DY305510

Overview
NameDY305510
Unique NameDY305510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1277
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305510_ssr60 microsatellite DY305510_ssr60:60..71. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_PRUAR (60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1)

HSP 1 Score: 407.527 bits (1046), Expect = 8.495e-113
Identity = 229/346 (66.18%), Postives = 247/346 (71.39%), Query Frame = 3
Query:   72 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGHLWAVYCLD*IGF*EA**I*W*F**GFQEKKGLSAASC*NGQR*IG*DYNSEEVQSGVRANKN*GKEASNEK*TPSRT*NNKVFGLNPLAKKGPEKSSLLAE 1109
            RPL+TVQSLEGDMATD + TV LPDVMKASIRPDIV FVHSNISKNSRQPYAVS+KAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRY           PSLV+ARGHKIETVPE+PLVVSDS E VE+TSAALKVLKQIGAY+DAEKAKDS  IRPGKGKMRNRRYI+RKGPL+VY  EGAKLVKAFRNIPG               PGGHL          F +   I   F    ++K G            +    NS+EVQS V   +   K A  +K  P R   N +  LNP AK    + SLLAE
Sbjct:    9 RPLVTVQSLEGDMATDQTQTVALPDVMKASIRPDIVTFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAVPSLVLARGHKIETVPELPLVVSDSIEGVEETSAALKVLKQIGAYSDAEKAKDSHSIRPGKGKMRNRRYINRKGPLIVYGTEGAKLVKAFRNIPGIDIINVERLNLLKLAPGGHLGRFVVWTKSAFEKLDSIYGSFDKVSEKKNGYVLPRSKMVNADLARIINSDEVQSVVSPIQEGSKRAPLKK-NPLRI-LNTMLKLNPYAKTA-RRMSLLAE 351          
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4B_ARATH (60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=1 SV=2)

HSP 1 Score: 393.66 bits (1010), Expect = 1.269e-108
Identity = 221/348 (63.51%), Postives = 249/348 (71.55%), Query Frame = 3
Query:   72 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGHLWAVYCLD*IGF*EA**I*W*F**GFQEKKG--LSAASC*NGQR*IG*DYNSEEVQSGVRANKN*GKEASNEK*TPSRT*NNKVFGLNPLAKKGPEKSSLLAE 1109
            RPL+TVQ L+GDM+TD S+TV LPDVM A +RPDIV FVH+ IS NSRQPYAVS+KAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQ AFGNMCRGGRMFAPTKIWRRWHR++NVN KR+           P+LVMARGHKIE VPEMPLVVSDSAE+VEKTSAA+KVLKQIGAY DAEKAK+S GIRPGKGKMRNRRYISRKGPLVV+  EGAK+VKAFRN+PG               PGGHL          F +   I   F    ++KKG  L  A   N    +    NS+EVQS V   K+  K A  +K  P +   N +F LNP AK   ++ SLLAE
Sbjct:    8 RPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVFGTEGAKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNAD--LARIINSDEVQSVVNPIKDGSKRAVLKK-NPLKN-LNVMFKLNPYAKTA-KRMSLLAE 350          
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4A_ARATH (60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1)

HSP 1 Score: 391.734 bits (1005), Expect = 4.824e-108
Identity = 219/348 (62.93%), Postives = 248/348 (71.26%), Query Frame = 3
Query:   72 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGHLWAVYCLD*IGF*EA**I*W*F**GFQEKKG--LSAASC*NGQR*IG*DYNSEEVQSGVRANKN*GKEASNEK*TPSRT*NNKVFGLNPLAKKGPEKSSLLAE 1109
            RPL+T+Q+L+GDM+TD SSTV LPDVM A +RPDIV FVH+ IS NSRQPYAVS+KAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQ AFGNMCRGGRMFAPTKIWRRWHR++NVN KR+           P+LVMARGHKIE VPEMPLVVSDSAE+VEKTSAA+KVLKQIGAY DAEKAK+S GIRPGKGKMRNRRYISRKGPLVVY  EG+K+VKAFRN+PG               PGGHL          F +   I   F    ++KKG  L  A   N    +    NS+E+QS V   K   K A  +K  P +   N +  LNP AK   ++ SLLAE
Sbjct:    7 RPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVYGTEGSKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNAD--LARIINSDEIQSVVNPIKKDAKRAVLKK-NPLKN-LNVMLKLNPYAKTA-KRMSLLAE 349          
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4A_XENLA (60S ribosomal protein L4-A OS=Xenopus laevis GN=rpl4-A PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 5.724e-88
Identity = 144/246 (58.54%), Postives = 177/246 (71.95%), Query Frame = 3
Query:   72 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGHL 809
            RPLI+V S +G+    +   V +P V +A IRPDIV FVH+N+ KN+RQPYAVS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+L+M++GH+IE +PE+PLVV D  ES +KT  A+ +LK++ A+ D +K   SQ +R GKGKMRNRR I R+GP V+Y+ E   LVKAFRNIPG               PGGH+
Sbjct:    9 RPLISVYSEKGE---SSGKNVTMPAVFRAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSALAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCVIYN-ENNGLVKAFRNIPGITLLNVSKLNLLRLAPGGHV 250          

