EY702562

Overview
NameEY702562
Unique NameEY702562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702562 vs. ExPASy Swiss-Prot
Match: SSG1_MANES (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Manihot esculenta GN=WAXY PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.518e-24
Identity = 64/150 (42.67%), Postives = 85/150 (56.67%), Query Frame = 2
Query:  275 MATAVAASSFVSRSYGHEVASGLNSKASQMKF-----RCMKHSGLRSLNIIDDLQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFGGTEVAPWSKLGDLVMFLEVCHQHWPPMGHRVMTIAPGYDQYQDAWDTDGVLDLKL 709
            MAT +AA  FVSRS  H     L +KA+ +       + +  +GLRSLN +D LQ+KT  SK      A  NG      P+  I+CG G+N++F G EV PWSK G L   L          GHRVMT++P YDQY+DAWDT   +++K+
Sbjct:    1 MATVIAAH-FVSRS-SHLSIHALETKANNLSHTGPWTQTITPNGLRSLNTMDKLQMKTQ-SKAVKKVSATGNG-----RPAAKIICGHGMNLIFVGAEVGPWSKTGGLGDVLGGLPPAMAARGHRVMTVSPRYDQYKDAWDTSVSVEIKI 142          

HSP 2 Score: 32.3426 bits (72), Expect = 5.518e-24
Identity = 17/32 (53.12%), Postives = 19/32 (59.38%), Query Frame = 1
Query:  745 QRGVDRVLGDHLGFLARGGGKPHSKSMGPGLG 840
            +RGVDRV  DH  FL +  GK  SK  GP  G
Sbjct:  156 KRGVDRVFVDHPMFLEKVWGKTGSKIYGPRAG 187          
BLAST of EY702562 vs. ExPASy Swiss-Prot
Match: SSG1_SOLTU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum GN=WAXY PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.518e-24
Identity = 62/147 (42.18%), Postives = 85/147 (57.82%), Query Frame = 2
Query:  275 MATAVAASSFVSRSYGHEVASGLNSKASQMKFR--CMKHSGLRSLNIIDDLQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFGGTEVAPWSKLGDLVMFLEVCHQHWPPMGHRVMTIAPGYDQYQDAWDTDGVLDLKL 709
            MA+  A+  FVSRS   + +    S  SQ+  R   + H+GLR++N +D LQ +T      T + A R   + + G S  IVCG G+N++F GTEV PWSK G L   L          GHRVMTI+P YDQY+DAWDT   +++K+
Sbjct:    1 MASITASHHFVSRS---QTSLDTKSTLSQIGLRNHTLTHNGLRAVNKLDGLQSRTNTK--VTPKMASRTETK-RPGCSATIVCGKGMNLIFVGTEVGPWSKTGGLGDVLGGLPPALAARGHRVMTISPRYDQYKDAWDTSVAVEVKV 141          

HSP 2 Score: 32.3426 bits (72), Expect = 5.518e-24
Identity = 17/32 (53.12%), Postives = 19/32 (59.38%), Query Frame = 1
Query:  745 QRGVDRVLGDHLGFLARGGGKPHSKSMGPGLG 840
            +RGVDRV  DH  FL +  GK  SK  GP  G
Sbjct:  155 KRGVDRVFVDHPMFLEKVWGKTGSKIYGPKAG 186          
BLAST of EY702562 vs. ExPASy Swiss-Prot
Match: SSG1_ARATH (Probable granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=WAXY PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.485e-23
Identity = 63/162 (38.89%), Postives = 93/162 (57.41%), Query Frame = 2
Query:  275 MATAVAASSFVSRS--YGHEVASGLNSKAS-QMKFRCMKHSGLRSLNIIDDLQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFGGTEVAPWSKLGDLVMFLEVCHQHWPPMGHRVMTIAPGYDQYQDAWDTDGVLDLKLETN*KS-RLLPCHK 748
            MAT  A+S+FVSR+  + +  AS  +  A   +K + + H GLRS N++D+LQ ++ A K  +++ + R+      G    IVC  G++++F G EV PWSK G L   L          GHRVMTI P YDQY+DAWDT  V+ +K+    ++ R   C+K
Sbjct:    1 MATVTASSNFVSRTSLFNNHGASSCSDVAQITLKGQSLTHCGLRSFNMVDNLQRRSQA-KPVSAKSSKRSSKVKTAGK---IVCEKGMSVIFIGAEVGPWSKTGGLGDVLGGLPPALAARGHRVMTICPRYDQYKDAWDTCVVVQIKVGDKVENVRFFHCYK 158          

