DY305553

Overview
NameDY305553
Unique NameDY305553
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1076
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305553_ssr891 microsatellite DY305553_ssr891:891..900. BLAST: Citrus ESTs to Prunus persica proteins V1
DY305553_ssr355 microsatellite DY305553_ssr355:355..366. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6945 contig Csv1_Contig6945:387..1462. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY305553 vs. ExPASy Swiss-Prot
Match: Y5986_ARATH (Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 5.284e-33
Identity = 75/164 (45.73%), Postives = 101/164 (61.59%), Query Frame = 1
Query:  397 QRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGG--GGQSKLTLPRVFIGGRYIGGVEEVRQLNETGELKKFVEGLPAAERG------VCNICGGYSFVLCGECDGSHKVYAE--------KGGGFKSCNACNENGLIKCPSC 840
            +RVV+YFTSLR +R T+EDC  +R IL+   +++DERD+SM S F +EL+ +L G       +TLPRVF+G +Y+GGVEE+++LNE GEL+K ++     E G       C  CG   FV C  C GS K+Y E           GF+ C  CNENGLI+C  C
Sbjct:  225 ERVVLYFTSLRGIRKTYEDCCNIRIILKSLGIRIDERDVSMHSGFKDELKKLLEGKFNNGVGITLPRVFLGNKYLGGVEEIKKLNENGELEKLIKDCEMVEDGSPGFGNECEACGDVRFVPCETCSGSCKLYHEGEEEDEGVTEYGFQRCPYCNENGLIRCHVC 388          
BLAST of DY305553 vs. ExPASy Swiss-Prot
Match: Y3885_ARATH (Uncharacterized protein At3g28850 OS=Arabidopsis thaliana GN=At3g28850 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 4.945e-31
Identity = 77/179 (43.02%), Postives = 103/179 (57.54%), Query Frame = 1
Query:  397 QRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILG-----GGGQSKLTLPRVFIGGRYIGGVEEVRQLNETGELKKFVEGLPAAERG------VCNICGGYSFVLCGECDGSHKVY--------------------AEKGGGFKSCNACNENGLIKCPSC 840
            +RV++YFTSLR +R T+E+   VR IL+   +++DERD+SM S F +EL+ +LG     G G   +TLPRVF+G +YIGG EE+R+LNE G+L+K + G    E         C  CG   FV C  C GS KVY                     E+  GF++C  CNENGLI+CP C
Sbjct:  251 ERVILYFTSLRGIRKTYEESCDVRVILKSLGIRVDERDVSMHSGFKDELKELLGEKFNKGVG---ITLPRVFLGRKYIGGAEEIRKLNEDGKLEKLLGGCERVEENQNGNGLECEACGDVRFVPCETCSGSCKVYYEYEDDDDDDDEGDDDESVKEEREYGFQTCPDCNENGLIRCPVC 426          
BLAST of DY305553 vs. ExPASy Swiss-Prot
Match: GRCR1_MOUSE (Glutaredoxin domain-containing cysteine-rich protein 1 OS=Mus musculus GN=Grxcr1 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.104e-22
Identity = 61/161 (37.89%), Postives = 92/161 (57.14%), Query Frame = 1
Query:  385 PGAD---QRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQLNETGELKKFVEGLPAAER-GVCNICGGYSFVLCGECDGSHKVYAEK--GGGFKS--CNACNENGLIKCPSCS 843
            P AD    RVV+Y T LRVVR+TFE C+ VR I +  RV+ +E++++++  +  EL        ++  +LP VFI G Y+GG E++  +NE+GEL+  +  +   +    C  CGG+ F+ C  C GS            FK+  C ACNENGL +C +C+
Sbjct:  130 PSADLEFDRVVIYTTCLRVVRTTFERCELVRKIFQNHRVKFEEKNIALNGDYGKELDERCRRVSEAP-SLPVVFIDGHYLGGAEKILSMNESGELQDLLTKIERVQHPHECPSCGGFGFLPCSVCHGSKMSVFRNCFTDAFKALKCTACNENGLQRCKNCT 289          
BLAST of DY305553 vs. ExPASy Swiss-Prot
Match: GRCR1_HUMAN (Glutaredoxin domain-containing cysteine-rich protein 1 OS=Homo sapiens GN=GRXCR1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.460e-22
Identity = 57/154 (37.01%), Postives = 89/154 (57.79%), Query Frame = 1
Query:  400 RVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQLNETGELKKFVEGLPAAER-GVCNICGGYSFVLCGECDGS-----HKVYAEKGGGFKSCNACNENGLIKCPSCS 843
            RVV+Y T LRVVR+TFE C+ VR I +  RV+ +E++++++  +  EL        ++  +LP VFI G Y+GG E++  +NE+GEL+  +  +   +    C  CGG+ F+ C  C GS        + +     K C ACNENGL +C +C+
Sbjct:  138 RVVIYTTCLRVVRTTFERCELVRKIFQNHRVKFEEKNIALNGEYGKELDERCRRVSEAP-SLPVVFIDGHYLGGAEKILSMNESGELQDILTKIERVQHPHECPSCGGFGFLPCSVCHGSKMSMFRNCFTDSFKALK-CTACNENGLQRCKNCA 289          
