DY305501

Overview
NameDY305501
Unique NameDY305501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1253
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_CITSI (Photosystem I assembly protein ycf4 OS=Citrus sinensis GN=ycf4 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 2.997e-46
Identity = 91/112 (81.25%), Postives = 98/112 (87.50%), Query Frame = 1 
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSL FL+VGISSYLDRNLLSLFPSQQINFFPQGIV SFYGIAGLFI+SYLW T+     +G + F TK+G + IF WGFPGK
Sbjct:    1 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLGFLVVGISSYLDRNLLSLFPSQQINFFPQGIVMSFYGIAGLFISSYLWCTIIWNVGSGYDRFDTKEGIVCIFRWGFPGK 112
[Close]
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_LEMMI (Photosystem I assembly protein ycf4 OS=Lemna minor GN=ycf4 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.717e-39
Identity = 78/112 (69.64%), Postives = 91/112 (81.25%), Query Frame = 1 
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            M+WRSE+IW+EFI GSRK  NFFWA ILFLGSL FL+VG SSYL RNL+S+FPSQQI+FFPQGIV SFYGIAGLFI+SYLW T+     +G + F  K+G + IF WGFPGK
Sbjct:    1 MNWRSEHIWIEFITGSRKTSNFFWACILFLGSLGFLVVGTSSYLGRNLISVFPSQQISFFPQGIVMSFYGIAGLFISSYLWSTILWNVGSGYDRFDRKEGIVCIFRWGFPGK 112
[Close]
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_POPTR (Photosystem I assembly protein ycf4 OS=Populus trichocarpa GN=ycf4 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 3.549e-39
Identity = 79/112 (70.54%), Postives = 91/112 (81.25%), Query Frame = 1 
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            MSWRSE+IW+E IAGSRK  NF WA ILFLGSL FL++GISSYLDRNL+SLFPSQQI FFPQGIV SFYG+AGLFI+SYLW T+     +G + F  K+G + IF WGFPGK
Sbjct:    1 MSWRSEHIWIELIAGSRKISNFCWAIILFLGSLGFLLIGISSYLDRNLISLFPSQQILFFPQGIVMSFYGLAGLFISSYLWCTISWNVGSGYDRFDRKEGIVCIFRWGFPGK 112
[Close]
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_POPAL (Photosystem I assembly protein ycf4 OS=Populus alba GN=ycf4 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 6.053e-39
Identity = 78/112 (69.64%), Postives = 91/112 (81.25%), Query Frame = 1 
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            MSWRSE+IW+E IAGSRK  NF WA ILFLGSL FL++GISSYLDRNL+SLFPSQQI FFPQG+V SFYG+AGLFI+SYLW T+     +G + F  K+G + IF WGFPGK
Sbjct:    1 MSWRSEHIWIELIAGSRKISNFCWAIILFLGSLGFLLIGISSYLDRNLISLFPSQQIIFFPQGLVMSFYGLAGLFISSYLWCTISWNVGSGYDRFDRKEGIVCIFRWGFPGK 112
[Close]
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_GOSHI (Photosystem I assembly protein ycf4 OS=Gossypium hirsutum GN=ycf4 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.300e-38
Identity = 79/112 (70.54%), Postives = 88/112 (78.57%), Query Frame = 1 
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            MSWRSE IW+EFI GSRK  NF WAFILF GSL FL+VG SSYL RNL+SLFPSQQI FFPQGIV SFYGIAGLFI+SYLW T+     +G + F  K+G + IF WGFPGK
