DY305523

Overview
NameDY305523
Unique NameDY305523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1320
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig414 contig Csv1_Contig414:289..1608. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY305523 vs. ExPASy Swiss-Prot
Match: UBC20_ARATH (Ubiquitin carrier protein E2 20 OS=Arabidopsis thaliana GN=UBC20 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 4.638e-53
Identity = 104/150 (69.33%), Postives = 118/150 (78.67%), Query Frame = 3
Query:  141 AAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKE 590
            A+  SKQP +   TVD+ SV +RLQ ELM LMM GG  G+SAFPE ++IF W GTI G K T++EG  Y+LSL F  DYPFKPP+VKFET CFHPNVD YGNICLDILQDKWSSAYD RTILLSIQSLLGEPN  SPLN+ AA L +N+E
Sbjct:   17 ASNGSKQPAAPTKTVDSQSVLKRLQSELMGLMMGGGP-GISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNTQAAQLWSNQE 165          
BLAST of DY305523 vs. ExPASy Swiss-Prot
Match: UBC19_ARATH (Ubiquitin carrier protein E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 3.324e-51
Identity = 103/150 (68.67%), Postives = 115/150 (76.67%), Query Frame = 3
Query:  141 AAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKE 590
            AA  SKQ      TVD+ SV +RLQ ELM LMM G D G+SAFPE ++IF W GTI G K T++EG  Y+LSL F  DYPFK P+VKFET CFHPNVD YGNICLDILQDKWSSAYD RTILLSIQSLLGEPN  SPLN+ AA L +N+E
Sbjct:   18 AATGSKQSAPPTKTVDSHSVLKRLQSELMGLMM-GADPGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNNQAAQLWSNQE 166          
BLAST of DY305523 vs. ExPASy Swiss-Prot
Match: UBE2C_DICDI (Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 2.634e-48
Identity = 89/132 (67.42%), Postives = 112/132 (84.85%), Query Frame = 3
Query:  195 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKE 590
            SV++RLQ ELM+LMM G   G+SAFP+G++IF WIGTI+G K T+YE + +K+SL+FP DYP+KPP VKFET CFHPNVD  GNICLDIL+DKWS  Y+ R++L+SIQSLLGEPN ESPLNSYAA+L +N++
Sbjct:    6 SVSKRLQSELMNLMM-GPSPGISAFPDGDNIFNWIGTIQGAKDTVYEQMEFKMSLKFPTDYPYKPPTVKFETQCFHPNVDNNGNICLDILKDKWSPVYNVRSLLISIQSLLGEPNNESPLNSYAASLWSNQD 136          
BLAST of DY305523 vs. ExPASy Swiss-Prot
Match: UBE2C_XENLA (Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevis GN=ube2c PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 1.001e-47
Identity = 94/151 (62.25%), Postives = 115/151 (76.16%), Query Frame = 3
Query:  135 ATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK 587
            A ++ +S++   S  +    SV +RLQ+ELM+LMMSG D G+SAFPE +++F WIGTI+G  GT+YE L YKLSL FP  YP+  P VKF T CFHPNVD +GNICLDIL+DKWS+ YD RTILLS+QSLLGEPN ESPLN YAA L  N+
Sbjct:   10 AASSVASRKGQESGTSAARGSVGKRLQQELMTLMMSG-DKGISAFPESDNLFKWIGTIDGAVGTVYEDLRYKLSLEFPSGYPYNAPTVKFVTPCFHPNVDSHGNICLDILKDKWSALYDVRTILLSLQSLLGEPNNESPLNPYAAELWQNQ 159          
BLAST of DY305523 vs. ExPASy Swiss-Prot
Match: UBE2C_MACFA (Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 7.930e-45
Identity = 89/150 (59.33%), Postives = 110/150 (73.33%), Query Frame = 3
Query:  135 ATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 584
