DY305492

Overview
NameDY305492
Unique NameDY305492
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1293
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6663 contig Csv1_Contig6663:1..1293. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY305492 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.194e-25
Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 2 
Query:    2 KISTSVLMGATAIWVLFEWINYHFLTIVCFALVLGMLAHFFWVNISGLFNR 154
            KIS SVLMGATAIWVLFEWIN+HFL++VC+AL+LGM+A F W N SG  NR
Sbjct:   71 KISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNR 121

HSP 2 Score: 49.2914 bits (116), Expect = 7.194e-25
Identity = 24/49 (48.98%), Postives = 30/49 (61.22%), Query Frame = 1 
Query:  253 DRSTSKVPRFILPP*VFANIGTTFCANVNEALGLLQDIACGGKLKQLLV 399
            +RS S+VPR +LP   FA +G      VN  L  LQD+AC G LKQ L+
Sbjct:  120 NRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLM 168
The following BLAST results are available for this feature:
BLAST of DY305492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RTNLH_ARATH7.194e-2574.51Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM1AG06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305492 ID=DY305492; Name=DY305492; organism=Citrus sinensis; type=EST; length=1293bp
GAAGATATCAACCAGTGTATTAATGGGTGCAACAGCAATTTGGGTGCTCT
TTGAATGGATTAACTACCATTTTCTGACCATTGTATGCTTTGCTTTGGTC
CTTGGCATGCTTGCTCACTTTTTTTGGGTAAACATTTCGGGCTTATTTAA
CAGGTATAAACATTTATCGTTTTGGCTGTTTGTCCAGCTTGGCTAATGTT
ATTTTATGTCGTGGTGAGCTATAATTTCTTAATTTCATTTTTTTTTAATT
GTGACAGATCAACATCAAAAGTTCCCCGCTTTATTCTGCCTCCATAGGTA
TTTGCTAACATTGGCACAACATTTTGTGCTAATGTTAATGAAGCTCTGGG
GCTACTTCAAGACATTGCATGTGGAGGAAAACTGAAACAACTTCTTGTGG
TATGTTAAACTTGGGAGTTGTGAATTGTTGATAATTATTTCCCTTTACTC
CATGTACTTGCATATTTCTTATCCTTCTGCATGCTGCAAACGCCCTCAAA
CTTTGCCAATGTGTATGTTCTTGAAATATTATTATAACATCTTGATTACT
GTAATAAAAATGAATATTTGTCATGCTTCAAGCTTTTTGTTTATCCAAAA
GAGACATTATGTAATAATAATTGGAAGGAACCAAATCTGTTATATTCTCT
GTGAAAATAAAGGCTAATACAAAAAAATCATTATATTGTCATTTTCTTGG
AAACATGGAATTGATTATCAATAATAACTTCCAGGCTGTAACAAGCTTGT
GAGTTGCTGCCTGTGAAAAGAAGCTGGTGTAACCTTTTGACCCTTCTAAT
AATTGGTTTTTTTTCTGCCCATAAGTTACCAGTCGGGTAAAGAAGCCTGA
AAAAAAAGTGGAAAGTCTTTAAACCATGATTTCCCACCACTCCGAAATGC
GGAAATAATGCTTTGATTAGGGTCCCCCCCCAAATCCCTACACGCAAATT
TAAAGTGAAAAAACCAAAAATAATTGAAATAATCAAGAATTAAATTGTAA
ATTTCCCCATTGACGCGAGAGGAAGAGCGGAGACCGAGAAAAGACTTTGC
TCAATATAGGAAGGATGTTATAGAGTAGAAATATTGATATGTTAAATAAA
TTATAATGATGTGTGAATGGAAAACACATAGGATAAAAAAAAGTGAATGG
TAGCTGGATCGAGCCATAAGATAGAAGCGACATAAAAAATAATTGATGAT
AACTTCAGTGAAAGCCTGAGACGTAATTAATATGGAGATAGAGCAAGTGA
GAAAAATACAGAACAGGATCAATTATAATGACATGATGATATA
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