DY305544

Overview
NameDY305544
Unique NameDY305544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1166
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305544_ssr1110 microsatellite DY305544_ssr1110:1110..1121. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of DY305544 vs. ExPASy Swiss-Prot
Match: CV013_MOUSE (Uncharacterized protein C22orf13 homolog OS=Mus musculus PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 2.180e-11
Identity = 49/173 (28.32%), Postives = 89/173 (51.45%), Query Frame = -3 
Query:  352 TVDLAYLLQKI*FGFSYFPITIGANPIYFVETFFKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSG---------YTGHYIVICGYDADSDEFEIRDPASCRKHEKVTSKCLEEARKSFGTDEDFFLIFLE 843
            T+DLAYL++       +   T+G +  Y  ++F+++   T+  RV+ LF +A++  +++E  ++S  +I + +  G ++AI LV+   L H  +    V     + SG         Y GH+IV+ GY+  +      +PA   +    +    EEAR S+GTDED   ++L+
Sbjct:   68 TIDLAYLMRHFGVRHRFCTQTLGVDKGYKNQSFYRKHFDTEETRVNQLFAQAKACKVQVEKCTVSVQDIQVHLAQG-HVAIVLVNSGVL-HCDLCSSPVKYCCFTPSGHRCFCRTPDYQGHFIVLRGYNRATGCIFYNNPAYADRMCSTSISNFEEARTSYGTDEDILFVYLD 238
The following BLAST results are available for this feature:
BLAST of DY305544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CV013_MOUSE2.180e-1128.32Uncharacterized protein C22orf13 homolog OS=Mus mu... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM1BE06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305544 ID=DY305544; Name=DY305544; organism=Citrus sinensis; type=EST; length=1166bp
GAAAATAATCAATCTTTAACTCATTTAAATGAAATCATACAACTGAGTTT
TAAAAATTTGCTTAATGACAGCAAAATACAACTGCCCCTTCATTGATGGG
CAAAAAAATACACAATTACTTGTATAATAATTTATAAAAATTATGTGTTA
AATATACATTTAAAGTAAGCTGAATACTTACAAGCAACTGCTAGCAATCT
GAAGGAAAAAGCCACATTAACCTGGTTAATGCTGAAGCAAATACTATATA
TTGTTTTGTCATATATGCAAAGCATAATGCAATATACATGTAGGGGGTCA
AATTCAAGTGTAAAAATTTATACAAAGGAATTGGATCTACTTCTCGGTCT
TCTCCAGAAATATCAAAAAAAAATCTTCGTCAGTACCAAAAGATTTCCGG
GCTTCTTCTAGGCACTTCGATGTGACCTTCTCATGTTTCCTACAACTGGC
AGGATCTCTGATTTCAAACTCATCTGAGTCGGCATCATAGCCACATATCA
CAATATAGTGACCAGTATAGCCAGAGTCACTGCCATAAAAGCCTGGGACA
ATGACATCCTCCATCCATGAGTGACTTAATTTGTACTGATCAACTAATGC
AATTGCAATATAATTCCCTGACAATATCATGAGAGAGATTTCTACTCCAC
TGATTGATCCGCACTCTATTTTAATTCCAGCACTTCTTGCCTTCTGGAAT
AGCATATCCACTCGTACCAAATCAGTAGGCAATTGCTCCTTGAAAAACGT
CTCAACAAAGTAAATTGGGTTTGCTCCTATTGTTATTGGGAAATAAGAAA
AACCAAATTAAATTTTCTGCAGTAAATACGCCAAATCAACGGTCCCAAAG
CCAGTCCGGGAGAATTGTTCCGCCAACCCTTGAATATGGGAATGGTGATT
TCAATTGGTTCCCATTTACCACAAACACCATGCCCAAAACACAATCCCAA
AAAAAAAACTTAAATTAGGGTGGGGGAATTCCAAAAAGGGGGGGAAAGGG
GAAAAATGAAAACCCCCCATTTCCAAAACCCTTGGGGGGAGGGATTGAAG
GGGGCGACCATCCCCCCAGGGTTTGCGCCCCTTTCAAAATAAAAAAATTT
GATTTTTTCTTCTTTCTTTCTTTTTTTCCCTTTTTCCTCTCCCTTTTAAA
AAAATATTTGTGTTTA
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