EY702570

Overview
NameEY702570
Unique NameEY702570
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length959
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702570 vs. ExPASy Swiss-Prot
Match: PAP_CITUN (Plastid-lipid-associated protein, chloroplastic OS=Citrus unshiu GN=PAP PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 6.008e-46
Identity = 104/173 (60.12%), Postives = 115/173 (66.47%), Query Frame = 1
Query:  142 MASISQTNQFPCKTLSRNRADNQFTSKPSILPLNSVRISRSLPNKSFLSIQGFTPARPLVLTRAADDDEWRPHNDNDQRGPLAAAQDASREEVTEIDNSNKALADSFYGTDRGLNAPTDTTAHTSPLIXXXXXXXXXXXXXRR*LC*MPTRIPAHPSASRSFPLVARANFVLA 660
            MASISQTNQFPCKTLS+N   NQFTSKPSILPLNSVRISRSL  KSFLSIQGFT ARPLVLTRAADDDEW P  + +  G LA A++ S +EVTEIDN  KAL DSFYGTDRGLNA ++T A    LI                       I  + S S  FPL++R    LA
Sbjct:    1 MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAADDDEWGPEKEKEGGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLA 173          
BLAST of EY702570 vs. ExPASy Swiss-Prot
Match: LIPC_SOLDE (Light-induced protein, chloroplastic OS=Solanum demissum PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.705e-16
Identity = 59/175 (33.71%), Postives = 85/175 (48.57%), Query Frame = 1
Query:  142 MASISQTNQFPCKTLSRNRADNQFTSKPSILPLNSVRISRSLPNKSFLSIQGFTPARPLVLTRAAD---DDEWRPHNDNDQRGPLAAAQDASREEVTEIDNSNKALADSFYGTDRGLNAPTDTTAHTSPLIXXXXXXXXXXXXXRR*LC*MPTRIPAHPSASRSFPLVARANFVL 657
            MASIS  NQ PCKTL      ++ TSK S LP++S            +S++ FT  +P    +A +   +DEW P  +  + G +A  ++   +E +EI+   K LADS YGT+RGL+A ++T A    LI                       I A+ S S  FPL++R N  L
Sbjct:    1 MASISSLNQIPCKTLQITSQYSKPTSKISTLPISSTNFLSKTEQHRSISVKEFTNPKPKFTAQATNYDKEDEWGPEVEQIRPGGVAVVEEEPPKEPSEIELLKKQLADSLYGTNRGLSASSETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTSFSGLFPLLSRGNLPL 175          
BLAST of EY702570 vs. ExPASy Swiss-Prot
Match: CHRC_CUCSA (Chromoplast-specific carotenoid-associated protein, chromoplast OS=Cucumis sativus GN=CHRC PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.227e-16
Identity = 56/134 (41.79%), Postives = 71/134 (52.99%), Query Frame = 1
Query:  142 MASISQTNQFPCKTLSRNRADNQFTSKPSILPLNSV-RISRSLPNKSFLSIQGFTPARPLVLTRAA-DDDEWRPHND----NDQRGPLAAAQDASREEVTEIDNSNKALADSFYGTDRGLNAPTDTTAHTSPLI 525
            MA +SQ NQ PCKTL+ N    Q TSKPS+ P+ S+   +R+   KS +S+      RP    RA  +DDEW    D    +D    +A  ++    E +EI    KAL DSFYGTDRGL    DT A    LI
Sbjct:    1 MAFVSQFNQLPCKTLALNPPQPQLTSKPSVFPIASIGATARAAAGKSLISV------RPAFKVRAVLNDDEWGEDKDEKYGDDSSVAVAEKEEEKPLEPSEIYKLKKALVDSFYGTDRGLRVSRDTRAEIVELI 128          
BLAST of EY702570 vs. ExPASy Swiss-Prot
Match: LIPC_SOLTU (Light-induced protein, chloroplastic OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.908e-16
Identity = 59/175 (33.71%), Postives = 85/175 (48.57%), Query Frame = 1
Query:  142 MASISQTNQFPCKTLSRNRADNQFTSKPSILPLNSVRISRSLPNKSFLSIQGFTPARPLVLTRAAD---DDEWRPHNDNDQRGPLAAAQDASREEVTEIDNSNKALADSFYGTDRGLNAPTDTTAHTSPLIXXXXXXXXXXXXXRR*LC*MPTRIPAHPSASRSFPLVARANFVL 657
