DY305513

Overview
NameDY305513
Unique NameDY305513
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1232
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10C_ARATH (20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2)

HSP 1 Score: 348.977 bits (894), Expect = 3.436e-95
Identity = 180/253 (71.15%), Postives = 206/253 (81.42%), Query Frame = 1
Query:  121 MATAQLTASSIKVPARSLTSFDGLRPSSVKFASVG-GAPSQRSFRRLXXXXXXXXXPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVLS 876
            MA  QLTAS + + ARSL S DGLR SSVKF+S+  G   Q  FRRL         PKYTSIKPLGDRVLVKIK  EEKT GGI LPSTAQ+KPQ GEVVAVGEG+T+GK K+DI+V  G Q+IYSKYAGTE+EFN   HLIL+EDD+VGILET++IKDLKPLNDRVFIKVAEAEE TAGGLLLTE +KEKPSIG VIAVGPG LDEEG   PL ++ G+TV+YSKYAGND +G++G+NYIALRAS+V A+LS
Sbjct:    1 MAATQLTASPVTMSARSLASLDGLRASSVKFSSLKPGTLRQSQFRRLVVKAASVVAPKYTSIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDITVPTGAQIIYSKYAGTEVEFNDVKHLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVSTGSTVLYSKYAGNDFKGKDGSNYIALRASDVMAILS 253          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10C_SPIOL (20 kDa chaperonin, chloroplastic OS=Spinacia oleracea GN=CPN21 PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 2.237e-78
Identity = 149/256 (58.20%), Postives = 190/256 (74.22%), Query Frame = 1
Query:  121 MATAQLTASSIKVPARSLTSFDGLRPSS----VKFASVGGAPSQRSFRRLXXXXXXXXXPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVLS 876
            MA   LT++S  +   +L SF+GLR +S    +  +    + + RSFR L          KYTS+KPLGDRVL+K K VEEKT  GIFLP+ AQ KPQ+GEVVA+G GK VG  KL ++VK G +V+YSKY GTE+E +G++HLI++EDD++GILETD++KDLKPLNDR+ IKVAE E  T+GGLLL E+SKEKPS G V+A GPG LDEEGNR PL +  GNTV+YSKYAGND +G +G++Y+ LR S+V AVLS
Sbjct:    1 MAATHLTSTS-SLTINTLPSFEGLRSASGISKINVSVAYPSFTSRSFRGLVVRAASITTSKYTSVKPLGDRVLIKTKIVEEKTTSGIFLPTAAQKKPQSGEVVAIGSGKKVGDKKLPVAVKTGAEVVYSKYTGTEIEVDGSSHLIVKEDDIIGILETDDVKDLKPLNDRLLIKVAEVENKTSGGLLLAESSKEKPSFGTVVATGPGVLDEEGNRIPLPVCSGNTVLYSKYAGNDFKGVDGSDYMVLRVSDVMAVLS 255          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_RHOMR (10 kDa chaperonin OS=Rhodothermus marinus GN=groS PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 7.816e-23
Identity = 48/95 (50.53%), Postives = 72/95 (75.79%), Query Frame = 1
Query:  301 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDE 585
            IKPL DRV++K +  EEKT+ G+++P TA+ KPQ G V+AVG G+    TK+++SVK G +V+Y KYAGTE+  +G  +LI+RE D++GI+E ++
Sbjct:    6 IKPLSDRVVIKPEPPEEKTESGLYIPDTAKEKPQRGTVIAVGPGRVENGTKIEMSVKEGDKVLYGKYAGTEITIDGEEYLIMRETDILGIIEEEK 100          

HSP 2 Score: 75.0998 bits (183), Expect = 9.576e-13
Identity = 38/93 (40.86%), Postives = 59/93 (63.44%), Query Frame = 1
Query:  595 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            +KPL+DRV IK    EE T  GL + + +KEKP  G VIAVGPG + E G +  +S+  G+ V+Y KYAG ++   +G  Y+ +R +++  ++
Sbjct:    6 IKPLSDRVVIKPEPPEEKTESGLYIPDTAKEKPQRGTVIAVGPGRV-ENGTKIEMSVKEGDKVLYGKYAGTEIT-IDGEEYLIMRETDILGII 96          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_THEPX (10 kDa chaperonin OS=Thermoanaerobacter sp. (strain X514) GN=groS PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.333e-22
Identity = 50/92 (54.35%), Postives = 70/92 (76.09%), Query Frame = 1
Query:  301 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 576
            +KPLGDRV+VK+   EE T GG+ LP TA+ KPQ GEVVAVG G+ +   K+++ VK G +VI+SKYAGTE++ +G  +L+LRE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94          

