EY679048

Overview
NameEY679048
Unique NameEY679048
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679048 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.238e-45
Identity = 84/112 (75.00%), Postives = 97/112 (86.61%), Query Frame = 3
Query:   42 RLLAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYFSQGLRTYNLDNTINGLYIAPAFMDKLVVHITKNFMSLPNIKAPPYLGIRGG 377
            R++A VDE+KQT +DRWKGLA+D SDDQQDITRGKG VDSLFQAP G+GTH+A+MSSY+Y S GLR YN DN ++G YIAPAFMDKLVVHITKNFM+LPN+K P  LGI GG
Sbjct:   55 RIVASVDEDKQTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMKVPLILGIWGG 166          
BLAST of EY679048 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.058e-44
Identity = 85/108 (78.70%), Postives = 95/108 (87.96%), Query Frame = 3
Query:   54 EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYFSQGLRTYNLDNTINGLYIAPAFMDKLVVHITKNFMSLPNIKAPPYLGIRGG 377
            E+ E++QT +D+WKGLAYD SDDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDY SQGLR YNLDN ++G YIAPAFMDKLVVHITKNF+SLPNIK P  LGI GG
Sbjct:   59 EISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGG 166          
BLAST of EY679048 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.058e-44
Identity = 85/108 (78.70%), Postives = 95/108 (87.96%), Query Frame = 3
Query:   54 EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYFSQGLRTYNLDNTINGLYIAPAFMDKLVVHITKNFMSLPNIKAPPYLGIRGG 377
            E+ E++QT +D+WKGLAYD SDDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDY SQGLR YNLDN ++G YIAPAFMDKLVVHITKNF+SLPNIK P  LGI GG
Sbjct:   59 EISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGG 166          
BLAST of EY679048 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 3.511e-44
Identity = 86/108 (79.63%), Postives = 93/108 (86.11%), Query Frame = 3
Query:   54 EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYFSQGLRTYNLDNTINGLYIAPAFMDKLVVHITKNFMSLPNIKAPPYLGIRGG 377
            E+DE KQT QDRWKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y SQGLRTY+ DNT+ G YIAPAFMDKLVVHI+KNFM+LPNIK P  LGI GG
Sbjct:   50 ELDEGKQTDQDRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGG 157          
BLAST of EY679048 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 1.021e-43
Identity = 84/107 (78.50%), Postives = 94/107 (87.85%), Query Frame = 3
Query:   57 VDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYFSQGLRTYNLDNTINGLYIAPAFMDKLVVHITKNFMSLPNIKAPPYLGIRGG 377
            V E+KQT  DRW+GLAYD SDDQQDITRGKG VDS+FQAPMGTGTH+AV+SSY+Y SQGLR YNLDN ++G YIAPAFMDKLVVHITKNF++LPNIK P  LGI GG
Sbjct:   60 VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGG 166          
BLAST of EY679048 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.742e-43
Identity = 84/120 (70.00%), Postives = 96/120 (80.00%), Query Frame = 3
Query:   18 KGPFLRASRLLAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYFSQGLRTYNLDNTINGLYIAPAFMDKLVVHITKNFMSLPNIKAPPYLGIRGG 377
            K   +R      E+D+ KQT  DRWKGLAYD SDDQQDITRGKG VDSLFQAPMG GTH A++SSY+Y SQGLR Y+ DNT++GLYIAPAFMDKL+VH+ KNFM+LPNIK P  LGI GG
Sbjct:   35 KSRVVRVMAAKKELDQGKQTDADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGG 154          
BLAST of EY679048 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.129e-42
Identity = 89/132 (67.42%), Postives = 99/132 (75.00%), Query Frame = 3
Query:   33 RASRLLAE---VDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYFSQGLRTYNLDNTINGLYIAPAFMDKLVVHITKNFMSLPNIKAPPYLGIRGG*TTRKILP*ETCFR 419
            ++ R++AE   VD  KQT  DRWKGL  D SDDQQDITRGKG VDSLFQAP GTGTH+AV+ SY+Y SQGLR YNLDN ++G YIAPAFMDKLVVHITKNF+ LPNIK P  LGI GG    K    E  FR