HSP 2 Score: 32.7278 bits (73), Expect = 3.485e-23
Identity = 18/32 (56.25%), Postives = 20/32 (62.50%), Query Frame = 1
Query:  745 QRGVDRVLGDHLGFLARGGGKPHSKSMGPGLG 840
            +RGVDRV  DH  FLA+  GK  SK  GP  G
Sbjct:  158 KRGVDRVFVDHPIFLAKVVGKTGSKIYGPITG 189          
BLAST of EY702562 vs. ExPASy Swiss-Prot
Match: SSG1_ANTMA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Antirrhinum majus GN=WAXY PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.723e-22
Identity = 60/162 (37.04%), Postives = 91/162 (56.17%), Query Frame = 2
Query:  275 MATAVAASSFVSRSYGHEVAS-GLNSKASQMKFRCMK--HSGLRSLNIIDDLQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFGGTEVAPWSKLGDLVMFLEVCHQHWPPMGHRVMTIAPGYDQYQDAWDTDGVLDLKLETN*KS-RLLPCHK 748
            MAT V AS  VS  +G   +S    +  +Q+  R  +  H+GLRS+N++D LQ++  A +  +  +   NG      P   I+CG G+N++F   EV PWSK G L   +          GHRVMT++P YDQY+DAWDT  V+++K+  + ++ R   C+K
Sbjct:    1 MAT-VTASQLVSHVHGGATSSPDTKTNLAQVGLRNQQFTHNGLRSINMVDKLQMRNNAKQSRSLVKKTDNG-----SPLGKIICGTGMNLVFVLAEVGPWSKTGGLGDVVGGLPPAMAGNGHRVMTVSPRYDQYKDAWDTSVVVEIKVGDSIETVRFFHCYK 156          

HSP 2 Score: 33.113 bits (74), Expect = 3.723e-22
Identity = 17/32 (53.12%), Postives = 19/32 (59.38%), Query Frame = 1
Query:  745 QRGVDRVLGDHLGFLARGGGKPHSKSMGPGLG 840
            +RGVDRV  DH  FL +  GK  SK  GP  G
Sbjct:  156 KRGVDRVFVDHPIFLEKVWGKTKSKIYGPNAG 187          
BLAST of EY702562 vs. ExPASy Swiss-Prot
Match: SSG1_IPOBA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Ipomoea batatas GN=WAXY PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.575e-19
Identity = 59/149 (39.60%), Postives = 80/149 (53.69%), Query Frame = 2
Query:  275 MATAVAASSFVSRSYGHEVASGLNSKASQMKFR--CMKHSGLRSLNIIDDLQVKTMASKLATSRQAGRNGFRSQNGPSL-MIVCGV-GLNILFGGTEVAPWSKLGDLVMFLEVCHQHWPPMGHRVMTIAPGYDQYQDAWDTDGVLDLKL 709
            MAT + AS FVS   G   +        Q+  R   + H+GLR +N ID LQ++T A K        +NG  ++ G +   IVC   G+N++F G EV PW K G L   L          GHRVMT+ P YDQY+DAWDT  V++L++
Sbjct:    1 MAT-ITASHFVSHVCGGATSGESKVGLGQLALRSQAVTHNGLRPVNKIDMLQLRTSAKK------PSKNGRENEGGMAAGTIVCKQQGMNLVFVGCEVGPWCKTGGLGDVLGGLPPALAARGHRVMTVCPRYDQYKDAWDTCVVVELQV 142          

HSP 2 Score: 30.8018 bits (68), Expect = 1.575e-19
Identity = 16/33 (48.48%), Postives = 19/33 (57.58%), Query Frame = 1
Query:  745 QRGVDRVLGDHLGFLARGGGKPHSKSMGPGLGR 843
            +RGVDRV  DH  FL +  GK  S   GP  G+
Sbjct:  156 KRGVDRVFVDHPMFLEKVWGKTGSMLYGPKAGK 188          
BLAST of EY702562 vs. ExPASy Swiss-Prot
Match: SSG1_SORBI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Sorghum bicolor GN=WAXY PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 9.905e-19
Identity = 44/113 (38.94%), Postives = 62/113 (54.87%), Query Frame = 2
Query:  413 DDLQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFGGTEVAPWSKLGDLVMFLEVCHQHWPPMGHRVMTIAPGYDQYQDAWDTDGVLDLKLETN*KS-RLLPCHK 748
            D L ++T A      + A R G R    PSL++    G+N++F G E+APWSK G L   L          GHRVM ++P YDQY+DAWDT  V ++K+    ++ R   C+K
Sbjct:   44 DALSMRTSACPAPRQQPAARRGGRGGRFPSLVVCATAGMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVVSPRYDQYKDAWDTSVVSEIKMGDGYETVRFFHCYK 156          