Sbjct:    1 MSWRSESIWIEFIVGSRKTSNFCWAFILFFGSLGFLLVGTSSYLGRNLISLFPSQQIVFFPQGIVMSFYGIAGLFISSYLWCTIFWNVGSGYDRFDRKEGIVCIFRWGFPGK 112
[Close]
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_GOSBA (Photosystem I assembly protein ycf4 OS=Gossypium barbadense GN=ycf4 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.300e-38
Identity = 79/112 (70.54%), Postives = 88/112 (78.57%), Query Frame = 1 
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            MSWRSE IW+EFI GSRK  NF WAFILF GSL FL+VG SSYL RNL+SLFPSQQI FFPQGIV SFYGIAGLFI+SYLW T+     +G + F  K+G + IF WGFPGK
Sbjct:    1 MSWRSESIWIEFIVGSRKTSNFCWAFILFFGSLGFLLVGTSSYLGRNLISLFPSQQIVFFPQGIVMSFYGIAGLFISSYLWCTIFWNVGSGYDRFDRKEGIVCIFRWGFPGK 112
[Close]
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_VITVI (Photosystem I assembly protein ycf4 OS=Vitis vinifera GN=ycf4 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 3.924e-38
Identity = 79/112 (70.54%), Postives = 88/112 (78.57%), Query Frame = 1 
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            MSWRSE IW+E I GSRK  NF WAFILFLGSL FL+VG SSYL RNL+SLFPSQQI FFPQGIV SFYGIAGLFI+SYLW T+     +G + F  K+G + IF WGFPGK
Sbjct:    1 MSWRSERIWIELITGSRKTSNFCWAFILFLGSLGFLLVGTSSYLGRNLISLFPSQQIIFFPQGIVMSFYGIAGLFISSYLWCTISWNVGSGYDRFDRKEGIVCIFRWGFPGK 112
[Close]
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_AETGR (Photosystem I assembly protein ycf4 OS=Aethionema grandiflora GN=ycf4 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 5.125e-38
Identity = 78/112 (69.64%), Postives = 88/112 (78.57%), Query Frame = 1 
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            MSWRSE IW+EF  GSRK  NFFWAFILFLGSL FL+VG SSYL RN++SLFPSQQI FFPQGIV SFYGIAGLFI+ YLW T+     +G + F  K+G + IF WGFPGK
Sbjct:    1 MSWRSESIWIEFRTGSRKTSNFFWAFILFLGSLGFLLVGTSSYLGRNVISLFPSQQIIFFPQGIVMSFYGIAGLFISCYLWCTILWNVGSGYDLFDRKEGIVRIFRWGFPGK 112
[Close]
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_NASOF (Photosystem I assembly protein ycf4 OS=Nasturtium officinale GN=ycf4 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 6.693e-38
Identity = 78/112 (69.64%), Postives = 88/112 (78.57%), Query Frame = 1 
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            MSWRSE IW+EFI GSRK  NF WAFILFLGSL FL+VG SSYL RN++SLFPSQQI FFPQGIV SFYGIAGLFI+ YLW T+     +G + F  K+G + IF WGFPGK
Sbjct:    1 MSWRSESIWIEFITGSRKTSNFCWAFILFLGSLGFLLVGTSSYLGRNVISLFPSQQIIFFPQGIVMSFYGIAGLFISCYLWCTILWNVGSGYDLFDRKEGIVRIFRWGFPGK 112
[Close]
BLAST of DY305501 vs. ExPASy Swiss-Prot
Match: YCF4_LEPVR (Photosystem I assembly protein ycf4 OS=Lepidium virginicum GN=ycf4 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 6.693e-38
Identity = 78/112 (69.64%), Postives = 88/112 (78.57%), Query Frame = 1 
Query:  616 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLXFLMVGISSYLDRNLLSLFPSQQINFFPQGIVRSFYGIAGLFINSYLWGTL*GRWVTGNNPFRTKKGKMGIFLWGFPGK 951
