DY305539

Overview
NameDY305539
Unique NameDY305539
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1253
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6673 contig Csv1_Contig6673:1..1254. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY305539 vs. ExPASy Swiss-Prot
Match: RFA2_SCHPO (Replication factor A protein 2 OS=Schizosaccharomyces pombe GN=ssb2 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.358e-14
Identity = 63/232 (27.16%), Postives = 106/232 (45.69%), Query Frame = 3
Query:  132 LLPMTVKQXXXXXXXXXXXXX-IDGADVNTITVVGIVCDMQDKEPQFIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVRVYGHLKAFQDKRSLNAYSLRPIIDFNEITSHFVECIYVQLYNTR------------------LRY----SFDEGKSIDQMVLDFLRRPEFLA----------NNNGVHRNVISQQLNLPMDKLMEALESLNKNSLVY-SIDEFHYKSAV 725
            L P+T+KQ              IDG +V  +T VG++ ++  +     + I+DGTG IE   W H     + +++++   YVRVYG++K F  K  + +  +R I D NE+  HF+E I V L+ T+                  L Y    S     S++Q + ++   P  +            N GVH   ++Q +   +D L    + L +  ++Y +IDE H+KS +
Sbjct:   50 LRPVTIKQILNASQVHADAEFKIDGVEVGQVTFVGVLRNIHAQTTNTTYQIEDGTGMIEVRHWEH----IDALSELATDTYVRVYGNIKIFSGKIYIASQYIRTIKDHNEVHFHFLEAIAVHLHFTQKANAVNGANAPGYGTSNALGYNNISSNGAANSLEQKLAEYSLTPAQMTVMQAIHSAPETNEGVHVRQLAQSVGPGID-LTAVTDFLQQEGIIYTTIDENHFKSVL 276          
BLAST of DY305539 vs. ExPASy Swiss-Prot
Match: RFA2_RAT (Replication protein A 32 kDa subunit OS=Rattus norvegicus GN=Rpa2 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 8.239e-12
Identity = 57/243 (23.46%), Postives = 108/243 (44.44%), Query Frame = 3
Query:   87 PDPSSSFSKNR-NVRTLLPMTVKQXXXXXXXXXXXXXIDGADVNTITVVGIVCDMQDKEPQFIFLIDDGTGR-IECSRWAHEQMEFNEVNQISKGMYVRVYGHLKAFQDKRSLNAYSLRPIIDFNEITSHFVECIYVQLYNTRLRYSFDEGKS--------------------------IDQMVLDFLR---RPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNKNSLVYS-IDEFHYKS 719
            P PS +  K+R   + ++P T+ Q             I   +++ +T+VGI+   +      ++ IDD T   ++  +W        E   +    YV+V GHL++FQ+K+SL A+ + P+ D NE T+H +E +   L  ++       G+                           +   VL+ ++   RPE L       +++ SQ  ++P+  + +A++ L     +YS +D+ H+KS
Sbjct:   30 PTPSQAEKKSRARAQHIVPCTISQLLSATLTDEVFK-IGDVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSGENTVVPPETYVKVAGHLRSFQNKKSLVAFKIIPLEDMNEFTAHILEVVNSHLMLSKANSQASVGRPSMSNPGMGEPGNFSGNNFMPANGLTVVQNQVLNLIKACPRPEGLN-----FQDLRSQLQHMPVASIKQAVDFLCNEGHIYSTVDDDHFKS 266          
BLAST of DY305539 vs. ExPASy Swiss-Prot
Match: RFA2_PONAB (Replication protein A 32 kDa subunit OS=Pongo abelii GN=RPA2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.397e-11
Identity = 55/243 (22.63%), Postives = 109/243 (44.86%), Query Frame = 3
Query:   87 PDPSSSFSKNR-NVRTLLPMTVKQXXXXXXXXXXXXXIDGADVNTITVVGIVCDMQDKEPQFIFLIDDGTGR-IECSRWAHEQMEFNEVNQISKGMYVRVYGHLKAFQDKRSLNAYSLRPIIDFNEITSHFVECIYVQLYNTRLRYSFDEGKS--------------------------IDQMVLDFLR---RPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNKNSLVYS-IDEFHYKS 719
            P PS +  K+R   + ++P T+ Q             I   +++ +T+VGI+   +      ++ IDD T   ++  +W       +E   +    YV+V GHL++FQ+K+SL A+ + P+ D NE T+H +E I   +  ++       G++                              VL+ ++   RPE L       +++ +Q  ++ +  + +A++ L+    +YS +D+ H+KS