Sbjct:   53 KSLRIVAEQIDVDPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFR 184          
BLAST of EY679048 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 4.291e-42
Identity = 81/108 (75.00%), Postives = 91/108 (84.26%), Query Frame = 3
Query:   54 EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYFSQGLRTYNLDNTINGLYIAPAFMDKLVVHITKNFMSLPNIKAPPYLGIRGG 377
            EVDE KQT +DRWKGLAYD SDDQQDITRGKG VD+LFQAPMG GTH AV+SSYDY SQG ++YN DN ++G YIA  FMDKLVVH++KNFM+LPNIK P  LGI GG
Sbjct:   55 EVDETKQTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGG 162          
BLAST of EY679048 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.249e-41
Identity = 86/132 (65.15%), Postives = 97/132 (73.48%), Query Frame = 3
Query:   33 RASRLLAE---VDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYFSQGLRTYNLDNTINGLYIAPAFMDKLVVHITKNFMSLPNIKAPPYLGIRGG*TTRKILP*ETCFR 419
            R+ R+ AE    D  KQT  DRWKGL  D SDDQQDI RGKG VDSLFQAP GTGTH+AV+ SY+Y SQGLR YN+DNT++G YIAP+FMDKLVVHITKNF+ LPNIK P  LG+ GG    K    E  FR
Sbjct:   53 RSLRIAAEEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKSFQCELVFR 184          
BLAST of EY679048 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.130e-41
Identity = 77/112 (68.75%), Postives = 93/112 (83.04%), Query Frame = 3
Query:   42 RLLAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYFSQGLRTYNLDNTINGLYIAPAFMDKLVVHITKNFMSLPNIKAPPYLGIRGG 377
            +++AE DE KQT++D+W+GLA+D SDDQQDITRGKG  D LFQAPMGTGTH AV+SSY+Y S GLR Y+ DN ++G YIAPAFMDKL VHI KNF++LPNIK P  LG+ GG
Sbjct:   52 KIVAEQDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGG 163          
The following BLAST results are available for this feature:
BLAST of EY679048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RCA_MALDO9.238e-4575.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR2.058e-4478.70Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR2.058e-4478.70Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ3.511e-4479.63Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH1.021e-4378.50Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU1.742e-4370.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC1.129e-4267.42Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE4.291e-4275.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC1.249e-4165.15Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA2.130e-4168.75Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-054-E07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679048 ID=EY679048; Name=EY679048; organism=Citrus sinensis; type=EST; length=844bp
CCATTTTTCCACCATCCAAAGGTCCCTTTCTGCGAGCTTCAAGATTACTC
GCTGAAGTCGATGAGAACAAGCAGACCAAGCAAGACAGATGGAAGGGCCT
TGCCTACGACGAATCTGATGACCAACAAGACATCACCAGAGGAAAAGGTG
CTGTGGACTCTCTGTTCCAAGCCCCCATGGGAACCGGAACTCACTATGCT
GTCATGAGTTCTTATGACTACTTCAGCCAAGGTCTCCGCACATACAACTT
GGACAACACGATCAACGGTCTCTACATTGCCCCTGCTTTCATGGACAAGC
TTGTTGTTCACATCACCAAGAACTTCATGTCCCTGCCCAACATCAAGGCT
CCTCCCTACTTGGGTATTAGGGGAGGATAAACGACAAGGAAAATCTTGCC
ATAGGAAACTTGTTTTCGCCTAGAATGGGCATCAAGCTAATTTATGAGGA
GAGACCGGAGAATAGTATAATGATATTGTCGGAAAATACTGATAAAGTAG
AACAAGGTAGAGGAACCTTGATAGGAGCTTTAACTTATTTGAAAGGAAAA
CAAGTACTGCCCTTGGTTCGAATACTCTGTTCCATTACTGGAAGAATTGG
AAAACAAAACCTGTATAAATGTAAACAACAAAATGGTAAAACAATATATA
ACATAACGTGGGATTTCAAAATTAAGTAAGAATTAACCAATATAAATGAC
AAACTATAACAATCTCCAGACCGATTGATATCACGACCCGTTATCATATC
CACAAAACGTCATAACTCTGATAACAATACGTATTATATTATTTACAAAC
TATACGAAAACATCAAATCATATATAACTCATGTATCATTATAT
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