DY305489

Overview
NameDY305489
Unique NameDY305489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1271
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305489 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1)

HSP 1 Score: 575.859 bits (1483), Expect = 1.792e-163
Identity = 297/353 (84.14%), Postives = 316/353 (89.52%), Query Frame = 2
Query:    2 TTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTGFQLIGSPPGYVGYTEGGQLTEAVPRPPFTVVPFDEIERLIPMSFT*SFKFPRKENWTNARGKLENSKILF*KMDPKVG 1060
            TTLDEYRKHIEKDPALERRFQPVKVPEP+VDETIQILKGLRERYEIHHKLRYTDE LV+AAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEA+ELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQI+AL+DK KE+SKAE+EA D GP+VTE DIQHIVS+WTGIPVEKVSTDESDRLLKMEETLH R+IGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHT  +LIGSPPGYVGYTEGGQLTEAV R P+TVV FDEIE+  P  F    +       T+++G+  + K     M   VG
Sbjct:  407 TTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEDLVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEAKELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQITALIDKNKEVSKAESEAADTGPLVTEADIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHTRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVG 759          
BLAST of DY305489 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1)

HSP 1 Score: 568.54 bits (1464), Expect = 2.861e-161
Identity = 296/354 (83.62%), Postives = 314/354 (88.70%), Query Frame = 2
Query:    2 TTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGD-VGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTGFQLIGSPPGYVGYTEGGQLTEAVPRPPFTVVPFDEIERLIPMSFT*SFKFPRKENWTNARGKLENSKILF*KMDPKVG 1060
            TTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKL YTDEA+ +AA+LS+QYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISAL+DK KE SKAE+EAGD  GP+VTE DIQHIVS+WTGIPVEKVSTDESDRLLKMEETLH RVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAK+LA YYFGSEEAMIRLDMSEFMERHT  +LIGSPPGYVGYTEGGQLTEAV R P+TVV FDEIE+  P  F    +       T+++G+  + K     M   VG
Sbjct:  409 TTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLHYTDEAIEAAAKLSHQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALIDKNKEKSKAESEAGDAAGPIVTEADIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHTRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKSLATYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVG 762          
BLAST of DY305489 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 561.222 bits (1445), Expect = 4.567e-159
Identity = 286/353 (81.02%), Postives = 313/353 (88.67%), Query Frame = 2
Query:    2 TTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTGFQLIGSPPGYVGYTEGGQLTEAVPRPPFTVVPFDEIERLIPMSFT*SFKFPRKENWTNARGKLENSKILF*KMDPKVG 1060
            TTLDEYRKHIEKDP LERRFQPVKVPEP+VDETIQILKGLRERYEIHHKLRYTDEAL++AAQLSYQYISDRFLPDKAIDL+DEAGSRVRL+HAQLPEEA+EL+KE+R+I KEK E VR QDFEKAGELRD+EMDLKAQISAL++KGKEMSKAETE  D GP+VTEVDIQHIVS+WTGIPV+KVS DESDRLLKME+TLHKR+IGQDEAV+AISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHT  +LIGSPPGYVGYTEGGQLTEAV R P+TVV FDEIE+  P  F    +       T+++G+  + K     M   VG
Sbjct:  407 TTLDEYRKHIEKDPDLERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEALIAAAQLSYQYISDRFLPDKAIDLVDEAGSRVRLQHAQLPEEAKELDKEVRKIVKEKEEYVRNQDFEKAGELRDKEMDLKAQISALIEKGKEMSKAETETADEGPIVTEVDIQHIVSSWTGIPVDKVSADESDRLLKMEDTLHKRIIGQDEAVQAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVG 759          
BLAST of DY305489 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1)