Sbjct:   30 PAPSQAEKKSRARAQHIVPCTISQLLSATLVDEVFR-IGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDASSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKANSQPSAGRAPISNPGMSEAGNFGGNSFMPANGLTVAQNQVLNLIKACPRPEGLN-----FQDLKNQLKHMSVSSVKQAMDFLSNEGHIYSTVDDDHFKS 266          
BLAST of DY305539 vs. ExPASy Swiss-Prot
Match: RFA2_HUMAN (Replication protein A 32 kDa subunit OS=Homo sapiens GN=RPA2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.397e-11
Identity = 55/243 (22.63%), Postives = 109/243 (44.86%), Query Frame = 3
Query:   87 PDPSSSFSKNR-NVRTLLPMTVKQXXXXXXXXXXXXXIDGADVNTITVVGIVCDMQDKEPQFIFLIDDGTGR-IECSRWAHEQMEFNEVNQISKGMYVRVYGHLKAFQDKRSLNAYSLRPIIDFNEITSHFVECIYVQLYNTRLRYSFDEGKS--------------------------IDQMVLDFLR---RPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNKNSLVYS-IDEFHYKS 719
            P PS +  K+R   + ++P T+ Q             I   +++ +T+VGI+   +      ++ IDD T   ++  +W       +E   +    YV+V GHL++FQ+K+SL A+ + P+ D NE T+H +E I   +  ++       G++                              VL+ ++   RPE L       +++ +Q  ++ +  + +A++ L+    +YS +D+ H+KS
Sbjct:   30 PAPSQAEKKSRARAQHIVPCTISQLLSATLVDEVFR-IGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKANSQPSAGRAPISNPGMSEAGNFGGNSFMPANGLTVAQNQVLNLIKACPRPEGLN-----FQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDDDHFKS 266          
The following BLAST results are available for this feature:
BLAST of DY305539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RFA2_SCHPO1.358e-1427.16Replication factor A protein 2 OS=Schizosaccharomy... [more]
RFA2_RAT8.239e-1223.46Replication protein A 32 kDa subunit OS=Rattus nor... [more]
RFA2_PONAB2.397e-1122.63Replication protein A 32 kDa subunit OS=Pongo abel... [more]
RFA2_HUMAN2.397e-1122.63Replication protein A 32 kDa subunit OS=Homo sapie... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM1BD11RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305539 ID=DY305539; Name=DY305539; organism=Citrus sinensis; type=EST; length=1253bp
GAGCCAGTTTAATGTATTCAGGCGAATTCTACGGAGCTGCCGCCTTTGCC
GGCGGTGGATTTATGCCGTCTCAGGCCACCACTGTTCCTGATCCCTCCTC
TTCTTTCTCTAAAAATCGTAATGTGCGGACCTTGCTGCCGATGACTGTTA
AACAATTAAGTGAATTATCAAGTAATGATGAATCGAGTGCTAGCATTGAT
GGAGCAGATGTCAACACTATTACAGTTGTGGGGATAGTTTGTGATATGCA
AGACAAAGAACCTCAGTTTATATTCCTTATTGATGATGGCACTGGACGGA
TTGAGTGCAGTAGATGGGCTCATGAACAGATGGAGTTCAATGAAGTGAAT
CAAATCTCGAAAGGAATGTATGTTCGTGTTTATGGACACTTGAAGGCTTT
TCAGGATAAAAGAAGCTTAAATGCATACTCCCTTCGGCCTATCATTGACT
TTAATGAGATTACAAGCCATTTCGTCGAGTGTATATATGTCCAACTCTAC
AACACCAGGTTACGGTATAGCTTTGATGAAGGAAAGAGCATTGATCAGAT
GGTGTTAGACTTTTTGAGAAGACCTGAGTTTCTTGCAAATAACAATGGAG
TTCATCGCAATGTGATTTCTCAACAGCTAAATCTGCCAATGGATAAGCTC
ATGGAAGCTTTAGAATCTCTTAACAAAAATAGCTTGGTTTACTCAATCGA
TGAGTTTCACTATAAATCAGCTGTCAATGCATGACATGTCGGGCCAAAAT
TATGCCCATTTGCCAGCCTTGCTATCCCTCTGCAGGTACTTCCCATCGTT
CATACTTCATGGTCTGAACTTGTTCCAGAACTGTATTGCGTAACTTAGTG
TACTTTTCCTAACCTCGGTAACCTTGCTCAAGCACTGCATTAGGACTTAA
TGTCTCTCCAATCCAAAAAATATTGATTCCCTCCTATTCCCTTTTAAAAA
AAAAAAAAAACTCGAGGGGGGGCCCGGGACCCCATTTCCCCCTTAAGGGA
AGCCAATTCAAATTCATTGCCCTTTTTTTAAAAGTCTCGGAATGGGAAAA
ACCCGGGGTTTACCCAATTTATACCCCTTTCGCCCCTTCCCCCTTTTCCC
CCCTGGGGGATAAAAAAAAAAAAACCCCCCCCCCCATACCCCCCCTTCCC
CCACACTGTGGCCCCCCCCGCCAAGGGGGGGAAAGGGGAAAAAAATTTTA
AAACCGTTTATAAAATTTTTTTTTTATAAAAAAAATTTTCCCCGTTTTAT
AAA
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