HSP 2 Score: 32.3426 bits (72), Expect = 9.905e-19
Identity = 17/32 (53.12%), Postives = 18/32 (56.25%), Query Frame = 1
Query:  745 QRGVDRVLGDHLGFLARGGGKPHSKSMGPGLG 840
            +RGVDRV  DH  FL R  GK   K  GP  G
Sbjct:  156 KRGVDRVFIDHPLFLERVWGKTEEKIYGPDAG 187          
BLAST of EY702562 vs. ExPASy Swiss-Prot
Match: SSG1_MAIZE (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Zea mays GN=WAXY PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.832e-18
Identity = 46/121 (38.02%), Postives = 65/121 (53.72%), Query Frame = 2
Query:  389 GLRSLNIIDDLQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFGGTEVAPWSKLGDLVMFLEVCHQHWPPMGHRVMTIAPGYDQYQDAWDTDGVLDLKLETN*KS-RLLPCHK 748
            G R+    D L ++T A      +Q  R G R    PSL++    G+N++F G E+APWSK G L   L          GHRVM ++P YDQY+DAWDT  V ++K+    ++ R   C+K
Sbjct:   34 GARASAAADTLSMRTSARAAPRHQQQARRGGRF---PSLVVCASAGMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVVSPRYDQYKDAWDTSVVSEIKMGDGYETVRFFHCYK 151          

HSP 2 Score: 31.9574 bits (71), Expect = 2.832e-18
Identity = 17/32 (53.12%), Postives = 18/32 (56.25%), Query Frame = 1
Query:  745 QRGVDRVLGDHLGFLARGGGKPHSKSMGPGLG 840
            +RGVDRV  DH  FL R  GK   K  GP  G
Sbjct:  151 KRGVDRVFVDHPLFLERVWGKTEEKIYGPVAG 182          
BLAST of EY702562 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSJ (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=WAXY PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.079e-16
Identity = 43/114 (37.72%), Postives = 61/114 (53.51%), Query Frame = 2
Query:  413 DDLQVKTMASKLATSRQAGRNGFRSQNGPSLMIVC-GVGLNILFGGTEVAPWSKLGDLVMFLEVCHQHWPPMGHRVMTIAPGYDQYQDAWDTDGVLDLKL-ETN*KSRLLPCHK 748
            D   +    S  AT +Q       S+  PS+++   G G+N++F G E+APWSK G L   L          GHRVM I+P YDQY+DAWDT  V ++K+ +   + R   C+K
Sbjct:   44 DATSLSVTTSARATPKQQRSVQRGSRRFPSVVVYATGAGMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYK 157          

HSP 2 Score: 31.9574 bits (71), Expect = 9.079e-16
Identity = 16/32 (50.00%), Postives = 18/32 (56.25%), Query Frame = 1
Query:  745 QRGVDRVLGDHLGFLARGGGKPHSKSMGPGLG 840
            +RGVDRV  DH  FL +  GK   K  GP  G
Sbjct:  157 KRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTG 188          
BLAST of EY702562 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=WAXY PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 9.079e-16
Identity = 43/114 (37.72%), Postives = 61/114 (53.51%), Query Frame = 2
Query:  413 DDLQVKTMASKLATSRQAGRNGFRSQNGPSLMIVC-GVGLNILFGGTEVAPWSKLGDLVMFLEVCHQHWPPMGHRVMTIAPGYDQYQDAWDTDGVLDLKL-ETN*KSRLLPCHK 748
            D   +    S  AT +Q       S+  PS+++   G G+N++F G E+APWSK G L   L          GHRVM I+P YDQY+DAWDT  V ++K+ +   + R   C+K
Sbjct:   44 DATSLSVTTSARATPKQQRSVQRGSRRFPSVVVYATGAGMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYK 157          