HSP 1 Score: 546.199 bits (1406), Expect = 1.520e-154
Identity = 286/353 (81.02%), Postives = 309/353 (87.54%), Query Frame = 2
Query:    2 TTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTGFQLIGSPPGYVGYTEGGQLTEAVPRPPFTVVPFDEIERLIPMSFT*SFKFPRKENWTNARGKLENSKILF*KMDPKVG 1060
            TTLDEYRKHIEKDPALERRFQPVKVPEP+VDETIQILKGLRERYEIHHKLRYTDE+LV+AAQLSYQYISDRFLPD+AIDL+DEAGSRVRLRHAQ+PEEARELEKELRQITKE NEAVRGQDFEKAG LRDRE++L+A++SA+  KGKEMSKAE+E GD GP+VTE DIQHIVS+WTGI VEKVSTDESD LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIF GPTGVGKSELAKALAAYYFG EEAMIRLDMSEFMERHT  +LIGSPPGYVGYTE  QLTEAV R P+TVV FDEIE+  P  F    +       TN++G+  + K     M   VG
Sbjct:  356 TTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDESLVAAAQLSYQYISDRFLPDRAIDLMDEAGSRVRLRHAQVPEEARELEKELRQITKE-NEAVRGQDFEKAGTLRDREIELRAEVSAIQAKGKEMSKAESETGDEGPMVTESDIQHIVSSWTGILVEKVSTDESDLLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFFGPTGVGKSELAKALAAYYFGCEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEPPQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTNSKGRTVDFKNTLLIMTSNVG 707          
BLAST of DY305489 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1)

HSP 1 Score: 447.973 bits (1151), Expect = 5.635e-125
Identity = 239/364 (65.66%), Postives = 286/364 (78.57%), Query Frame = 2
Query:    2 TTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVD--KGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTGFQLIGSPPGYVGYTEGGQLTEAVPRPPFTVVPFDEIERLIPMSFT*SFKFPRKENWTNARGKLENSKILF*KMDPKVGKQGN*KRGG 1087
            TTL+EYRKHIEKD ALERRFQPV V EPSV+ETI+IL GLR+RYE HHKL  +DEAL +AA+ + QYI+DRFLPDKAIDLIDEAGSRVRL ++QLP  AREL+KELR+I K+K+EAVR QDFE AG+LRDREM++KAQI+A+    KG E +  E        VVTE DI  IV+AWTGIPV K++  ES++LL+MEETLH R+IGQDEAV A+S+AIRRARVGLKNPNRPIASFIFSGPTGVGK+EL KALA+Y+FGSEEAM+RLDMSE+MERHT  +LIGSPPGYVGY EGGQLTE+V R P+TVV FDEIE+  P  F    +       T+++G+  + K     +   VG +   K GG
Sbjct:  314 TTLEEYRKHIEKDSALERRFQPVMVGEPSVEETIEILYGLRDRYEKHHKLVISDEALSAAAKFADQYIADRFLPDKAIDLIDEAGSRVRLMNSQLPPAARELDKELREILKQKDEAVRSQDFETAGQLRDREMEIKAQIAAIAHSKKGDEENTKEVS------VVTEEDIAQIVAAWTGIPVNKMTRSESEKLLQMEETLHGRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKALASYFFGSEEAMVRLDMSEYMERHTVSKLIGSPPGYVGYNEGGQLTESVRRRPYTVVLFDEIEKGHPDVFNLLLQILEDGRLTDSKGRTVDFKNTLLILTSNVGSKVIEKGGG 671          
BLAST of DY305489 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1)

