DY305516

Overview
NameDY305516
Unique NameDY305516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1260
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305516_ssr47 microsatellite DY305516_ssr47:47..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY305516 vs. ExPASy Swiss-Prot
Match: UMPK_ARATH (Uridylate kinase OS=Arabidopsis thaliana GN=PYR6 PE=1 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 1.137e-85
Identity = 154/183 (84.15%), Postives = 171/183 (93.44%), Query Frame = 1
Query:  199 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIXKRFKVFLKSSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEKAAA 747
            LGGPGSGKGTQCA IVEH+GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA++E+GNDKFLIDGFPRNEENRAAFE VT+IEP+FVLFFDC EEEME+R+L RNQGREDDN+ETI KRFKVFL+SSLPV+ YYEAKGKVRKI+AAKP+  VF+ VKA+F+P+ EK  A
Sbjct:   20 LGGPGSGKGTQCAYIVEHYGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAIQENGNDKFLIDGFPRNEENRAAFEKVTEIEPKFVLFFDCPEEEMEKRLLGRNQGREDDNIETIRKRFKVFLESSLPVIHYYEAKGKVRKINAAKPIEAVFEEVKAIFSPEAEKVEA 202          
BLAST of DY305516 vs. ExPASy Swiss-Prot
Match: KAD_PRUAR (Adenylate kinase OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 4.073e-59
Identity = 109/176 (61.93%), Postives = 138/176 (78.41%), Query Frame = 1
Query:  199 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIXKRFKVFLKSSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 726
            LGGPGSGKGTQCA IVE FG+TH+SAGDLLR EI SGS  G++I + I+EGKIVPS+VT++L+QK ME S N KFLIDGFPR+EENR AFE     EP+ VLFFDC E+EM +R+LNRNQGR DDN++TI KR ++F + + PV+ YY  +GK+ KI+A   V E+F+ V+ +F P
Sbjct:   53 LGGPGSGKGTQCAKIVEAFGFTHVSAGDLLRREIASGSAYGSVILSTIREGKIVPSQVTVELIQKEMESSDNYKFLIDGFPRSEENRKAFEQTIGAEPDVVLFFDCPEQEMVKRVLNRNQGRVDDNIDTIKKRLEIFDELNWPVINYYSQRGKLHKINAVGTVDEIFEKVRPIFAP 228          
BLAST of DY305516 vs. ExPASy Swiss-Prot
Match: KCY_CHICK (UMP-CMP kinase OS=Gallus gallus GN=CMPK1 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.503e-45
Identity = 99/184 (53.80%), Postives = 127/184 (69.02%), Query Frame = 1
Query:  199 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK-SGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-----SGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIXKRFKVFLKSSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 720
            LGGPG+GKGTQCA IVE +GYTHLSAGDLLR E K  GS+ G +I+N IKEG+IVP E+TI LL++AM++     S  +KFLIDGFPRNE+N   +      K +  FVLFFDC  E    R L R  + GR DDN E++ KR   +L+S+ P++  YE  GKVR++DA+K V EVF+ V  +F
Sbjct:    9 LGGPGAGKGTQCARIVEKYGYTHLSAGDLLRDERKRPGSQYGELIENYIKEGEIVPVEITISLLKRAMDQTMAANSQKNKFLIDGFPRNEDNLQGWNKTMDGKADVSFVLFFDCDNEICIGRCLERGKSSGRSDDNRESLEKRIHTYLQSTRPIIDLYERMGKVRRVDASKSVDEVFEKVVQIF 192          
BLAST of DY305516 vs. ExPASy Swiss-Prot
Match: KCY_XENLA (UMP-CMP kinase OS=Xenopus laevis GN=cmpk1 PE=2 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 1.962e-45
Identity = 97/184 (52.72%), Postives = 127/184 (69.02%), Query Frame = 1
Query:  199 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAME-----ESGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIXKRFKVFLKSSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 720
            LGGPG+GKGTQC  IV+ +GYTHLSAGDLLR E K   S+ G +I++ I++GKIVP E+TI LLQ+AME     ++   KFLIDGFPRNE+N   +E     K +  FVLFFDC  E    R L R +  GR DDN E++ KR + +L+S+ P++  YE +GKVRK+DA+K V EVF  V+ +F
Sbjct:    9 LGGPGAGKGTQCERIVQKYGYTHLSAGDLLRDERKKPDSQYGELIESYIRDGKIVPVEITISLLQRAMERTMAFDANKHKFLIDGFPRNEDNLQGWERTMNGKADVSFVLFFDCDNETCIERCLERGKSSGRSDDNRESLEKRIQTYLQSTRPIIDLYEKRGKVRKVDASKSVDEVFTKVQNIF 192          