            MSWRSE IW+EFI GSRK  NF WAFILFLGSL FL+VG SSYL RN++SLFPSQQI FFPQGIV SFYGIAGLFI+ YLW T+     +G + F  K+G + IF WGFPGK
Sbjct:    1 MSWRSESIWIEFITGSRKTSNFCWAFILFLGSLGFLLVGTSSYLGRNVISLFPSQQIIFFPQGIVMSFYGIAGLFISCYLWCTILWNVGSGYDLFDRKEGIVRIFRWGFPGK 112
The following BLAST results are available for this feature:
BLAST of DY305501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 131
Match NameE-valueIdentityDescription
YCF4_CITSI2.997e-4681.25Photosystem I assembly protein ycf4 OS=Citrus sine... [more]
YCF4_LEMMI2.717e-3969.64Photosystem I assembly protein ycf4 OS=Lemna minor... [more]
YCF4_POPTR3.549e-3970.54Photosystem I assembly protein ycf4 OS=Populus tri... [more]
YCF4_POPAL6.053e-3969.64Photosystem I assembly protein ycf4 OS=Populus alb... [more]
YCF4_GOSHI2.300e-3870.54Photosystem I assembly protein ycf4 OS=Gossypium h... [more]
YCF4_GOSBA2.300e-3870.54Photosystem I assembly protein ycf4 OS=Gossypium b... [more]
YCF4_VITVI3.924e-3870.54Photosystem I assembly protein ycf4 OS=Vitis vinif... [more]
YCF4_AETGR5.125e-3869.64Photosystem I assembly protein ycf4 OS=Aethionema ... [more]
YCF4_NASOF6.693e-3869.64Photosystem I assembly protein ycf4 OS=Nasturtium ... [more]
YCF4_LEPVR6.693e-3869.64Photosystem I assembly protein ycf4 OS=Lepidium vi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AH07RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305501 ID=DY305501; Name=DY305501; organism=Citrus sinensis; type=EST; length=1253bp
GTAGAATATGAATTCTAATTATTATAGGATATCCTTATACCAATAACAGG
TACAAATATTAAATCGAGGTACCCTTTCTATGACAATTCTCAACAGCTTT
CCCTCTATTTTTGTGCCTTTAGTGGGCCTAGTATTTCCGGCAATGGCAAT
GGCTTCGTTATTTCTTTATCTTGAAAAAAATAAGATTTTGTAAATCCGAT
CGGATCAAGGTCAAATCTCGTCTAGTTTTTTTCAAGACTTAGCGATGACG
GATATCCATTTAGTAGAATAGTGTATAAGACTAAGAGGCGGCTTTCCCCG
AACATAAACGAAGAGCTCTTATGCATGTGTAAACATGATATATAGGTACA
TAAATTCTATCTATTTTGAACAAGAGGCTGTGATCCGAACTCATGTCTGC
AATGAAAGTCAATGGTACCAATCTACAGGGACTTATATGAAGGGGATACT
CTTATTTTATTCTACCTCACCAATTCGATGAATTATTGCTAAGAGCTCAC
GTCCAAATAGTACTAGTTGATGAGAGTTACTTCGGAAATACAAAAAGTAA
ACTAAAATGGATTTGGTTTTGGTTATTTCCCCAATTCCAATAAAATGCAA
CTGGAGCTAGTATGTATGAGTTGGCGATCAGAATATATATGGGTAGAATT
TATAGCGGGCTCTCGCAAACCAGGCAATTTCTTCTGGGCCTTTATCCTTT
TTTTAGGCTCATTANGATTCTTAATGGTTGGAATTTCTAGTTATCTTGAT
AGGAATTTGCTATCTTTATTTCCGTCGCAGCAAATCAATTTTTTTCCACA
AGGGATCGTGAGGTCTTTCTACGGGATCGCGGGTCTCTTTATTAATTCCT
ATTTGTGGGGCACATTATAAGGAAGGTGGGTAACGGGTAATAATCCATTT
AGAACCAAAAAGGGAAAAATGGGAATTTTTCTTTGGGGATTTCCTGGAAA
AAAACCACCGCAGCTCAGAGACATTCCTTTGGAAAAAAATTCCTGCCATC
CAAAAAAAAATTAAAAAAAGGTAATTTGGGTGCCCGGGCCTTTTATTGAG
AAAAACAAAGGCAGGGGGGCCATCTCCCTCAAAGGATGTGAAGGAAATAT
TAAAGCCGCAAGGAACATATAAGAAAAGGGGTTCTGGAAAGGATGACAAA
TAATTTCGTGTAGCATCGAGATTCAGGAATAATTTAAAGGAAAAAGAAAA
ATGATAAGAAAAAAAAACATCACTCTGTCATTGGCAGCAAAAGAAAGAAC
AAC
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