HSP 2 Score: 55.0694 bits (131), Expect = 5.724e-88
Identity = 29/78 (37.18%), Postives = 42/78 (53.85%), Query Frame = 1
Query:  811 GRFIVWTKSAFEKLDEFNGNFDKGSKRRKG*VLPRAKMVNAELARIITRKKCSLV*GQIKTEVKRPPMKNKPPQELEI 1044
            GRF +WT+SAF KLD+  G + K +K +    LP  KM N +L RI+  ++          +VKR  +K  P + L I
Sbjct:  251 GRFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRI 328          
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4B_XENLA (60S ribosomal protein L4-B (Fragment) OS=Xenopus laevis GN=rpl4-B PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 7.467e-88
Identity = 143/246 (58.13%), Postives = 177/246 (71.95%), Query Frame = 3
Query:   72 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGHL 809
            RPLI+V S +G+ +      V +P V KA IRPDIV FVH+N+ KN+RQPYAVS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+L+M++GH+IE +PE+PLVV D  ES +KT  A+ +LK++ A+ D +K   SQ +R GKGKMRNRR I R+GP V+Y+ E   ++KAFRNIPG               PGGH+
Sbjct:    4 RPLISVYSEKGETS---GKNVTMPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSALAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCVIYN-ENNGIIKAFRNIPGITLLNVSKLNLLRLAPGGHV 245          

HSP 2 Score: 55.0694 bits (131), Expect = 7.467e-88
Identity = 29/78 (37.18%), Postives = 42/78 (53.85%), Query Frame = 1
Query:  811 GRFIVWTKSAFEKLDEFNGNFDKGSKRRKG*VLPRAKMVNAELARIITRKKCSLV*GQIKTEVKRPPMKNKPPQELEI 1044
            GRF +WT+SAF KLD+  G + K +K +    LP  KM N +L RI+  ++          +VKR  +K  P + L I
Sbjct:  246 GRFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRI 323          
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_MOUSE (60S ribosomal protein L4 OS=Mus musculus GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 291.967 bits (746), Expect = 2.161e-87
Identity = 143/246 (58.13%), Postives = 176/246 (71.54%), Query Frame = 3
Query:   72 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGHL 809
            RPLI+V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH+IE VPE+PLVV D  E  +KT  A+++LK++ A+ D +K   SQ +R GKGKMRNRR I R+GP ++Y+ +   ++KAFRNIPG               PGGH+
Sbjct:    5 RPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVQLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNG-IIKAFRNIPGITLLNVSKLNILKLAPGGHV 246          

HSP 2 Score: 52.7582 bits (125), Expect = 2.161e-87
Identity = 27/78 (34.62%), Postives = 42/78 (53.85%), Query Frame = 1
Query:  811 GRFIVWTKSAFEKLDEFNGNFDKGSKRRKG*VLPRAKMVNAELARIITRKKCSLV*GQIKTEVKRPPMKNKPPQELEI 1044
            GRF +WT+SAF KLDE  G + K +  +    LP  KM+N +L+RI+   +        + ++ R  +K  P + L I
Sbjct:  247 GRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRI 324          
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_HUMAN (60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5)

HSP 1 Score: 290.812 bits (743), Expect = 2.819e-87
Identity = 143/246 (58.13%), Postives = 175/246 (71.14%), Query Frame = 3
Query:   72 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGHL 809
            RPLI+V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH+IE VPE+PLVV D  E  +KT  A+ +LK++ A+ D +K   SQ +R GKGKMRNRR I R+GP ++Y+ +   ++KAFRNIPG               PGGH+
Sbjct:    5 RPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNG-IIKAFRNIPGITLLNVSKLNILKLAPGGHV 246          