            AT+  ++++            V +RLQ+ELM+LMMSG D G+SAFPE +++F W+GTI G  GT+YE L YKLSL FP  YP+  P VKF T C+HPNVD  GNICLDIL+DKWS+ YD RTILLSIQSLLGEPN +SPLN++AA L  N
Sbjct:   10 ATSVTAARKGAEPSGGAARGPVGKRLQQELMTLMMSG-DKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKN 158          
BLAST of DY305523 vs. ExPASy Swiss-Prot
Match: UBE2C_HUMAN (Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 7.930e-45
Identity = 89/150 (59.33%), Postives = 111/150 (74.00%), Query Frame = 3
Query:  135 ATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 584
            AT+ A++++            V +RLQ+ELM+LMMSG D G+SAFPE +++F W+GTI G  GT+YE L YKLSL FP  YP+  P VKF T C+HPNVD  GNICLDIL++KWS+ YD RTILLSIQSLLGEPN +SPLN++AA L  N
Sbjct:   10 ATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSG-DKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKN 158          
BLAST of DY305523 vs. ExPASy Swiss-Prot
Match: UBE2C_BOVIN (Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN=UBE2C PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.036e-44
Identity = 89/150 (59.33%), Postives = 110/150 (73.33%), Query Frame = 3
Query:  135 ATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 584
            A + A++++            V +RLQ+ELM+LMMSG D G+SAFPE +++F W+GTI G  GT+YE L YKLSL FP  YP+  P VKF T C+HPNVD  GNICLDIL+DKWS+ YD RTILLSIQSLLGEPN +SPLN++AA L  N
Sbjct:   10 AASVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSG-DKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKN 158          
BLAST of DY305523 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 3.935e-44
Identity = 83/151 (54.97%), Postives = 115/151 (76.16%), Query Frame = 3
Query:  135 ATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK 587
            A      ++P     + +  SV++RLQ+EL +L+MSG D G++AFP+G+++F W+ T++G K T+YE L YKL+L FP DYP+KPP VKF T C+HPNVDQ GNICLDIL++ W+++YD RTILLS+QSLLGEPN  SPLN+ AA + +N+
Sbjct:   10 ANQVRQKERPRDMTTSKERHSVSKRLQQELRTLLMSG-DPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWSNQ 159          
BLAST of DY305523 vs. ExPASy Swiss-Prot
Match: UBE2C_MOUSE (Ubiquitin-conjugating enzyme E2 C OS=Mus musculus GN=Ube2c PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.953e-43
Identity = 86/129 (66.67%), Postives = 101/129 (78.29%), Query Frame = 3
Query:  198 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 584
            V +RLQ+ELM LM SG D G+SAFPE +++F W+GTI G  GT+YE L YKLSL FP  YP+  P VKF T C+HPNVD  GNICLDIL+DKWS+ YD RTILLSIQSLLGEPN +SPLN++AA L  N
Sbjct:   31 VGKRLQQELMILMTSG-DKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKN 158          
BLAST of DY305523 vs. ExPASy Swiss-Prot
Match: UBE2C_DROME (Ubiquitin-conjugating enzyme E2 C OS=Drosophila melanogaster GN=vih PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 2.551e-43
Identity = 89/160 (55.62%), Postives = 112/160 (70.00%), Query Frame = 3
Query:  111 NPTVENLRATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKE 590
