EY702564

Overview
NameEY702564
Unique NameEY702564
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702564_ssr185 microsatellite EY702564_ssr185:185..205. BLAST: Citrus ESTs to Prunus persica proteins V1
EY702564_ssr373 microsatellite EY702564_ssr373:373..384. BLAST: Citrus ESTs to Prunus persica proteins V1
EY702564_ssr417 microsatellite EY702564_ssr417:417..434. BLAST: Citrus ESTs to Prunus persica proteins V1
EY702564_ssr23 microsatellite EY702564_ssr23:23..34. BLAST: Citrus ESTs to Prunus persica proteins V1
EY702564_ssr80 microsatellite EY702564_ssr80:80..95. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10148 contig Csv1_Contig10148:66..944. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702564 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.384e-15
Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 2
Query:  500 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSE--GYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLSWATFSGSDRRTEAWSD--LSIFVG 793
            T+W+GDL  WMD TF+   ++   + VNVKV+R+K +       Y FV+F S AAAE+ L  Y+ +++P     F+L+WAT  G         D   SIFVG
Sbjct:   86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVG 187          

HSP 2 Score: 27.335 bits (59), Expect = 1.384e-15
Identity = 14/27 (51.85%), Postives = 15/27 (55.56%), Query Frame = 3
Query:  792 GDLAPDVTDSILQETFSSKYPSVKGAR 872
            GDL P   DS L  TF S YPS   A+
Sbjct:  187 GDLLPTTEDSDLFMTFRSIYPSCTSAK 213          
BLAST of EY702564 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.030e-15
Identity = 39/101 (38.61%), Postives = 62/101 (61.39%), Query Frame = 2
Query:  500 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD--QPFRLSWATFSGSDRRTEAWSDLSIFVG 793
            ++W+GDL  +MDE F+   F+  G+ V++VK+IRN+ TG   GY FVEF   A AEK L   +G  +P     + F+L++AT+    ++ +   + S+FVG
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVG 101          

HSP 2 Score: 33.113 bits (74), Expect = 4.030e-15
Identity = 14/27 (51.85%), Postives = 17/27 (62.96%), Query Frame = 3
Query:  792 GDLAPDVTDSILQETFSSKYPSVKGAR 872
            GDL PDV D +L E F   YPS +G +
Sbjct:  101 GDLTPDVDDGMLYEFFVKVYPSCRGGK 127          
BLAST of EY702564 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 4.030e-15
Identity = 39/101 (38.61%), Postives = 62/101 (61.39%), Query Frame = 2
Query:  500 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD--QPFRLSWATFSGSDRRTEAWSDLSIFVG 793
            ++W+GDL  +MDE F+   F+  G+ V++VK+IRN+ TG   GY FVEF   A AEK L   +G  +P     + F+L++AT+    ++ +   + S+FVG
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVG 101          

HSP 2 Score: 33.113 bits (74), Expect = 4.030e-15
Identity = 14/27 (51.85%), Postives = 17/27 (62.96%), Query Frame = 3
Query:  792 GDLAPDVTDSILQETFSSKYPSVKGAR 872
            GDL PDV D +L E F   YPS +G +
Sbjct:  101 GDLTPDVDDGMLYEFFVKVYPSCRGGK 127          
BLAST of EY702564 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.030e-15
Identity = 39/101 (38.61%), Postives = 62/101 (61.39%), Query Frame = 2
Query:  500 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD--QPFRLSWATFSGSDRRTEAWSDLSIFVG 793
            ++W+GDL  +MDE F+   F+  G+ V++VK+IRN+ TG   GY FVEF   A AEK L   +G  +P     + F+L++AT+    ++ +   + S+FVG
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVG 101          

HSP 2 Score: 33.113 bits (74), Expect = 4.030e-15
Identity = 14/27 (51.85%), Postives = 17/27 (62.96%), Query Frame = 3
Query:  792 GDLAPDVTDSILQETFSSKYPSVKGAR 872
            GDL PDV D +L E F   YPS +G +
Sbjct:  101 GDLTPDVDDGMLYEFFVKVYPSCRGGK 127          
BLAST of EY702564 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.030e-15
Identity = 39/101 (38.61%), Postives = 62/101 (61.39%), Query Frame = 2
Query:  500 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD--QPFRLSWATFSGSDRRTEAWSDLSIFVG 793
            ++W+GDL  +MDE F+   F+  G+ V++VK+IRN+ TG   GY FVEF   A AEK L   +G  +P     + F+L++AT+    ++ +   + S+FVG
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVG 101          

HSP 2 Score: 33.113 bits (74), Expect = 4.030e-15
Identity = 14/27 (51.85%), Postives = 17/27 (62.96%), Query Frame = 3
Query:  792 GDLAPDVTDSILQETFSSKYPSVKGAR 872
            GDL PDV D +L E F   YPS +G +
Sbjct:  101 GDLTPDVDDGMLYEFFVKVYPSCRGGK 127          
BLAST of EY702564 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 6.709e-15
Identity = 44/123 (35.77%), Postives = 66/123 (53.66%), Query Frame = 2
Query:  461 NGSNNNFTNDET----KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLSWATFSG-SDRRTEAWSDLSIFVGRFGSRCN 814
            N SN   + DE      T+W+G+L  W+ E F+   ++  G+ V VK+IRN+ TG + GY FVEF S   A   + S +   +P T+  F+L+WA+  G  ++     S+ SIFVG      N
Sbjct:   77 NTSNYGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVN 198          

