DY305537

Overview
NameDY305537
Unique NameDY305537
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1126
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY305537 vs. ExPASy Swiss-Prot
Match: SIZ1_ARATH (E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana GN=SIZ1 PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 2.772e-48
Identity = 97/169 (57.40%), Postives = 127/169 (75.15%), Query Frame = 2 
Query:   17 GFMDLQHGS-INCSTPMNG-YTLAPDTSMGSASLVPGCTVGAAADMSDALVDNPLAFDREDPSLQIFLPTRPSDTSVQTELRDQADVANGIRTEDWISLRLGDGVTGGQNELAAANGLNSKQPVHSRESAMDSLADTASLLLGMNEGRSEKASRQRSDSPFSFPRQKRS 517
            G + L H S +NCS  +NG YT+AP+TSM S  +VPG T    ++ +D LVDNPLAF R+DPSLQIFLPT+P D S Q+  ++QAD++NG+R+EDWISLRLGD  +G   + A  NG+NS   + +RE +MD+  +TASLLLGMN+ R +KA +QRSD+PFSFPRQKRS
Sbjct:  694 GLVGLHHHSPLNCSPEINGGYTMAPETSMASVPVVPGST--GRSEANDGLVDNPLAFGRDDPSLQIFLPTKP-DASAQSGFKNQADMSNGLRSEDWISLRLGDSASGNHGDPATTNGINSSHQMSTREGSMDTTTETASLLLGMNDSRQDKAKKQRSDNPFSFPRQKRS 859
[Close]
BLAST of DY305537 vs. ExPASy Swiss-Prot
Match: SIZ1_ORYSJ (E3 SUMO-protein ligase SIZ1 OS=Oryza sativa subsp. japonica GN=SIZ1 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 8.386e-29
Identity = 76/168 (45.24%), Postives = 106/168 (63.10%), Query Frame = 2 
Query:   65 NGYTLAPDTSMGSASLVPGCTVGAAA-DMSDALVDNPLAFDREDPSLQIFLPTRPSDTSVQTELRDQADVANGIRTEDWISLRLGDGVTGGQNELAAANGLNSKQPVHSRESAMDSLADTASLLLGMNEGRSEKA--SRQRSDSPFSFPRQKRSVRPRLYLSIDSDSE 559
            N Y+L  +  +  AS+ P  +V   + +M  +LVDNPLA   +DPSLQIFLP++PS   +Q EL ++A+  NG++++DWISL L  G  GG NE  A   +NS+  + S E+ ++ L D AS  L  N  R   A  + +R ++ FS PRQ RSVRPRL LSID+DSE
Sbjct:  710 NDYSLDCNVGVEEASVTPALSVCRNSNEMHGSLVDNPLALVGDDPSLQIFLPSQPSSVPLQEELSERANAPNGVQSDDWISLTLAAG--GGGNEEPAPADVNSQPQIPSTETGIEPLTDAASAFLSTNIERRSGADLNPRRIENIFSHPRQPRSVRPRLCLSIDTDSE 875
The following BLAST results are available for this feature:
BLAST of DY305537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SIZ1_ARATH2.772e-4857.40E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thalian... [more]
SIZ1_ORYSJ8.386e-2945.24E3 SUMO-protein ligase SIZ1 OS=Oryza sativa subsp.... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM1BD09RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305537 ID=DY305537; Name=DY305537; organism=Citrus sinensis; type=EST; length=1126bp
GTAGATGTCCCTAGATGGCTTTATGGATTTGCAGCACGGCTCTATCAACT
GTTCAACTCCAATGAATGGTTATACATTGGCTCCAGATACTTCAATGGGT
TCTGCATCTTTAGTCCCAGGTTGTACTGTTGGAGCTGCTGCCGATATGAG
TGATGCCTTAGTGGACAATCCCTTGGCTTTTGACCGGGAAGACCCCTCTC
TTCAAATATTTCTTCCAACAAGGCCTTCAGATACTTCTGTACAGACCGAG
TTGAGAGATCAAGCTGACGTGGCCAACGGTATTCGTACTGAGGATTGGAT
CTCCCTTCGGCTTGGGGATGGTGTCACCGGCGGTCAAAATGAGTTAGCAG
CTGCAAACGGATTAAATTCGAAACAGCCAGTACATTCCAGAGAAAGTGCT
ATGGATTCTTTAGCTGACACTGCTTCTTTGCTTCTTGGTATGAACGAAGG
AAGATCTGAGAAGGCAAGCAGGCAAAGGTCGGATAGTCCATTCTCATTTC
CCCGCCAAAAACGCTCTGTAAGACCGCGATTGTATCTCTCTATTGACTCA
GACTCGGAATAGAAAATTTTGGACCATATAAAATCATGAAAATACTGGAG
ATCATGGTTGACCATTTCTGGGATCGAAGGCTTTCTCACTGAGTGGTTTG
TTGCTCAGCCCCTCTCGAAGTAGAAGAAAGTGGACAAATATTATGGACCT
TGTGAAATGTTCAATGTGGTGTGAGAAATACACAGCAACACCGAGTTAGC
AAAAGAAAAAGAAAGAGTTTCCTATTAAAAATTTGTGCCAGCACCTGCAG
GATTTTTCAAGCAGAGCTACAGGTTTATTTGTCATACCCTCCTCACTTCT
GTATGGTCTATAAATATTTCTCTTTATTGTTTGATAAGAACAAGTTTCTA
TCAGTATTTTCCCCTGCGTTGTTATAAAAAATCTGCAGTTCCGGCCCTGA
AAAATTGTAAAGAAATTGAAAACATTAAATCCTAAATTTGGAATTTGTTC
ATTGGAAAACCTTTTGATTTTATTGGGGGAAACACCCCCTAAGGCAAACA
GGGAATTCCCCTTTTTTTCCCTTTTTATTTTAAAATAAAAAAACTTGGAA
AATCTTTCCCCATTTAAAATTTTTTA
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