            N + E         SK    S    D  +V++RL KELM+LMM+  + G+SAFP+GE+IF W+GTI G + T+Y G +Y+LSL FP  YP+  P VKF T CFHPNVD  G ICLDIL+DKWS+ YD RTILLSIQSLLGEPN ESPLN+ AA + N+++
Sbjct:    4 NISPEQSGGAGGGGSKHSDDSMPVKDNHAVSKRLHKELMNLMMAN-ERGISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVKFLTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPNNESPLNAQAAMMWNDQK 162          
The following BLAST results are available for this feature:
BLAST of DY305523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
UBC20_ARATH4.638e-5369.33Ubiquitin carrier protein E2 20 OS=Arabidopsis tha... [more]
UBC19_ARATH3.324e-5168.67Ubiquitin carrier protein E2 19 OS=Arabidopsis tha... [more]
UBE2C_DICDI2.634e-4867.42Probable ubiquitin-conjugating enzyme E2 C OS=Dict... [more]
UBE2C_XENLA1.001e-4762.25Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevi... [more]
UBE2C_MACFA7.930e-4559.33Ubiquitin-conjugating enzyme E2 C OS=Macaca fascic... [more]
UBE2C_HUMAN7.930e-4559.33Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens ... [more]
UBE2C_BOVIN1.036e-4459.33Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN... [more]
UBE2C_SPISO3.935e-4454.97Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]
UBE2C_MOUSE1.953e-4366.67Ubiquitin-conjugating enzyme E2 C OS=Mus musculus ... [more]
UBE2C_DROME2.551e-4355.63Ubiquitin-conjugating enzyme E2 C OS=Drosophila me... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1BB12RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305523 ID=DY305523; Name=DY305523; organism=Citrus sinensis; type=EST; length=1320bp
CAAAAACGCAATCAAGAATCATCTCATCGTCATCGTTAATCTTGATTATC
GTCATTGATCATCGGCCGTTGATCAGTGATTCTTCTTTGCTAATCATGGA
GGTGCGGCCAAATCCGACGGTTGAAAATTTACGTGCAACTGCCGCTGCTT
CGTCGAAGCAGCCTGTCTCTTCTCCTAACACCGTCGATACAACATCCGTT
ACTCAAAGGCTTCAGAAGGAATTGATGTCTCTTATGATGAGTGGAGGTGA
TCTTGGGGTCTCGGCCTTTCCTGAAGGCGAGAGCATTTTCACTTGGATTG
GCACAATCGAGGGTGGAAAGGGAACTATGTATGAGGGTTTATCATACAAA
CTTTCTTTGCGTTTTCCTCTGGATTATCCTTTCAAGCCACCCCAAGTCAA
GTTTGAAACTATGTGCTTCCATCCAAATGTTGATCAGTATGGCAACATAT
GCCTAGACATCCTTCAGGACAAGTGGTCTTCAGCGTATGATTGCAGAACG
ATTCTTTTGTCCATTCAAAGTTTACTGGGAGAGCCTAATCCAGAAAGCCC
TCTCAACAGCTATGCTGCAGCTCTGTTGAACAATAAGGAAGGTTGTATAC
ATATGTTCTCTTTATCCCCAGGTTATTAACCGTTTTTTCTTTAAATTTTA
TGTATAATGATCTGGATAAACTGTACTTTGACAATGTGGAAATGCCCATA
TTCGGTGTTCTTGCAAATTCAAATACTATTTGGGCCATTAACACCCATGA
AATCTTTGGTGGTGGATTGTGAACAAACTAGTATGTTGAACAATGATGTT
TCCTTTTATGATGAGGCCCGGGTTAAGGCCAAAGGGGCAAACCTAATTAC
TTGCTTTGGCGTTGAAGGTCTGGATTCCAAATTGAAAAGTTGAATCGGGA
GAGGATATAGTCCNAGCCTGCAATTGATCGGAACCCGGGGTTTATAAGAT
GAGAACAAAAGAATGTAGGTTTTTATTAGAAGTTATGCTAATAAATAAAA
CAAAGAAAAAAAAAAAAACTAAAATTGGCGANAAAATAAAAANAATACTA
TTTAACACTACANGCACAATAACAAATAGCCTATTGTAGGGGGCCTATNT
GTGATATTTCTATTGAGAGGCGAAANTGAGGAAAGCCCGGCTTCGAGTTC
GTGTTGAAAAAAAAAAAATGATATGGNAATAGGATTATTNAGAATTANAT
CGCGTAAACATCTATTNTGTATTNNGAAATAANGATAAATGTGAGGGTAN
TNAACTAGGAAGGGGGAGCTGTAATTCACGGGAAGCAACGTCNAATTNCA
AGAAATGNNTAAATTAAAAT
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