BLAST of DY305516 vs. ExPASy Swiss-Prot
Match: KCY_DICDI (Cytidylate kinase OS=Dictyostelium discoideum GN=pyrK PE=1 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 1.962e-45
Identity = 96/178 (53.93%), Postives = 126/178 (70.79%), Query Frame = 1
Query:  199 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIXKRFKVFLKSSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 720
            LGGPGSGKGTQCANIV  FG+ HLSAGDLLR E +SGS++G MI  MIK G+IVPS VT+KLL+ A++ +    FL+DGFPRNEEN  ++E   K  ++ +FVLFFDC EE M +R+L R +  GR DDN+E+I KRF  F   +  V+ +Y    KV+ I A + V EV++ V+ +F
Sbjct:   13 LGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLF 190          
BLAST of DY305516 vs. ExPASy Swiss-Prot
Match: KCY_XENTR (UMP-CMP kinase OS=Xenopus tropicalis GN=cmpk1 PE=2 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 1.661e-44
Identity = 97/184 (52.72%), Postives = 128/184 (69.57%), Query Frame = 1
Query:  199 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES----GND-KFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIXKRFKVFLKSSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 720
            LGGPG+GKGTQC  IV+ +GYTHLSAGDLLR E K   S+ G +I++ I++G+IVP E+TI LLQ+AME++    GN  KFLIDGFPRNE+N   +E     K +  FVLFFDC  E    R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKV+K+DA+K V EVF  V+ +F
Sbjct:    9 LGGPGAGKGTQCERIVQKYGYTHLSAGDLLRDERKKPDSQYGELIESYIRDGRIVPVEITISLLQRAMEQTMALDGNKHKFLIDGFPRNEDNLQGWERTMNGKADVSFVLFFDCDNETCIERCLERGKSSGRSDDNRESLEKRIQTYLQSTRPIIDLYEKTGKVKKVDASKSVDEVFTKVQDIF 192          
BLAST of DY305516 vs. ExPASy Swiss-Prot
Match: KCY_HUMAN (UMP-CMP kinase OS=Homo sapiens GN=CMPK1 PE=1 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 3.701e-44
Identity = 96/184 (52.17%), Postives = 127/184 (69.02%), Query Frame = 1
Query:  199 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-----GNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIXKRFKVFLKSSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 720
            LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IKEGKIVP E+TI LL++ M+++       +KFLIDGFPRN++N   +      K +  FVLFFDC+ E    R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKV+KIDA+K V EVFD V  +F
Sbjct:    9 LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIF 192          
BLAST of DY305516 vs. ExPASy Swiss-Prot
Match: KCY_BOVIN (UMP-CMP kinase OS=Bos taurus GN=CMPK1 PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 3.701e-44
Identity = 96/184 (52.17%), Postives = 127/184 (69.02%), Query Frame = 1
Query:  199 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-----GNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIXKRFKVFLKSSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 720
            LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IK+GKIVP E+TI LL++ M+++       +KFLIDGFPRN++N   +      K +  FVLFFDC+ E    R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKVRKIDA+K V EVFD V  +F
Sbjct:    9 LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVRKIDASKSVDEVFDEVVKIF 192          
BLAST of DY305516 vs. ExPASy Swiss-Prot
Match: KCY_DANRE (UMP-CMP kinase OS=Danio rerio GN=cmpk1 PE=2 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 6.313e-44
Identity = 98/188 (52.13%), Postives = 131/188 (69.68%), Query Frame = 1
Query:  199 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-----GNDKFLIDGFPRNEENRAAF--EAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIXKRFKVFLKSSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD 732
