DY305507

Overview
NameDY305507
Unique NameDY305507
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1234
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10183 contig Csv1_Contig10183:124..1357. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY305507 vs. ExPASy Swiss-Prot
Match: S35E3_HUMAN (Solute carrier family 35 member E3 OS=Homo sapiens GN=SLC35E3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.786e-12
Identity = 57/210 (27.14%), Postives = 101/210 (48.10%), Query Frame = -3
Query:  282 QTIKSVTPATPVVV------WRKYFDWRIWALWCPLLEEYCLHL*QSLVLICLDFVLHYLDVWPLPQKTILAESLLHGYKFDSINTVYYMAPFATMILSIPAVLLEG----SGIMDWLSTHPSPWS--ACIIIFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYIRHLLSQQ 875
            Q  K++T  TPV++      ++K F  RI     P+     L+    +    L  V   L V       +   +  H  + +S+  +YY AP ++ +L +     E      GI         PWS  A +++  SGV+AF +N SI+++I +T+ VT+N+ G+ K  + +   +++F++P+S   A+G   TL G   Y + +  LS+Q
Sbjct:  104 QLAKAMT--TPVIIAIQTFCYQKTFSTRIQLTLIPITLGVILNSYYDVKFNFLGMVFAALGVLVTSLYQVWVGAKQHELQVNSMQLLYYQAPMSSAMLLVAVPFFEPVFGEGGIF-------GPWSVSALLMVLLSGVIAFMVNLSIYWIIGNTSPVTYNMFGHFKFCITLFGGYVLFKDPLSINQALGILCTLFGILAYTHFK--LSEQ 302          
BLAST of DY305507 vs. ExPASy Swiss-Prot
Match: S35E3_MOUSE (Solute carrier family 35 member E3 OS=Mus musculus GN=Slc35e3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.207e-12
Identity = 58/211 (27.49%), Postives = 104/211 (49.29%), Query Frame = -3
Query:  282 QTIKSVTPATPVVV------WRKYFDWRIWALWCPLLEEYCLHL*QSLVLICLDFVLHYLDVWPLPQKTILAESLLHGYKFDSINTVYYMAPF--ATMILSIP---AVLLEGSGIMDWLSTHPSPWS--ACIIIFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYIRHLLSQQ 875
            Q  K++T  TPV++      ++K F  RI     P+     L+    +    L  V   L V       +   +  H  + +S+  +YY AP   A +++++P    V  EG GI         PWS  A +++  SG++AF +N SI+++I +T+ VT+N+ G+ K  + +   +++F++P+S    +G   TL G   Y + +  LS+Q
Sbjct:  104 QLAKAMT--TPVIIAIQTFWYQKRFSVRIQLTLIPITVGVILNSYYDVKFHSLGMVFAALGVVVTSLYQVWVGAKQHELQVNSMQLLYYQAPMSSAMLLVAVPFFEPVFAEG-GIF-------GPWSVSALLMVLLSGIIAFMVNLSIYWIIGNTSPVTYNMFGHFKFCITLCGGYILFKDPLSVNQGLGILCTLFGILTYTHFK--LSEQ 302          
BLAST of DY305507 vs. ExPASy Swiss-Prot
Match: S35E3_BOVIN (Solute carrier family 35 member E3 OS=Bos taurus GN=SLC35E3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.359e-11
Identity = 58/211 (27.49%), Postives = 104/211 (49.29%), Query Frame = -3
Query:  282 QTIKSVTPATPVVV------WRKYFDWRIWALWCPLLEEYCLHL*QSLVLICLDFVLHYLDVWPLPQKTILAESLLHGYKFDSINTVYYMAPF--ATMILSIP---AVLLEGSGIMDWLSTHPSPWS--ACIIIFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYIRHLLSQQ 875
            Q  K++T  TPV++      ++K F  +I     P+     L+    +    L  V   L V       +   +  H  + +S+  +YY AP   A +++++P    V  EG GI         PWS  A +++  SGV+AF +N SI+++I +T+ VT+N+ G+ K  + +   +++F++P+S    +G   TL G   Y + +  LS+Q
Sbjct:  104 QLAKAMT--TPVIIVIQTLCYKKTFSTKIRLTLIPITLGVILNSYYDVKFNFLGTVFAALGVLVTSLYQVWVGAKQHELQVNSMQLLYYQAPMSSAMLLVAVPFFEPVFAEG-GIF-------GPWSVSALLMVLLSGVIAFMVNLSIYWIIGNTSPVTYNMFGHFKFCITLFGGYVLFKDPLSINQGLGMLCTLFGILAYTHFK--LSEQ 302          
