DY305506

Overview
NameDY305506
Unique NameDY305506
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1250
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305506_ssr25 microsatellite DY305506_ssr25:25..46. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of DY305506 vs. ExPASy Swiss-Prot
Match: ZFP1_WHEAT (Zinc finger protein 1 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.809e-28
Identity = 91/247 (36.84%), Postives = 105/247 (42.51%), Query Frame = 2 
Query:  152 EANLHCLEPWTKRKRSKRPHNPPTEEEYLALCLVMLARGTTSTAVLTNCNTTTAASQRQKXXXXXXXXXXXXXDQKLLFKCSVCDKAFSSYQALGGHKASHR--KGSGGGDEHXXXXXXXXXXXXXXXGV-----------PNATGRTHECSICHKSFPTGQALGGHKRCHYDGG-----------EKXXXXXXXXXXXXXXXXXRDFDLNLPVLPEL------SPAFFVSXDDEVESPLPAKKPRL 802
            E + H L+ W KRKRS+R  +   EEE LALCL+ML+RG           +  A    +                   FKCSVC K+FSSYQALGGHK SHR  + S   D                                AT R H CSIC K FPTGQALGGHKR HYDGG                              R FDLN+P +PE               D+EV+SPL  KKPRL
Sbjct:   34 EESGHVLQGWAKRKRSRRQRS---EEENLALCLLMLSRGGKQRVQAPQPESFAAPVPAE-------------------FKCSVCGKSFSSYQALGGHKTSHRVKQPSPPSDAAAAPLVALPAVAAILPSAEPATSSTAASSDGATNRVHRCSICQKEFPTGQALGGHKRKHYDGGVGAAASSTELLAAAAAESEVGSTGNGSSAARAFDLNIPAVPEFVWRPCAKGKMMWEDDEEVQSPLAFKKPRL 258
The following BLAST results are available for this feature:
BLAST of DY305506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ZFP1_WHEAT2.809e-2836.84Zinc finger protein 1 OS=Triticum aestivum PE=2 SV... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM1BA03RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305506 ID=DY305506; Name=DY305506; organism=Citrus sinensis; type=EST; length=1250bp
GCACATTCTGAATCTGAAATTAAGCTCTCTCTCTCTCTCTCTCTCTCGCT
CTTTCACACTCACTCTTGGTTTTAGATTCAAAAGAGTAACGGAGATGGCA
CTGGAAGCTCTCAACTCTCCAACTACTTCGACGCCGCCGTTTCACTTCGA
AGAAGCTAATCTTCACTGCCTTGAGCCATGGACCAAACGCAAGCGCTCAA
AGCGTCCACACAATCCTCCAACTGAAGAAGAGTATCTCGCGCTCTGCCTC
GTCATGCTTGCACGTGGCACAACCTCCACCGCCGTCTTAACTAACTGCAA
CACGACCACCGCCGCCTCACAGCGACAGAAGTCTCCTGCTCTATCTACTG
CTGCAACGACGTCGTCCTCTGACCAGAAGCTTCTCTTCAAGTGCAGCGTG
TGCGACAAGGCGTTTTCTTCTTACCAAGCCTTGGGTGGTCACAAGGCCAG
CCACCGTAAGGGATCTGGGGGCGGCGATGAACACTCCGCATCCACTACCA
CCAACACCAACGCAACCGCCACGACCACCGGCGTACCGAACGCCACTGGT
AGGACCCACGAGTGTTCCATCTGTCACAAGTCCTTCCCCACTGGCCAAGC
CTTGGGCGGACACAAACGTTGTCACTACGATGGCGGCGAGAAGAGCGGAG
TGACGTCATCCGGATCCAGTAGCACTCACAGCCAAGTCAGCCACCGTGAC
TTTGACCTCAACCTCCCTGTCTTACCGGAGCTCTCCCCTGCTTTCTTCGT
CTCCNGTGATGACGAGGTGGAGAGTCCACTGCCGGCGAAAAAGCCCCGTC
TTTTCTTGCCCCCCAAATCCAAGTTTAATTACTTAATTGCCACTTTTTTT
TTTTGTTTTTGGCTACTTTTAGGATGTTAAATTTAGGCAATTTATTTCGT
GGATTTCTTTCTGTTACTTGCGTCAGTGACTGATTTTATTGTGTACCTAA
GCCAAAAAAAAAAAAAAAACTCGAGGGGGGGGCCGGGAACCCATTCCCCC
TAAGATGAATCTAATAAATTTTCTTGGCCGCTTTTTTACACCGTCGTGAT
GGGAAAAAACTTGCTGTTACCCAATTTAATTCCCTGTTCCCCCATCCCCC
CCTTTTGCCAGTGTGGGTTAAATAGCCAAAAAGACCCCGCCACAAAACCC
CCCTTTCCCCAAAGGGTTTCCCCCCACCCTTGGAGGGGGCCAAAAGTGGA
CAAAATTTGAATAAGCGCTTTTAAATTTTTTTTTTTGTATAAAAATTTTT
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