HSP 2 Score: 53.5286 bits (127), Expect = 2.819e-87
Identity = 27/78 (34.62%), Postives = 42/78 (53.85%), Query Frame = 1
Query:  811 GRFIVWTKSAFEKLDEFNGNFDKGSKRRKG*VLPRAKMVNAELARIITRKKCSLV*GQIKTEVKRPPMKNKPPQELEI 1044
            GRF +WT+SAF KLDE  G + K +  +    LP  KM+N +L+RI+   +        + ++ R  +K  P + L I
Sbjct:  247 GRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRI 324          
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_RAT (60S ribosomal protein L4 OS=Rattus norvegicus GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 291.197 bits (744), Expect = 3.678e-87
Identity = 143/246 (58.13%), Postives = 176/246 (71.54%), Query Frame = 3
Query:   72 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGHL 809
            RPLI+V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH +E VPE+PLVV D  ES +KT  A+++LK++ A+ D +K   SQ +R GKGKMRNRR I R+GP ++Y+ +   ++KAFRNIPG               PGGH+
Sbjct:    5 RPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHCVEEVPELPLVVEDKVESYKKTKEAVQLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNG-IIKAFRNIPGITLLNVSKLNILKLAPGGHV 246          

HSP 2 Score: 52.7582 bits (125), Expect = 3.678e-87
Identity = 27/78 (34.62%), Postives = 42/78 (53.85%), Query Frame = 1
Query:  811 GRFIVWTKSAFEKLDEFNGNFDKGSKRRKG*VLPRAKMVNAELARIITRKKCSLV*GQIKTEVKRPPMKNKPPQELEI 1044
            GRF +WT+SAF KLDE  G + K +  +    LP  KM+N +L+RI+   +        + ++ R  +K  P + L I
Sbjct:  247 GRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRI 324          
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_MACFA (60S ribosomal protein L4 OS=Macaca fascicularis GN=RPL4 PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 4.797e-87
Identity = 143/246 (58.13%), Postives = 174/246 (70.73%), Query Frame = 3
Query:   72 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGHL 809
            RPLI+V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH IE VPE+PLVV D  E  +KT  A+ +LK++ A+ D +K   SQ +R GKGKMRNRR I R+GP ++Y+ +   ++KAFRNIPG               PGGH+
Sbjct:    5 RPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHSIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNG-IIKAFRNIPGITLLNVSKLNILKLAPGGHV 246          

HSP 2 Score: 53.5286 bits (127), Expect = 4.797e-87
Identity = 27/78 (34.62%), Postives = 42/78 (53.85%), Query Frame = 1
Query:  811 GRFIVWTKSAFEKLDEFNGNFDKGSKRRKG*VLPRAKMVNAELARIITRKKCSLV*GQIKTEVKRPPMKNKPPQELEI 1044
            GRF +WT+SAF KLDE  G + K +  +    LP  KM+N +L+RI+   +        + ++ R  +K  P + L I
Sbjct:  247 GRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRI 324          
BLAST of DY305510 vs. ExPASy Swiss-Prot
Match: RL4_BOVIN (60S ribosomal protein L4 OS=Bos taurus GN=RPL4 PE=2 SV=3)

HSP 1 Score: 290.812 bits (743), Expect = 4.797e-87
Identity = 143/246 (58.13%), Postives = 175/246 (71.14%), Query Frame = 3
Query:   72 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXGPGGHL 809
            RPLI+V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH+IE VPE+PLVV D  E  +KT  A+ +LK++ A+ D +K   SQ +R GKGKMRNRR I R+GP ++Y+ +   ++KAFRNIPG               PGGH+
Sbjct:    5 RPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNG-IIKAFRNIPGITLLNVSKLNILKLAPGGHV 246          