BLAST of DY305507 vs. ExPASy Swiss-Prot
Match: S35E3_DANRE (Solute carrier family 35 member E3 OS=Danio rerio GN=slc35e3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.963e-11
Identity = 49/195 (25.13%), Postives = 90/195 (46.15%), Query Frame = -3
Query:  300 TPVVV------WRKYFDWRIWALWCPLLEEYCLHL*QSLVLICLDFVLHYLDVWPLPQKTILAESLLHGYKFDSINTVYYMAPFATMILSIPAVLLE----GSGIMDWLSTHPSPWS--ACIIIFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYIR 848
            TPV++      +RK F  +I     P+     L+    +    +  +   L V       +   +  H  + +S+  +YY AP ++  L +     E      GI         PWS  A  ++  SGV+AF +N SI+++I +T+ VT+N+ G+ K  + +L  +++F++P+S    +G   TL G   Y + +
Sbjct:  111 TPVIIAIQTMYYRKTFSTKIKLTLVPITLGVILNSYYDVRFNLMGMIFATLGVLVTSLYQVWVGAKQHELQVNSMQLLYYQAPMSSAFLLVLVPFFEPLTGDGGIF-------GPWSFLALFMVLLSGVIAFLVNLSIYWIIGNTSPVTYNMFGHFKFCITLLGGYVLFQDPLSLNQGLGILCTLTGILAYTHFK 298          
The following BLAST results are available for this feature:
BLAST of DY305507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
S35E3_HUMAN2.786e-1227.14Solute carrier family 35 member E3 OS=Homo sapiens... [more]
S35E3_MOUSE6.207e-1227.49Solute carrier family 35 member E3 OS=Mus musculus... [more]
S35E3_BOVIN2.359e-1127.49Solute carrier family 35 member E3 OS=Bos taurus G... [more]
S35E3_DANRE8.963e-1125.13Solute carrier family 35 member E3 OS=Danio rerio ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM1BA04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305507 ID=DY305507; Name=DY305507; organism=Citrus sinensis; type=EST; length=1234bp
AAAGTTGAACCAGAAAATATTCTCCATTTCCGAGCGGAAAAAAAAAATTA
TATATTAAAAAAATCAAAGAGTTATCTACTTCGAAAATCACATAAGGGGA
ATTTTCTTTTTCTTTGCTTATGTTCCAATTTCTCTCTTCCTATAACCCCT
TTTCAAAAACCTTTAGAATTTCGAGCACGCCCTCATGACTAGACTTTATC
ATCTAATTTGTCATTTACAAGGGGAAGCAGTTCCATCAGATTTCTAGGAG
TACGGGGCGTTCTTGGAGTACCCGGGGGTGGCTGTTGAGAAAGCAAGTGC
CGGATATATCCATAGAATGTACAACCTATGAGTGTAATTGCACATCCAAC
AGCATTCATACCAGAGATTGGATTCCGGAATATCAACCATGAAACCAAGA
CAGCAACTGCAACCTTAAGATTTCCAGCAACATTGAATGTGACAGCAGTT
GTGGAGTGAATCACATAAAATATGGAAAAATTGAGACAGAATGCCAGCAC
CCCTGAGCTGAAAATAATGATGCAGGCAGACCAAGGAGAAGGATGGGTGC
TAAGCCAATCCATAATCCCACTCCCTTCGAGTAACACTGCAGGTATACTC
AAGATCATGGTTGCAAAAGGTGCCATGTAGTAGACTGTGTTAATGCTGTC
AAACTTGTAACCATGCAGCAGAGATTCTGCAAGGATAGTCTTTTGTGGAA
GTGGCCAGACATCCAAATAATGCAGCACAAAATCCAAACATATTAAAACT
AAGCTCTGTCACAGATGTAAGCAGTATTCCTCCAACAATGGGCACCAAAG
AGCCCATATTCGCCAGTCAAAATATTTTCTCCATACCACCACTGGGGTTG
CAGGAGTGACCGATTTTATTGTTTGCTAAAAGAAACAGGAATGGAGCGTA
AGCTCACATCCCCAACCCATGTTGATACGAAACACACGGGAATAGGAAAA
TCCTTCTCATCGATCTTCAAATTCAGGGTTTATCAGGGGTTAAGCTTCAA
AACCTGATTCCCAAAAAGGCCCCAGGAAAGAACCAAAGAAGGGGATACAG
GACCCCGCCAAAGGAACTTGAAATCTAATTTCGAAAAATATCCCTTGGTG
GGGGGAAAAAAACAGGGGAGTTAAAAAACCCCCCATTGGAAAAAAATGGC
TAGGGAAAAAATCGAGAAACCCCCCCCCCCGATAAACAAAAAACTCGCCC
CCCCTCTTTTTTTTTTTTTTCCTAAGAAGGAATT
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