            LGGPG+GKGTQCA IVE++ YTHLSAGDLLR E  ++ SE G +I + IKEGKIVP ++TI LL+KAMEE+        +FLIDGFPRN++N   +  E   K + +FVLFFDCS E    R L R  + GR DDN E++ KR + +L+S+ P+++ YE +GKV++IDA++ V EVF  VK +    D
Sbjct:    9 LGGPGAGKGTQCARIVENYSYTHLSAGDLLREERSRTDSEFGQLIDSYIKEGKIVPVQITINLLRKAMEETMKADEKKFRFLIDGFPRNQDNLQGWNTEMDGKADVKFVLFFDCSNEVCIDRCLERGKSSGRTDDNRESLEKRIQTYLQSTRPIIELYEKQGKVQRIDASRSVDEVFADVKNILEKDD 196          
BLAST of DY305516 vs. ExPASy Swiss-Prot
Match: KCY_PIG (UMP-CMP kinase OS=Sus scrofa GN=CMPK1 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 8.245e-44
Identity = 95/184 (51.63%), Postives = 127/184 (69.02%), Query Frame = 1
Query:  199 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-----GNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIXKRFKVFLKSSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 720
            LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IK+GKIVP E+TI LL++ M+++       +KFLIDGFPRN++N   +      K +  FVLFFDC+ E    R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKV+KIDA+K V EVFD V  +F
Sbjct:    9 LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVKIF 192          
The following BLAST results are available for this feature:
BLAST of DY305516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
UMPK_ARATH1.137e-8584.15Uridylate kinase OS=Arabidopsis thaliana GN=PYR6 P... [more]
KAD_PRUAR4.073e-5961.93Adenylate kinase OS=Prunus armeniaca PE=2 SV=1[more]
KCY_CHICK1.503e-4553.80UMP-CMP kinase OS=Gallus gallus GN=CMPK1 PE=2 SV=1[more]
KCY_XENLA1.962e-4552.72UMP-CMP kinase OS=Xenopus laevis GN=cmpk1 PE=2 SV=... [more]
KCY_DICDI1.962e-4553.93Cytidylate kinase OS=Dictyostelium discoideum GN=p... [more]
KCY_XENTR1.661e-4452.72UMP-CMP kinase OS=Xenopus tropicalis GN=cmpk1 PE=2... [more]
KCY_HUMAN3.701e-4452.17UMP-CMP kinase OS=Homo sapiens GN=CMPK1 PE=1 SV=3[more]
KCY_BOVIN3.701e-4452.17UMP-CMP kinase OS=Bos taurus GN=CMPK1 PE=2 SV=2[more]
KCY_DANRE6.313e-4452.13UMP-CMP kinase OS=Danio rerio GN=cmpk1 PE=2 SV=2[more]
KCY_PIG8.245e-4451.63UMP-CMP kinase OS=Sus scrofa GN=CMPK1 PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM1BB03RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305516 ID=DY305516; Name=DY305516; organism=Citrus sinensis; type=EST; length=1260bp
GTGGCAATTGGCATCCCTCTGCCTTCTTTCTTTCCCTCCATATTCTTCTC
TCTCTCTCCAAACAAAACAACGCTCGCAATTCGCTAAGATCGGTTATTCA
GACTGAGTTAGTTGGCGCTGATGGGAACTGTGGTTGAAACTCCTGTCAAG
GAAGCAGATGCTACCGTAACTGTGAAGAAGCCCACTGTTGTTTTTGTTTT
GGGTGGACCAGGCAGTGGAAAAGGAACCCAGTGCGCAAACATTGTTGAAC
ACTTTGGATACACCCATCTCAGTGCTGGTGATCTTCTCAGAGCCGAAATC
AAATCTGGCTCTGAAAATGGAACCATGATTCAGAACATGATTAAAGAGGG
AAAAATCGTTCCTTCAGAGGTCACAATTAAGCTTCTCCAAAAAGCAATGG
AGGAAAGTGGAAATGATAAATTTCTCATCGATGGTTTTCCCAGGAACGAG
GAAAATCGTGCTGCATTTGAAGCTGTTACCAAAATTGAGCCAGAATTCGT
TCTGTTTTTTGACTGTTCTGAGGAGGAGATGGAGAGGCGCATTTTGAATA
GGAATCAGGGAAGAGAAGATGATAACGTTGAGACAATTANGAAGCGGTTT
AAGGTTTTCTTAAAATCTAGTCTCCCTGTGGTTCAATATTATGAAGCTAA
GGGTAAAGTTCGGAAGATTGATGCTGCAAAGCCTGTTGCAGAGGTTTTTG
ATGCTGTTAAAGCTGTTTTTACCCCAAAAGATGAGAAGGCTGCTGCTTAG
GTCCTCTCTGTCCAGAGTATCAGATTAAATATCAAAGTGGTGGTAATGGT
GGTGGCTGCTGCCTAATGTTGTAATTTATAATAATGAGGTTATTATGTCA
CATGTTTTAAAAAAATGGTCAATAAGGTCCAGAGGGGATCATGAAATTTA
TTCCTGTTGTCCCAAGTAATCGGGGGTAAGAAAATGTGAATAGAAGAATA
GGAAATAAAATAAGACCAGGTAGGGCTTAAAGAAAAAATAAAAAAAAGAA
AAAACTCTAGGGGGGGGGCGGGTGCCCGACTCCCCACTTAAATGAGACGT
GAAAATTATCAATGCCTGTTTGTTTCACTTTAGAGTAGGGGGAAGAACAC
GGGCAGTAAACGAAGTAATATCGCGAACACGCCCAATACCCCTCTGTTAC
GCCTCCGTATNAAGAAGTAAGACGAAGACGATCGCGACCGAAATAAGATC
GCAGCTCATCTCTAACTANATGTGTAATCATGCCGCCATGCGTTGGTGGA
NATGAGGGGA
back to top