HSP 2 Score: 31.9574 bits (71), Expect = 9.079e-16
Identity = 16/32 (50.00%), Postives = 18/32 (56.25%), Query Frame = 1
Query:  745 QRGVDRVLGDHLGFLARGGGKPHSKSMGPGLG 840
            +RGVDRV  DH  FL +  GK   K  GP  G
Sbjct:  157 KRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTG 188          
BLAST of EY702562 vs. ExPASy Swiss-Prot
Match: SSG1_ORYGL (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza glaberrima GN=WAXY PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.079e-16
Identity = 43/114 (37.72%), Postives = 61/114 (53.51%), Query Frame = 2
Query:  413 DDLQVKTMASKLATSRQAGRNGFRSQNGPSLMIVC-GVGLNILFGGTEVAPWSKLGDLVMFLEVCHQHWPPMGHRVMTIAPGYDQYQDAWDTDGVLDLKL-ETN*KSRLLPCHK 748
            D   +    S  AT +Q       S+  PS+++   G G+N++F G E+APWSK G L   L          GHRVM I+P YDQY+DAWDT  V ++K+ +   + R   C+K
Sbjct:   44 DATSLSVTTSARATPKQQRSVQRGSRRFPSVVVYATGAGMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYK 157          

HSP 2 Score: 31.9574 bits (71), Expect = 9.079e-16
Identity = 16/32 (50.00%), Postives = 18/32 (56.25%), Query Frame = 1
Query:  745 QRGVDRVLGDHLGFLARGGGKPHSKSMGPGLG 840
            +RGVDRV  DH  FL +  GK   K  GP  G
Sbjct:  157 KRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTG 188          
The following BLAST results are available for this feature:
BLAST of EY702562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
SSG1_MANES5.518e-2442.67Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_SOLTU5.518e-2442.18Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ARATH3.485e-2338.89Probable granule-bound starch synthase 1, chloropl... [more]
SSG1_ANTMA3.723e-2237.04Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_IPOBA1.575e-1939.60Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_SORBI9.905e-1938.94Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_MAIZE2.832e-1838.02Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYSJ9.079e-1637.72Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYSI9.079e-1637.72Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYGL9.079e-1637.72Granule-bound starch synthase 1, chloroplastic/amy... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-009-E03-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702562 ID=EY702562; Name=EY702562; organism=Citrus sinensis; type=EST; length=908bp
CCACGCGTCCGCAACTGTCTTAACATCTCTCGCAACTTGAAGTGAAGTTG
TAAACCGCGAGAAAATCCTGCGGGTCGTATTAACCACGAATCTCTAGTAA
GTGATTTCCCATGTGCAAGGCACGGCACGGGAACAACTCTACAAAAGAGC
AAAGAGCGAAGTCAGCTGATGTTCACTTCACGTTCATTCATAGACGCCTG
AGCACCAGATTTCATCAGGAAACTAAGAGGGAAACAAATCTTCAGCAGAG
ACTACAAACATAATAATATCAGCTATGGCTACCGCTGTAGCCGCTTCAAG
CTTCGTCTCAAGGAGTTATGGACATGAGGTAGCTTCAGGATTGAATAGTA
AGGCATCACAGATGAAATTTAGGTGTATGAAGCACAGTGGGCTGAGAAGT
TTAAATATCATAGACGATCTCCAAGTGAAAACAATGGCATCGAAACTAGC
CACCAGCAGGCAAGCTGGGAGGAATGGATTTAGAAGCCAGAACGGGCCAT
CCTTAATGATTGTTTGTGGGGTTGGCCTGAATATCCTCTTTGGTGGAACA
GAGGTTGCTCCTTGGAGTAAACTGGGGGACTTGGTGATGTTCTTGGAGGT
CTGCCACCAGCACTGGCCGCCAATGGGGCACCGTGTCATGACNATTGCAC
CCGGATATGACCAGTACCAAGATGCTTGGGATACTGATGGTGTATTGGAC
CTGAAGTTGGAGACAAATTGAAAAAGTCGCCTCCTTCCATGCCACAAAGA
GGAGTTGATCGGGTGTTGGGGGATCATCTTGGGTTCTTGGCAAGGGGGGG
GGGAAAACCCCATTCAAAATCTATGGGCCCTGGGCTGGGGAGGGCTTCCA
GGACACCCACTTTCGCTTAACTTGGTGGGCCAGCGACTCCTTGAACCCCG
AGAATCTG
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