HSP 2 Score: 52.7582 bits (125), Expect = 4.797e-87
Identity = 27/78 (34.62%), Postives = 42/78 (53.85%), Query Frame = 1
Query:  811 GRFIVWTKSAFEKLDEFNGNFDKGSKRRKG*VLPRAKMVNAELARIITRKKCSLV*GQIKTEVKRPPMKNKPPQELEI 1044
            GRF +WT+SAF KLDE  G + K +  +    LP  KM+N +L+RI+   +        + ++ R  +K  P + L I
Sbjct:  247 GRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMLNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRI 324          
The following BLAST results are available for this feature:
BLAST of DY305510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RL4_PRUAR8.495e-11366.1860S ribosomal protein L4 OS=Prunus armeniaca GN=RP... [more]
RL4B_ARATH1.269e-10863.5160S ribosomal protein L4-2 OS=Arabidopsis thaliana... [more]
RL4A_ARATH4.824e-10862.9360S ribosomal protein L4-1 OS=Arabidopsis thaliana... [more]
RL4A_XENLA5.724e-8858.5460S ribosomal protein L4-A OS=Xenopus laevis GN=rp... [more]
RL4B_XENLA7.467e-8858.1360S ribosomal protein L4-B (Fragment) OS=Xenopus l... [more]
RL4_MOUSE2.161e-8758.1360S ribosomal protein L4 OS=Mus musculus GN=Rpl4 P... [more]
RL4_HUMAN2.819e-8758.1360S ribosomal protein L4 OS=Homo sapiens GN=RPL4 P... [more]
RL4_RAT3.678e-8758.1360S ribosomal protein L4 OS=Rattus norvegicus GN=R... [more]
RL4_MACFA4.797e-8758.1360S ribosomal protein L4 OS=Macaca fascicularis GN... [more]
RL4_BOVIN4.797e-8758.1360S ribosomal protein L4 OS=Bos taurus GN=RPL4 PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1BA08RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305510 ID=DY305510; Name=DY305510; organism=Citrus sinensis; type=EST; length=1277bp
GAGCAACTCAACTCTCCCCCTTTCCCCATACCCCCCCAAAAAAAAACAAA
AAAGCTATGGCCGCCGCCGCCCGTCCTTTGATTACCGTCCAGTCTTTGGA
AGGTGACATGGCCACCGACGCAAGCTCCACCGTCCCTTTGCCCGACGTCA
TGAAGGCCTCTATCCGACCCGACATCGTGGGCTTTGTCCACTCTAACATC
TCCAAGAACAGTCGCCAGCCTTACGCCGTTTCCAGGAAGGCAGGGCACCA
GACCTCCGCCGAATCATGGGGTACCGGTCGCGCCGTCTCCCGTATTCCCC
GTGTCCCCGGAGGCGGTACCCACCGTGCCGGCCAGGGAGCCTTCGGTAAC
ATGTGTCGCGGTGGTCGCATGTTCGCTCCCACAAAGATCTGGCGCCGATG
GCACCGTAAGATCAACGTCAATCAGAAGCGATACGCCATCGTTTCCGCCA
TTGCCGCCTCCGCTGTCCCCTCACTTGTGATGGCCCGCGGTCACAAGATC
GAGACTGTTCCGGAAATGCCCCTGGTCGTCAGTGATTCCGCCGAGAGTGT
GGAGAAAACATCAGCTGCCCTTAAAGTTCTGAAGCAGATCGGTGCATATG
CTGACGCCGAGAAGGCGAAGGACAGCCAGGGGATTCGCCCTGGAAAGGGT
AAAATGAGAAATAGGCGTTACATTTCTCGCAAGGGCCCGCTTGTTGTGTA
CTCAGCCGAGGGTGCTAAGCTTGTCAAGGCTTTTAGGAACATTCCCGGTG
TTGAGGTTGTGAATGTTGAGAGATTGAACTTGTTGAAGCTGGGGCCGGGT
GGCCATCTTTGGGCGGTTTATTGTTTGGACTAAATCGGCTTTTGAGAAGC
TTGATGAATTTAATGGTAATTTTGATAAGGGTTCCAAGAGAAGAAAGGGT
TAAGTGCTGCCTCGTGCTAAAATGGTCAACGCTGAATTGGCTAGGATTAT
AACTCGGAAGAAGTGCAGTCTGGTGTAAGGGCAAATAAAAACTGAGGTAA
AGAGGCCTCCAATGAAAAATAAACCCCCTCAAGAACTTGAAATAACAAAG
TTTTCGGTTTGAACCCATTGGCAAAAAAGGGCCCCGAAAAAAGTTCTCTT
TTGGCGGAAGGGCAAAAAGGGTTTAAAGGCTAAAAAAAGGAAAAAACCCT
CACAAAAAAAAAAGGAAAACCCCCCTCCAAAAAAGGAGAGAGGAGCCTTC
CGGGGAAATAATAGGGGCCCTCCCGGGGGCGAGAGGCAGGGGGGGATAAA
CACAAAAAACGAAAAATATATTTCCCC
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