HSP 2 Score: 26.5646 bits (57), Expect = 6.709e-15
Identity = 11/27 (40.74%), Postives = 18/27 (66.67%), Query Frame = 3
Query:  792 GDLAPDVTDSILQETFSSKYPSVKGAR 872
            GDL+P+V +  +   F+S+Y S K A+
Sbjct:  191 GDLSPNVNEFDVYSLFASRYNSCKSAK 217          
BLAST of EY702564 vs. ExPASy Swiss-Prot
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.815e-15
Identity = 38/101 (37.62%), Postives = 62/101 (61.39%), Query Frame = 2
Query:  500 TIWIGDLFHWMDETFLHNCFSHTGQVV-NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP--FRLSWATFSGSDRRTEAWSDLSIFVG 793
            ++W+GDL  +MDE F+   FS  G+    VK+I ++ TG S GY FVE    A+ ++ +Q  +G L+P ++ P  F+L++AT+    +R E   + S+FVG
Sbjct:    7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATYG---KRPEPGPEFSVFVG 104          

HSP 2 Score: 29.261 bits (64), Expect = 8.815e-15
Identity = 13/27 (48.15%), Postives = 17/27 (62.96%), Query Frame = 3
Query:  792 GDLAPDVTDSILQETFSSKYPSVKGAR 872
            GDL  +V D  L + F  K+PS KGA+
Sbjct:  104 GDLTSEVDDYQLHQFFLKKFPSCKGAK 130          
BLAST of EY702564 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.149e-14
Identity = 38/101 (37.62%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  500 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD--QPFRLSWATFSGSDRRTEAWSDLSIFVG 793
            ++W+GDL  +MDE F+   F+  G+ V++VK+IRN+ TG   GY FVEF   A AEK L   +G  +P     + F+L++ T+    ++ +   + S+FVG
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTYG---KQPDNSPEYSLFVG 101          

HSP 2 Score: 33.113 bits (74), Expect = 1.149e-14
Identity = 14/27 (51.85%), Postives = 17/27 (62.96%), Query Frame = 3
Query:  792 GDLAPDVTDSILQETFSSKYPSVKGAR 872
            GDL PDV D +L E F   YPS +G +
Sbjct:  101 GDLTPDVDDGMLYEFFVKVYPSCRGGK 127          
The following BLAST results are available for this feature:
BLAST of EY702564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CSX1_SCHPO1.384e-1540.20RNA-binding post-transcriptional regulator csx1 OS... [more]
TSAP1_RAT4.030e-1538.61tRNA selenocysteine 1-associated protein 1 OS=Ratt... [more]
TSAP1_MOUSE4.030e-1538.61tRNA selenocysteine 1-associated protein 1 OS=Mus ... [more]
TSAP1_HUMAN4.030e-1538.61tRNA selenocysteine 1-associated protein 1 OS=Homo... [more]
TSAP1_BOVIN4.030e-1538.61tRNA selenocysteine 1-associated protein 1 OS=Bos ... [more]
YG41_SCHPO6.709e-1535.77Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
TSP1L_DANRE8.815e-1537.62tRNA selenocysteine 1-associated protein 1-like OS... [more]
TSAP1_PONAB1.149e-1437.62tRNA selenocysteine 1-associated protein 1 OS=Pong... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-009-E05-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702564 ID=EY702564; Name=EY702564; organism=Citrus sinensis; type=EST; length=880bp
CCACGCGTCCGTCTCTCGCCGAGCTCGCTCGCTCTTCACGCGTAGCAGAG
TTTAAAACTAAAAACTTTCACGAGAGGGAGAGTGAGTGAGTGAGTTGAAA
AAAGGAAATTTTTGAATAGTTGATTTTAGTCCTCCGATCAGATCAGAGAG
GATGCAGCAATCTAACGGCGGAGACGCGAACGCCGCGGCGGCGGCGGCGG
CGGCGGTGTCCGGAGGAGCTGGAGGAGGATCTCAGCCGACGCCACAGCAG
CCGTACCACTGGGTCCCGCCGCACCAGCAGCAGTGGATGGCTATGATGCA
GTATCCGGCGGCGGCGATGGCCATGATGCAACAGCAGCAGATGATGATGT
ATCCTCATCATTACATGCCGTACGGCGGCGGCGGTCACCCGTATTATCAG
AACGGCGGCGGCGTAAAGCAGCAGCAGCAGCAGCAACATGGATTGAGTAA
CGGAAAACAAAACGGATCTAATAATAATTTTACTAATGACGAGACTAAGA
CTATATGGATTGGTGATTTGTTTCATTGGATGGACGAAACTTTTCTTCAT
AATTGTTTCTCACATACTGGTCAGGTTGTAAATGTTAAAGTTATCCGCAA
TAAGCAAACTGGTCAGTCAGAAGGGTATGGATTTGTTGAGTTCTATTCAC
GTGCTGCAGCTGAGAAAGTTTTGCAGAGCTATAGTGGTTCTCTAATGCCA
AATACTGACCAGCCTTTCCGACTTAGTTGGGCGACCTTTAGCGGCAGTGA
TAGACGAACAGAAGCATGGTCTGATCTGTCTATATTTGTAGGGAGATTTG
GCTCCAGATGTAACTGATAGTATATTGCAGGAGACCTTTTCTAGTAAGTA
TCCATCTGTAAAAGGAGCAAGGTATCATCG
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