HSP 1 Score: 432.95 bits (1112), Expect = 1.876e-120
Identity = 229/362 (63.26%), Postives = 278/362 (76.80%), Query Frame = 2
Query:    2 TTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTGFQLIGSPPGYVGYTEGGQLTEAVPRPPFTVVPFDEIERLIPMSFT*SFKFPRKENWTNARGKLENSKILF*KMDPKVGKQGN*KRGG 1087
            TTL+EYRKHIEKDPALERRFQPV V EPSV+ETI+IL GLR+RYE HH+L  +D AL +AA+ + QYISDRFLPDKAIDLIDEAGSRVRL ++QLP  AREL+KELR + K K+EA+R Q +E A + R REM++KAQI+A+     +  K E +     PVVTE DI  IV+AWTGIPV K++  ES++L+ MEETLH R+IGQDEAV A+SRAIRRARVGLKNPNRPIASFIFSGPTGVGK+EL KALA+Y+FGSE +MIRLDMSE+MERHT  +LIGSPPGYVGY+EGG LTEAV + P+TV+ FDEIE+  P  F    +       T+A+G+  + K     M   +G +   K GG
Sbjct:  317 TTLEEYRKHIEKDPALERRFQPVVVGEPSVEETIEILFGLRDRYEKHHQLTMSDGALAAAAKYANQYISDRFLPDKAIDLIDEAGSRVRLLNSQLPPAARELDKELRAVLKTKDEAIRAQKYETAEQYRAREMEIKAQIAAIA----QSKKNEPDLNLEDPVVTEDDIAEIVAAWTGIPVTKLTKSESEKLMHMEETLHGRIIGQDEAVVAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKALASYFFGSEASMIRLDMSEYMERHTVSKLIGSPPGYVGYSEGGYLTEAVRKKPYTVILFDEIEKAHPDIFNLLLQILEDGRLTDAKGRTIDFKNTLLIMTSNIGSKVIEKGGG 674          
BLAST of DY305489 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1)

HSP 1 Score: 431.409 bits (1108), Expect = 5.458e-120
Identity = 228/362 (62.98%), Postives = 278/362 (76.80%), Query Frame = 2
Query:    2 TTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTGFQLIGSPPGYVGYTEGGQLTEAVPRPPFTVVPFDEIERLIPMSFT*SFKFPRKENWTNARGKLENSKILF*KMDPKVGKQGN*KRGG 1087
            TTL+EYRKHIEKDPALERRF PV V EPSV+ETI+IL GLR+RYE HH+L  +D AL +AA+ + QYISDRFLPDKAIDLIDEAGSRVRL ++QLP  AREL+KELR + K K+EA+R Q +E A + R REM++KAQI+A+     +  K E +     PVVTE DI  IV+AWTGIPV K++  ES++L++MEETLH R+IGQDEAV A+SRAIRRARVGLKNPNRPIASFIFSGPTGVGK+EL KALA+Y+FGSE +MIRLDMSE+MERHT  +LIGSPPGYVGY+EGG LTEAV + P+TV+ FDEIE+  P  F    +       T+A+G+  + K     M   +G +   K GG
Sbjct:  317 TTLEEYRKHIEKDPALERRFHPVVVGEPSVEETIEILFGLRDRYEKHHQLTMSDGALAAAAKYANQYISDRFLPDKAIDLIDEAGSRVRLLNSQLPPAARELDKELRAVLKTKDEAIRAQKYETAEQYRAREMEIKAQIAAIA----QSKKNEPDLNLEDPVVTEDDIAEIVAAWTGIPVTKLTKSESEKLMQMEETLHGRIIGQDEAVIAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKALASYFFGSEASMIRLDMSEYMERHTVSKLIGSPPGYVGYSEGGYLTEAVRKKPYTVILFDEIEKAHPDIFNLLLQILEDGRLTDAKGRTIDFKNTLLIMTSNIGSKVIEKGGG 674          
BLAST of DY305489 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1)

