DY305490 | Citrus Genome Database

Overview


Name	DY305490
Unique Name	DY305490
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	1264

Libraries


Library Name	Type
SLH	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
DY305490_ssr123	microsatellite	DY305490_ssr123:123..137.	BLAST: Citrus ESTs to Prunus persica proteins V1

Homology

[Close]

BLAST of DY305490 vs. ExPASy Swiss-Prot
Match: ARG2_PHAAU (Indole-3-acetic acid-induced protein ARG2 OS=Phaseolus aureus GN=ARG2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.126e-16
Identity = 47/94 (50.00%), Postives = 56/94 (59.57%), Query Frame = 2

Query:  155 MARSFSNAKLFSAFVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSEKVSWVPDPVTGVYRPENLANELDGADLRAMFL 436
            MARSF+N K+ SA VADG SN   + G++AA+                M+ K  EE     EKVSWVPDPVTG YRPEN  NE+D AD+RA  L
Sbjct:    1 MARSFTNVKVLSALVADGFSNTTTRHGFAAAAAATQSATRGGASIGGNMVPKSGEEKVRGGEKVSWVPDPVTGYYRPEN-TNEIDVADMRATVL 93

[Close]

BLAST of DY305490 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.748e-12
Identity = 44/96 (45.83%), Postives = 55/96 (57.29%), Query Frame = 2

Query:  155 MARSFSNAKLFSAFVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSEKVSWVPDPVTGVYRPENLANELDGADLRAMFLKH 442
            MARS   AKL  A VADGIS +I +RGY+AA+                 L+    E +G+S   +W PDP+TG YRPEN A E+D A+LR M L H
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKND--LRPAVREDSGASS--AWAPDPITGYYRPENRAVEIDPAELREMLLNH 92

[Close]

BLAST of DY305490 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.429e-11
Identity = 40/100 (40.00%), Postives = 53/100 (53.00%), Query Frame = 2

Query:  155 MARSFSNAKLFSAFVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSE----KVSWVPDPVTGVYRPENLANELDGADLRAMFLKH 442
            MARS S+ KL  A + DG+  +I +RGYS A                 + ++ A + + SSE      +W PDPVTG YRPEN   E+D A+LR M L H
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNH 100

The following BLAST results are available for this feature:

BLAST of DY305490 vs. ExPASy Swiss-Prot

BLAST of DY305490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3


Match Name	E-value	Identity	Description
ARG2_PHAAU	1.126e-16	50.00	Indole-3-acetic acid-induced protein ARG2 OS=Phase...	[more]
LEA5_CITSI	3.748e-12	45.83	Late embryogenesis abundant protein Lea5 OS=Citrus...	[more]
LEA5D_GOSHI	2.429e-11	40.00	Late embryogenesis abundant protein Lea5-D OS=Goss...	[more]

Properties


Property Name	Value
Genbank description	KN0AAM1AG04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DY305490 ID=DY305490; Name=DY305490; organism=Citrus sinensis; type=EST; length=1264bp
GCACAAACGCTTTGAGGGGATTTTCGCGCTACGAAGAGGGAAGTTTCTTT
AGCTGCTGTTGAAGGCTTTTCGATAGAAAGAATAGAAGGAAATTGCTTTC
TGCAGCAGCGTTAAGATCTCTTATCATCATCATCATCCCACATAACTAAG
AAAAATGGCTCGCTCTTTCTCAAACGCTAAGCTTTTCTCTGCTTTCGTCG
CTGACGGAATCTCTAACGCCATCTACAAAAGAGGATACTCGGCGGCATCA
CAAGGCGCTGTGTCGCGGGCAACAGGGGGAGCTAGGAGTGCTGCTGCGAT
GTTGAAGAAACCAGCAGAAGAGATGACAGGATCCAGTGAGAAGGTCTCGT
GGGTCCCAGACCCAGTCACTGGTGTCTACAGGCCGGAGAATCTCGCCAAC
GAGCTCGATGGGGCCGACCTCAGAGCCATGTTCTTGAAGCACAACAACTG
ATCATCAAAATTAATAAGTATTATTATTAATATATATTAATTCGGACATG
GAAACTGAGGAAGGACGAAAGAAAAATTAAAAAAAGATTAAAAAGGGATT
TGTTCTGATGTGGTCAGCCGCATGAGCTCTCGAGGAATTCCGGGAAATTG
GCGTAGCAGCTGCAGCTCCCCTGTTCTCTCTGTTTTGACTTGGGGATCCA
AACTAGATTTTGTATTGCATGTAACATTCCTGTTTTTTTTGTTGCCATTT
TTCGGAAATAAAGATGATTTATTATTTACAATTCTGATAAAAAAAAAAAA
AAAAACTCGAAGGGGGCCCCGGTACCAGTTCCCCCTAAAGTGAATCGTAT
AACATTTACTGGGCGTCCTTTTTCAACCTCTGGACTGGGAAACCCCGGCG
TTTACCCACTTTAACCCCTTTGCACCAATCCCCCCTTTCCCCGCGTGGGG
AAATAGCAAAAAGGCCAACACCCGTTCCCCCTTCCCAACAATTTCCCCAA
CCCGGAAGGGGAAAAGGGAAAATTTTAACCCTTAAAATTTTGGAAAAAAT
CCCCGTTTAAATTTTGTTTAATGCAGCCTCCTTTTTTGACCGCAAAGGCC
GGGAAAGCCGCCAAAACTCCCTTTAATTTTAAAAAAAAAAAGAGCGGTAG
AAGGGGGTTGGAGAGTGTTTTTGTGCGGTTTGGGTAAAAAATAAGTCTCT
ACCTACATATACATAACGGCGGTGACGCCCACTGGTCTAGAGAGGGTTCG
ACGTAAATCACGCGCTTCTCTCTCAGGGTCGGCAGGAAGTCGCGGCCCCA
ACGACTACAAATAA