HSP 2 Score: 78.9518 bits (193), Expect = 6.632e-14
Identity = 41/93 (44.09%), Postives = 62/93 (66.67%), Query Frame = 1
Query:  595 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            LKPL DRV +KV +AEE T GG++L   +KEKP  G V+AVG G    +G +  L +  G+ V++SKYAG +++  +G  Y+ LR S++ A++
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQY-IDGKKVELEVKVGDRVIFSKYAGTEVK-LDGEEYLLLRESDILAII 93          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_THEP3 (10 kDa chaperonin OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=groS PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.333e-22
Identity = 50/92 (54.35%), Postives = 70/92 (76.09%), Query Frame = 1
Query:  301 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 576
            +KPLGDRV+VK+   EE T GG+ LP TA+ KPQ GEVVAVG G+ +   K+++ VK G +VI+SKYAGTE++ +G  +L+LRE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94          

HSP 2 Score: 78.9518 bits (193), Expect = 6.632e-14
Identity = 41/93 (44.09%), Postives = 62/93 (66.67%), Query Frame = 1
Query:  595 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            LKPL DRV +KV +AEE T GG++L   +KEKP  G V+AVG G    +G +  L +  G+ V++SKYAG +++  +G  Y+ LR S++ A++
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQY-IDGKKVELEVKVGDRVIFSKYAGTEVK-LDGEEYLLLRESDILAII 93          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_THEBR (10 kDa chaperonin OS=Thermoanaerobacter brockii GN=groS PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.333e-22
Identity = 50/92 (54.35%), Postives = 70/92 (76.09%), Query Frame = 1
Query:  301 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 576
            +KPLGDRV+VK+   EE T GG+ LP TA+ KPQ GEVVAVG G+ +   K+++ VK G +VI+SKYAGTE++ +G  +L+LRE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGEYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94          

HSP 2 Score: 78.9518 bits (193), Expect = 6.632e-14
Identity = 41/93 (44.09%), Postives = 62/93 (66.67%), Query Frame = 1
Query:  595 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            LKPL DRV +KV +AEE T GG++L   +KEKP  G V+AVG G    +G +  L +  G+ V++SKYAG +++  +G  Y+ LR S++ A++
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGEY-IDGKKVELEVKVGDRVIFSKYAGTEVK-LDGEEYLLLRESDILAII 93          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_NATTJ (10 kDa chaperonin OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=groS PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 5.066e-22
Identity = 49/94 (52.13%), Postives = 72/94 (76.60%), Query Frame = 1
Query:  298 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 576
            ++KPLGDR+++KI   EEKT+ GI LP  A+ KPQ GEVVAVG GKT+   +K++  VK G +V+YSK+AG E+E +G  +LI+R+DD++ ++E
Sbjct:    2 NLKPLGDRIVIKILEAEEKTESGIVLPEKAKEKPQEGEVVAVGSGKTLDDGSKVEPEVKAGDKVVYSKFAGNEVEVDGEEYLIMRQDDILAVIE 95          

HSP 2 Score: 83.1889 bits (204), Expect = 3.517e-15
Identity = 40/94 (42.55%), Postives = 64/94 (68.09%), Query Frame = 1
Query:  592 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            +LKPL DR+ IK+ EAEE T  G++L E +KEKP  G V+AVG G   ++G++    +  G+ V+YSK+AGN+++  +G  Y+ +R  ++ AV+
Sbjct:    2 NLKPLGDRIVIKILEAEEKTESGIVLPEKAKEKPQEGEVVAVGSGKTLDDGSKVEPEVKAGDKVVYSKFAGNEVE-VDGEEYLIMRQDDILAVI 94          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_DESVV (10 kDa chaperonin OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=groS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.474e-21
Identity = 50/94 (53.19%), Postives = 69/94 (73.40%), Query Frame = 1
Query:  298 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 576
            ++KPL DRVLVK    EEKT GG+++P TA+ KP  GEVVA G GKT    KL  ++VK G  V+++KYAGTE++ +G  HL++REDD++ I+E
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKAGDMVLFNKYAGTEIKIDGVEHLVMREDDILAIIE 95          

HSP 2 Score: 84.7297 bits (208), Expect = 1.209e-15
Identity = 38/94 (40.43%), Postives = 65/94 (69.15%), Query Frame = 1
Query:  592 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            +LKPLNDRV +K  E+EE TAGGL + + +KEKPS G V+A GPG   ++G    +++  G+ V+++KYAG +++  +G  ++ +R  ++ A++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKAGDMVLFNKYAGTEIK-IDGVEHLVMREDDILAII 94          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_DESVH (10 kDa chaperonin OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=groS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.474e-21
Identity = 50/94 (53.19%), Postives = 69/94 (73.40%), Query Frame = 1
Query:  298 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 576
            ++KPL DRVLVK    EEKT GG+++P TA+ KP  GEVVA G GKT    KL  ++VK G  V+++KYAGTE++ +G  HL++REDD++ I+E
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKAGDMVLFNKYAGTEIKIDGVEHLVMREDDILAIIE 95          