HSP 1 Score: 429.483 bits (1103), Expect = 2.074e-119
Identity = 220/362 (60.77%), Postives = 280/362 (77.35%), Query Frame = 2
Query:    2 TTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTGFQLIGSPPGYVGYTEGGQLTEAVPRPPFTVVPFDEIERLIPMSFT*SFKFPRKENWTNARGKLENSKILF*KMDPKVGKQGN*KRGG 1087
            TTL+EYRKHIEKD ALERRFQPV V EP+V+ETI+IL+GLR+RYE HH+L+ +D A+V+AA+LS QYI+DRFLPDKAIDL+DEA SRVRL + +LP  A  L++ELR I K KNE +R  DFE+A + R+RE+++K Q++AL+   KE  + E       P+V E DI +IVS+WTGIPV K++  ES++LL MEETLH R++GQ+EAV A+S+AIRRARVGLKNPNRPIASFIFSGPTGVGK+EL KA+A+Y+FGSEEAM+RLDMSE+MERHT  +LIGSPPGYVGY EGGQLTEAV + P+TVV FDEIE+  P  F    +       T+++G+  + K     M   +G +   K+GG
Sbjct:  345 TTLEEYRKHIEKDAALERRFQPVMVEEPTVEETIEILRGLRDRYEAHHRLKISDSAIVAAAKLSDQYIADRFLPDKAIDLVDEASSRVRLMNYKLPPSAEYLDEELRHIQKIKNELIRSGDFEEASQFREREIEVKVQMAALMKAKKEAIEEELALNP--PIVNEDDIANIVSSWTGIPVSKLTKSESEKLLHMEETLHSRIVGQNEAVIAVSKAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKAMASYFFGSEEAMVRLDMSEYMERHTVSKLIGSPPGYVGYNEGGQLTEAVRKRPYTVVLFDEIEKAHPDVFNLLLQILEDGRLTDSKGRTIDFKNTLLIMTSNIGSKVIEKKGG 704          
BLAST of DY305489 vs. ExPASy Swiss-Prot
Match: CLPB_OCEIH (Chaperone protein clpB OS=Oceanobacillus iheyensis GN=clpB PE=3 SV=1)

HSP 1 Score: 383.259 bits (983), Expect = 1.704e-105
Identity = 194/338 (57.40%), Postives = 250/338 (73.96%), Query Frame = 2
Query:    2 TTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTGFQLIGSPPGYVGYTEGGQLTEAVPRPPFTVVPFDEIERLIPMSFT*SFKFPRKENWTNARGKL 1015
            TTLDEYRK+IEKD ALERRFQP++V EP+++ETIQIL GLR+RYE HH++  TDEA+ +AA LS +YI+DRFLPDKAIDLIDEAGS+VRLR   +P   +ELE++L ++ KEK+ AV+ Q+FEKA  LRD E   + ++    ++ KE      + G     VT  DI  +VS WTG+PV K++ DE+DRLL ME+ LH RVIGQ EAV A+++AIRRAR GLK+P RPI SFIF GPTGVGK+ELA+ALA   F  E+AMIR+DMSE+MERH   +L+GSPPGYVGY EGGQLTE V R P++VV  DE+E+  P  F    +       T+++G++
Sbjct:  318 TTLDEYRKYIEKDAALERRFQPIQVDEPTLEETIQILNGLRDRYEAHHRVTITDEAIEAAASLSDRYITDRFLPDKAIDLIDEAGSKVRLRSYTVPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDSEQRFREELETTKNQWKE------KQGQTDSEVTMEDIAAVVSTWTGVPVSKLTKDETDRLLNMEKILHDRVIGQSEAVNAVAKAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAEVMFADEDAMIRIDMSEYMERHATSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEVEKAHPEVFNILLQVLEDGRLTDSKGRV 649          
BLAST of DY305489 vs. ExPASy Swiss-Prot
Match: CLPC_BACSU (Negative regulator of genetic competence clpC/mecB OS=Bacillus subtilis GN=clpC PE=1 SV=1)

