DY305528

Overview
NameDY305528
Unique NameDY305528
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1316
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6669 contig Csv1_Contig6669:1..1316. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY305528 vs. ExPASy Swiss-Prot
Match: HT1_ARATH (Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.936e-16
Identity = 45/121 (37.19%), Postives = 60/121 (49.59%), Query Frame = -2 
Query:  719 LALGRGPGVVFQSPRGFFYGDLKPAKFVGYPQFRSFLSLADFXXXXXXXXXXXX*CQKPVLFRWMAPEFSATGPLRQGEKKHYNNKVDVYSFGIVLWEL*PNRLPFEGMSNLQAAYAAAFK 1081
            LAL    G+ +   +G  + DLK    +   + R  + +ADF                   +RWMAPE          ++K Y  KVDVYSFGIVLWEL    LPF+GM+ +QAA+A A K
Sbjct:  192 LALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMR--VKVADFGTSCLETQCREAKGNMGT-YRWMAPEMI--------KEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEK 301

HSP 2 Score: 43.5134 bits (101), Expect = 1.936e-16
Identity = 17/40 (42.50%), Postives = 25/40 (62.50%), Query Frame = -1 
Query:  480 RPGLPEDISPDLAFIVQSCWVEDPNLRPSFSQIIRMLNAF 599
            RP LP    P LA +++ CW E+P+ RP FS I+ +L  +
Sbjct:  304 RPPLPASCQPALAHLIKRCWSENPSKRPDFSNIVAVLEKY 343
[Close]
BLAST of DY305528 vs. ExPASy Swiss-Prot
Match: Y9955_DICDI (Probable serine/threonine-protein kinase DDB_G0267514 OS=Dictyostelium discoideum GN=DDB_G0267514 PE=3 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 5.121e-12
Identity = 27/58 (46.55%), Postives = 34/58 (58.62%), Query Frame = -2 
Query:  719 WMAPEFSATGPLRQGEKKHYNNKVDVYSFGIVLWEL*PNRLPFEGMSNLQAAYAAAFK 892
            WM+PE      L  GE   Y  KVDVY+FGI+LWEL    LP+ G+ ++Q A A   K
Sbjct:  824 WMSPE------LLMGED--YTEKVDVYAFGIILWELGTGELPYSGLDSVQLALAVTTK 873

HSP 2 Score: 41.5874 bits (96), Expect = 5.121e-12
Identity = 18/47 (38.30%), Postives = 29/47 (61.70%), Query Frame = -1 
Query:  486 SLLSVT*HARPGLPEDISPDLAFIVQSCWVEDPNLRPSFSQIIRMLN 626
            +L   T   RP +P      L+ ++Q+CW +DP  RPSF++I+ +LN
Sbjct:  867 ALAVTTKSLRPPIPNAWPYQLSHLIQACWHQDPLKRPSFTEILNLLN 913
The following BLAST results are available for this feature:
BLAST of DY305528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
HT1_ARATH1.936e-1637.19Serine/threonine-protein kinase HT1 OS=Arabidopsis... [more]
Y9955_DICDI5.121e-1246.55Probable serine/threonine-protein kinase DDB_G0267... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM1BC06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305528 ID=DY305528; Name=DY305528; organism=Citrus sinensis; type=EST; length=1316bp
AAATTTGCTTAATTGCAAAATATAACCACAATTTTGAAATGAAGTAAAAT
TGATATGAACACGAAAGAGTTCAAACCATGTATCTACTTTACAACTAGTC
ATGTAAATAATTATATTTTTTGTCTTTTTTTCTTATTTTCCAGATGAGTT
TCCTCACTAACATGATTTCATTTCAACATTTTTTCACTTTTCATCCTCAG
CTAATCGTCATCGTTAGGGTAATAAACCAGAGATTCACCAAAAATATATA
CCTACTGTTGCATGCCAGCTTTCTTTGAATTGGAACAAAAGAAATTATCC
AAAATTTTACCCACTCATTGCAAGTTCTTGGTCCTCTTAGCAGTGAAAAG
TTGGCGAAGGAAAGCAAACTTTCCTCTTGCACGAGCAGAGAACTCAGTCA
TGGCCCCATTACTTGTGGCGGCTGCCTCGTTGGTATCGGATTCTGGAACA
GATGGTGAAGGTGGTCTGAGCGTGAAGAGGAAGGCATTGAGCATGCGGAT
GATCTGACTGAAGCTTGGTCTCAAGTTAGGGTCCTCAACCCAACACGACT
GAACAATAAATGCAAGATCCGGGGATATATCCTCCGGAAGACCTGGCCTC
GCATGCTACGTCACAGACAACAATGATTATCAAGTTCGAAATATATTATT
TGCAATATTCATAGTTTATAATGAACCAATGTGATAGAGAATTATGGTGC
ATATATTGATTCTTGAACCTTAAAAGCAGCAGCATAAGCAGCCTGCAAGT
TCGACATGCCTTCGAATGGCAAACGGTTGGGTTACAGTTCCCATAGGACA
ATTCCGAAACTGTAAACATCAACCTTGTTATTGTAATGCTTCTTCTCTCC
CTGACGCAATGGTCCTGTGGCTGAAAACTCAGGAGCCATCCAGCGAAAAA
GAACCGGTTTCTGGCATCATCCTCTCCGGTAACAGTTTCCTCCCCTCCCA
AGACCAAAATCCGCAAGGCTCAAAAAACTTCGGAATTGGGGGTAACCAAC
AAATTTTGCAGGTTTTAAATCCCCATAGAAAAATCCCCTTGGGGATTGGA
AAACAACCCCGGGGCCCCGGCCTAATGCCAAGAACCAAAAATAAAAAGCC
CCAGAAAAAAATTTTAATTTTGTGGGAAAAAAAGGGAAACATAAAATATT
TTTTGCAACCCCCACTCCCCCTTGGAAAAAAATCCCCCTTCCCCCCTATA
CCCCTTTTGGTGGGATAATCCTTATACACCCCCCCAACAAAAACAAATGG
AGAGAAAAAATATTGTGCGTGGTGTTGTTTTTTCTCCCCTTTAATACAAA
CACACAAATTTATTAC
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