HSP 2 Score: 84.7297 bits (208), Expect = 1.209e-15
Identity = 38/94 (40.43%), Postives = 65/94 (69.15%), Query Frame = 1
Query:  592 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            +LKPLNDRV +K  E+EE TAGGL + + +KEKPS G V+A GPG   ++G    +++  G+ V+++KYAG +++  +G  ++ +R  ++ A++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKAGDMVLFNKYAGTEIK-IDGVEHLVMREDDILAII 94          
BLAST of DY305513 vs. ExPASy Swiss-Prot
Match: CH10_DESHY (10 kDa chaperonin OS=Desulfitobacterium hafniense (strain Y51) GN=groS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.474e-21
Identity = 49/92 (53.26%), Postives = 69/92 (75.00%), Query Frame = 1
Query:  298 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 573
            +IKPLGDRV++K   +EEKT  GI +P TA+ KPQ GEVVAVG GK     ++ + VK G +VIYSKYAGTE++++G  +LIL+E D++ ++
Sbjct:    2 NIKPLGDRVVIKALPMEEKTKSGIIMPDTAKEKPQEGEVVAVGPGKMEKGERIVLDVKVGDRVIYSKYAGTEVKYDGQEYLILKETDILAVI 93          

HSP 2 Score: 79.7221 bits (195), Expect = 3.888e-14
Identity = 40/94 (42.55%), Postives = 63/94 (67.02%), Query Frame = 1
Query:  592 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDLQGREGTNYIALRASEVEAVL 873
            ++KPL DRV IK    EE T  G+++ + +KEKP  G V+AVGPG + E+G R  L +  G+ V+YSKYAG +++  +G  Y+ L+ +++ AV+
Sbjct:    2 NIKPLGDRVVIKALPMEEKTKSGIIMPDTAKEKPQEGEVVAVGPGKM-EKGERIVLDVKVGDRVIYSKYAGTEVK-YDGQEYLILKETDILAVI 93          
The following BLAST results are available for this feature:
BLAST of DY305513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 493
Match NameE-valueIdentityDescription
CH10C_ARATH3.436e-9571.1520 kDa chaperonin, chloroplastic OS=Arabidopsis th... [more]
CH10C_SPIOL2.237e-7858.2020 kDa chaperonin, chloroplastic OS=Spinacia olera... [more]
CH10_RHOMR7.816e-2350.5310 kDa chaperonin OS=Rhodothermus marinus GN=groS ... [more]
CH10_THEPX1.333e-2254.3510 kDa chaperonin OS=Thermoanaerobacter sp. (strai... [more]
CH10_THEP31.333e-2254.3510 kDa chaperonin OS=Thermoanaerobacter pseudethan... [more]
CH10_THEBR1.333e-2254.3510 kDa chaperonin OS=Thermoanaerobacter brockii GN... [more]
CH10_NATTJ5.066e-2252.1310 kDa chaperonin OS=Natranaerobius thermophilus (... [more]
CH10_DESVV1.474e-2153.1910 kDa chaperonin OS=Desulfovibrio vulgaris subsp.... [more]
CH10_DESVH1.474e-2153.1910 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]
CH10_DESHY1.474e-2153.2610 kDa chaperonin OS=Desulfitobacterium hafniense ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1BA12RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305513 ID=DY305513; Name=DY305513; organism=Citrus sinensis; type=EST; length=1232bp
GGTTTTATCTTCTCGACTCTTCTTCAAATTTCAACTAGAAACCTTATCAA
ACTACTCGCTCGCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCT
CTCTCTGCATCTGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCA
ATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTC
TTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCC
GTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCA
ATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGA
GAAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTC
AAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACT
AAACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTA
TGCAGGGACTGAGTTGGAGTTCAATGGCGCAAATCATCTCATATTGAGGG
AGGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAG
CCCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAGGAGACAAC
TGCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAGGAGAAACCTTCCATTG
GAATGGTCATTGCTGTTGGACCCGGTCCTCTAGATGAGGAAGGTAATAGG
AAACCTCTATCCATTGCTCCAGGGAACACGGTGATGTATTCCAAGTATGC
AGGGAATGACCTTCAAGGCAGGGAGGGAACCAACTACATTGCTTTAAGAG
CTTCTGAAGTGGAGGCTGTGCTCTCTTAATTGCCGGTGGTTAACTGGACC
AAGGTTTAAAGGTATTAAGGAATGGAATTTATGGGTGAGTTGCCTCCAGG
GAAACGGAATTTTAAAGGTAACTTAATTGGAACAAAAAAAATTGCAGCTT
TGGATCAACGAATTGGCGGGTTGGTTTTTTGGCTAAAAAAAAAAAAAAAG
GGGGGGGCCCGGGACCCCCAATTCCCCCCAAAAGGGGAGCCAAAAAAAAA
TTCCCGGGGGCCGCGTCGTTTTTAAAAAGGCGGGGGCGGGGGGAAAAACC
CCGGGGGGGTTTACCCCAAAATAAAAATACCCCTCGGGGGCAGCCACACC
CCCCCCCCCTTTTCCCCCCACCGCGGGTGGGG
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