HSP 1 Score: 382.489 bits (981), Expect = 2.907e-105
Identity = 195/337 (57.86%), Postives = 250/337 (74.18%), Query Frame = 2
Query:    2 TTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTGFQLIGSPPGYVGYTEGGQLTEAVPRPPFTVVPFDEIERLIPMSFT*SFKFPRKENWTNARGK 1012
            TTLDEYRK+IEKD ALERRFQP++V +PSVDE+IQIL+GLR+RYE HH++  TD+A+ +A +LS +YISDRFLPDKAIDLIDEAGS+VRLR    P   +ELE++L ++ KEK+ AV+ Q+FEKA  LRD E  L+ Q+       KE      + G     VT  DI  +VS+WTG+PV K++  E+D+LL ME  LH RVIGQDEAV A+++A+RRAR GLK+P RPI SFIF GPTGVGK+ELA+ALA   FG EE+MIR+DMSE+ME+H+  +L+GSPPGYVGY EGGQLTE V R P++VV  DEIE+  P  F    +       T+++G+
Sbjct:  315 TTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKE------KQGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLTDSKGR 645          
The following BLAST results are available for this feature:
BLAST of DY305489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 201
Match NameE-valueIdentityDescription
CLPAB_SOLLC1.792e-16384.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAA_SOLLC2.861e-16183.62ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PEA4.567e-15981.02ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPA_BRANA1.520e-15481.02ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_GUITH5.635e-12565.66ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORYE1.876e-12063.26ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORPU5.458e-12062.98ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_CYACA2.074e-11960.77ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_OCEIH1.704e-10557.40Chaperone protein clpB OS=Oceanobacillus iheyensis... [more]
CLPC_BACSU2.907e-10557.86Negative regulator of genetic competence clpC/mecB... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM1AG03RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305489 ID=DY305489; Name=DY305489; organism=Citrus sinensis; type=EST; length=1271bp
GACAACACTAGATGAATATAGAAAGCACATTGAGAAAGATCCAGCATTAG
AAAGACGATTCCAGCCAGTTAAAGTGCCAGAACCGTCAGTGGATGAAACC
ATACAAATTTTGAAAGGGCTTCGAGAGCGATATGAAATTCACCACAAGCT
TCGTTACACTGATGAAGCACTAGTTTCTGCTGCTCAGTTGTCATACCAGT
ACATCAGTGACCGTTTTCTCCCTGATAAAGCTATTGATTTGATTGATGAA
GCTGGTTCTCGGGTTCGTCTTCGTCATGCACAGCTCCCCGAGGAAGCTAG
AGAGCTTGAAAAAGAGCTCAGGCAGATAACTAAGGAGAAGAATGAGGCTG
TTCGTGGCCAAGACTTTGAAAAGGCTGGAGAGTTACGTGATAGAGAAATG
GACCTTAAGGCTCAGATATCTGCTCTTGTCGATAAAGGCAAAGAGATGAG
CAAGGCAGAGACTGAAGCAGGGGATGTTGGTCCTGTTGTGACTGAAGTGG
ACATTCAACACATTGTCTCAGCTTGGACGGGCATTCCGGTTGAAAAAGTC
TCGACTGATGAATCTGATCGCCTCCTCAAGATGGAAGAGACCCTTCACAA
GAGAGTTATTGGTCAGGATGAAGCTGTCAAAGCTATTAGTCGTGCTATCC
GGCGTGCACGTGTTGGACTCAAGAACCCCAATCGACCAATTGCTAGTTTC
ATCTTTTCTGGTCCAACTGGTGTCGGGAAGTCTGAACTGGCCAAAGCACT
GGCTGCCTATTACTTTGGCTCAGAGGAGGCCATGATCAGGCTTGATATGA
GTGAGTTCATGGAAAGACACACTGGTTTCCAGCTCATTGGTTCACCACCT
GGTTATGTTGGGTACACTGAGGGGGGTCAGCTGACTGAGGCTGTTCCCCG
TCCTCCTTTTACGGTTGTACCCTTTGATGAAATTGAAAGGCTCATCCCGA
TGTCCTTCACATGAAGCTTCAAATTTCCGAGGAAGGAAAATTGGACGAAC
GCAAGGGGAAAACTGGAAAACTCCAAAATACTCTTTTAAAAAATGGATCC
AAAGGTTGGAAAGCAGGGTAATTGAAAAAGGGGGGGACCCCCCCTTTGGG
TTTTGTTTTTTTATTATTAAGAGAAAAAAAAACCAGTTTTCCAAACGGGG
AATAAAAAAATTGGGGGAAACGCGGGGGGAAATTTGGAAACAACCTTACC
TTTCGGGGGCCCACAAATTTTCTTTTCGATAAAAAATAGGTGGTTAAAGA
GGAAAGGAAATGTGTTTGTTT
back to top