are available for this feature:
BLAST of DY305566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
GPX4_CITSI2.203e-4987.96Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_MESCR1.529e-4275.93Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_NICSY4.919e-4172.07Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_TOBAC8.390e-4171.17Probable phospholipid hydroperoxide glutathione pe... [more]
GPX6_ARATH1.431e-4073.15Probable phospholipid hydroperoxide glutathione pe... [more]
GPX7_ARATH2.441e-4070.91Putative glutathione peroxidase 7, chloroplastic O... [more]
GPX4_SPIOL5.438e-4070.37Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_SOLLC7.103e-4071.30Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_GOSHI9.276e-4071.43Probable phospholipid hydroperoxide glutathione pe... [more]
GPX1_PEA1.026e-3867.27Phospholipid hydroperoxide glutathione peroxidase,... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1BH05RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305566 ID=DY305566; Name=DY305566; organism=Citrus sinensis; type=EST; length=1246bp
GCTTAAACGAAATCTCGGAATCGCAACTTCCCTTATTTTGACAAGACATT
TCACTTCGAATTGTAAGCAAACCCTGTTGAGACCTTCGAAAAGTAATCCA
ATTTCTTTGGTTTCAAGGCCTTGTTTCTTCGCTTCTAGATCGGATCATAC
AATGGCAAGCCAATCGAAAACTTCAGTTCACGATTTCAGTGTTAAGGACG
CCAAGGGACAGGATGTTGATCTGAGCATCTACAAGGGAAAGCTTCTTTTG
ATTGTCAATGTTGCATCACAGTGGTATGCCTCAGCTCCTTTCATTTTTTA
CTTTTTTTTTTTTTTAAGTAATGATTCATTGATTATTGTTGATGCTTCCA
TTTAATTAACGCTAATACTCAGAAGCATGCATGCTTTCAATACAAATAAG
CATTTGTAGGAGATGATTTCACCCGGAGACTCTTTAATTCTTGCGCAGTG
CCGGCGACAGTTTTTTTTATTTTTTTTTCCTTTATCCGTTTTATTCATTT
ACCTGATTTTGAACGCAGTGGCTTGACCAATTCAAACTACACTGAGCTGA
GTCAGTTGTACGACAAGTACAAGAATCAAGGCTTGGAGATTCTGGCCTTT
CCTTGTAATCAGTTTGGAGCTCAAGAGCCAGGAGACAATGAACAGATTCA
AGAATTTGCATGCACTCGCTTTAAGGCTGAGTTTCCCATATTTGATAAGG
TTGATGTTAATGGTGATAATGCTGCTCCTTTATACAAGCATCTGAAATCC
AGCAAAGGTGGACTTTTTGGAGACAGCATCAAGTGGAACTTTTCCAGTTC
TTGGTGGATAGGGAAGGGAAAGGTGTTGAACGTTATGCCCCCCCCCCAAA
CCTCTGAACATTGAGGTAGTATAAAGATGTTTGGCTGGTAGTGGCGGTTG
CCCTTTCAATTTTAAGGAAAACTGGACGGTGGGTCTCATTTTATTCCTAA
AAAACTTATTTGGTTATTGGTTGTTACCCCCCTGCCGAAAGGAAAAAAAA
AACTTCCGGGAAACGGCTTAACCGCGGCTCCAACTTGCAGGGATCACCTT
CTTGTCAAAAAACAAAAAAAATCAGGCGGATAAAACCCCTCGGGGGGGGA
AAATTTGGTTTTAACTTTTGCCCCAAATTCGGAAAACCATTAAAGAAAAT
TTTCCCAAAAGCTGCAAAACAAATTTTCAGTGTGAAAAGTGGGCGTGGGT
TTGTTGTGGTTAGTAGGAGGATTGTCCCCCAAAATTTTTTAGTAGA
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