BLAST of DY305553 vs. ExPASy Swiss-Prot
Match: GRCR1_DROME (Glutaredoxin domain-containing cysteine-rich protein CG31559 OS=Drosophila melanogaster GN=CG31559 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.263e-18
Identity = 49/152 (32.24%), Postives = 87/152 (57.24%), Query Frame = 1
Query:  400 RVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQLNETGELKKFVEGLPA-AERGVCNICGGYSFVLCGECDGS----HKVYAEKGGGFKSCNACNENGLIKCPSC 840
            +VV+Y TS+ ++R T+  C  V+ ILR   V+ +ERD+ M   +  E++  +  G   ++ +P++++ G++IG  E V ++NE+GEL++ ++   + A    C  CGGY  + C  C+GS    H+ +         C  C+E GL+KC +C
Sbjct:  306 KVVLYTTSMGIIRETYTKCANVKQILRTLLVKFEERDVFMSVEYQAEMRQRMQSG---QVRVPQLYVEGQHIGDAETVERMNESGELRQLLKPYKSMASTYTCQTCGGYRLLPCPSCNGSKKSVHRNHFTAEFVALKCMNCDEVGLVKCHNC 454          
BLAST of DY305553 vs. ExPASy Swiss-Prot
Match: GRCR2_DROME (Glutaredoxin domain-containing cysteine-rich protein CG12206 OS=Drosophila melanogaster GN=CG12206 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.815e-18
Identity = 50/152 (32.89%), Postives = 83/152 (54.61%), Query Frame = 1
Query:  400 RVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQLNETGELKKFVEGLPA-AERGVCNICGGYSFVLCGECDGS----HKVYAEKGGGFKSCNACNENGLIKCPSC 840
            +VV+Y TS+ ++R T+  C  V+ ILR   ++ +ERD+ M   +  E++  +       + +P++F+ G+ IG    V +LNE+GEL++ +    + A    C  CGGY  + C  C+GS    H+ +         C  C+E GLIKCP+C
Sbjct:  434 KVVLYTTSMGIIRDTYAKCANVKKILRTLLIKFEERDIFMSVEYQQEMRERM---QDETIRVPQLFVEGQLIGDANIVERLNESGELRQLLRPYKSIATAYTCQTCGGYRMLPCPACNGSKKSMHRNHFTAEFVALKCMNCDEVGLIKCPNC 582          
The following BLAST results are available for this feature:
BLAST of DY305553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
Y5986_ARATH5.284e-3345.73Uncharacterized protein At5g39865 OS=Arabidopsis t... [more]
Y3885_ARATH4.945e-3143.02Uncharacterized protein At3g28850 OS=Arabidopsis t... [more]
GRCR1_MOUSE1.104e-2237.89Glutaredoxin domain-containing cysteine-rich prote... [more]
GRCR1_HUMAN2.460e-2237.01Glutaredoxin domain-containing cysteine-rich prote... [more]
GRCR1_DROME1.263e-1832.24Glutaredoxin domain-containing cysteine-rich prote... [more]
GRCR2_DROME2.815e-1832.89Glutaredoxin domain-containing cysteine-rich prote... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM1BF09RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305553 ID=DY305553; Name=DY305553; organism=Citrus sinensis; type=EST; length=1076bp
GCTTCATTCTTCCTGTACAATTGCTCTTTACAAACCCAGGAAAAAATAAT
CAAATCAATGTGGCGGTCGTATATTACATCACCGGTTAAAATTCACAGCA
CGTCATCACATTCACATTCGTCATTCCACTGCTCGTCCTTCAAAGATATC
CAGAGCCTCTGTACAGACGATCCCACCCCCCTTCACAATAACAATAACAA
CAATAATACATCGAGAAAGCCCTCTGTTTTCCACCGGGCCCGAATCGTCC
ACGCCTTTATCCGCTCCTTGAAACCCGAAAGTGAATCCCCATTTAAACGC
GAGCCCAAAAATGAGACGTCGGCAGACGAAAATAACAAATATTCGCTACA
AGTTCAGCAGCAGCAGCAACCGACGATCAGGATCCCGGGAGCGGACCAAC
GCGTTGTCGTATACTTCACGAGCCTGCGAGTCGTACGGTCGACCTTCGAA
GACTGCAAGGCCGTCCGATCTATTCTCCGTGGATTTCGCGTGCAACTCGA
CGAGCGGGATCTTTCCATGGACTCGAGTTTCTTGAACGAGTTACAAGGAA
TCCTCGGCGGCGGTGGTCAAAGCAAGTTGACTCTGCCTAGGGTTTTTATC
GGCGGCAGGTACATCGGTGGAGTGGAGGAAGTCAGGCAACTTAACGAGAC
CGGCGAGCTGAAGAAGTTCGTCGAAGGGTTGCCGGCGGCGGAGCGCGGCG
TGTGTAACATATGCGGCGGTTATAGTTTCGTTTTGTGCGGCGAATGCGAC
GGTAGCCATAAGGTTTACGCCGAAAAAGGCGGCGGCTTTAAGTCGTGTAA
TGCCTGTAACGAAAACGGACTCATCAAGTGCCCCTCGTGTTCTTACCCCG
CATTTTTAAACCGTCTGATTTATAGAATTTAAAAACCAAAATATATATAT
TATTTTAATATTATATTATTTTGGCCTTTCCGGGTGTTTTAATAATATAG
GGAATAATAAAATTTTATTTTTTTTGGGAATTTTGTTTTTTGGGGGAAAA
TCAGGTGGTTGTATAAAAAAAACAAAACACACTCGATTTTTTTGCTTTAA
ATATTTGTAAAAATCCCTTTGGCCCC
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