            MASIS  NQ PCKTL      ++ TSK S LP++S            +S++ FT  +P    +A +   +DEW P  +  + G +A  ++   +E +EI+   K LADS YGT+RGL+A ++T A    LI                       I A+ S S  FPL++R N  L
Sbjct:    1 MASISSLNQIPCKTLQITSQYSKPTSKISTLPISSTNFPSKTELHRSISVKEFTNPKPKFTAQATNYDKEDEWGPEVEQIRPGGVAVVEEEPPKEPSEIELLKKQLADSLYGTNRGLSASSETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTSFSGLFPLLSRGNLPL 175          
BLAST of EY702570 vs. ExPASy Swiss-Prot
Match: PAP1_ARATH (Probable plastid-lipid-associated protein 1, chloroplastic OS=Arabidopsis thaliana GN=PAP1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.651e-11
Identity = 49/134 (36.57%), Postives = 69/134 (51.49%), Query Frame = 1
Query:  142 MASISQTNQFPCKTLSRNRADNQFTSK-PSILPLNSVRISRSLPNKSFLSIQGFTPARPLVLTRAAD-DDEWRPHNDNDQR----GPLAAAQDASREEVTEIDNSNKALADSFYGTDRGLNAPTDTTAHTSPLI 525
            MA++    QFPCKTL+ + ++ +  SK P +LP+NS+     +         G +  RP    RA D DDEW    D  +R        +  D + E V E +   ++LADS YGTDRGL+  +DT A  S LI
Sbjct:    1 MATVPLFTQFPCKTLNPSSSNTKHQSKSPILLPINSINRRSEI---------GVSVHRPDFKIRATDIDDEWG--QDGVERVFASSSTVSVADKAIESVEETERLKRSLADSLYGTDRGLSVSSDTRAEISELI 123          
The following BLAST results are available for this feature:
BLAST of EY702570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PAP_CITUN6.008e-4660.12Plastid-lipid-associated protein, chloroplastic OS... [more]
LIPC_SOLDE1.705e-1633.71Light-induced protein, chloroplastic OS=Solanum de... [more]
CHRC_CUCSA2.227e-1641.79Chromoplast-specific carotenoid-associated protein... [more]
LIPC_SOLTU2.908e-1633.71Light-induced protein, chloroplastic OS=Solanum tu... [more]
PAP1_ARATH1.651e-1136.57Probable plastid-lipid-associated protein 1, chlor... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-009-E11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702570 ID=EY702570; Name=EY702570; organism=Citrus sinensis; type=EST; length=959bp
GNNNGGNNAAGCTTTTTTTTTCCACTTTACCCTCCCNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTTCTACTTCCTCTGTCGGCG
AAAACTGTGTGTGTTGTAACTGTGTGTTTTTGGAAAAGCTAATGGCTTCA
ATATCTCAAACCAACCAGTTCCCGTGCAAGACTCTTTCACGGAACCGGGC
AGACAATCAGTTCACCTCGAAGCCTTCAATTCTTCCTTTGAACTCGGTTC
GAATTTCACGGAGTCTCCCCAACAAATCATTTCTTTCCATTCAAGGATTC
ACTCCGGCCAGGCCGCTGGTTCTAACTCGGGCTGCCGATGATGACGAGTG
GCGCCCCCACAACGACAACGACCAACGTGGCCCTCTGGCGGCGGCACAGG
ACGCGAGCCGAGAGGAAGTTACAGAGATTGATAATTCCAACAAAGCCCTT
GCGGATTCCTTTTATGGCACCGATCGCGGATTGAATGCCCCCACCGACAC
TACGGCTCACACCTCTCCACTTATTACCCCGCCTTCGGCCCAGCAATCAA
CCCCGGCTCCCCCCCGGCGGTAACTCTGTTAAATGCCCACACGGATCCCT
GCGCACCCATCCGCTTCCCGTTCGTTTCCCCTGGTCGCAAGGGCGAACTT
TGTCTTGGCCACGCGCGGACGCCATCTCCCCCACCCTCGCCCCAGAGAAC
TTCCCGCGCCACAACCCCATCCCCGTTCCTGGGGCCACCGCCTCACCCCT
TTCATTCCTACCATCGCCCCCCTCGACGGCCGCCCCCCATCGCCTGCCTC
ATCCAACCCCAGGAACGGCTCCTCGGCCCCCCCCTCGCGAACCGATCCCC
ATCCACACCGCAAACATGCCCACCCCCCCCCCCCAGTCGCATCGCCCCCC
TCCTCACGCACTACCTCCTCTCTCCCCACCCCCCTTCTCTTTTTAAACCA
ACCCCTCCC
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