DY305473

Overview
NameDY305473
Unique NameDY305473
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1261
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305473 vs. ExPASy Swiss-Prot
Match: RSP40_ARATH (Arginine/serine-rich-splicing factor RSP40 OS=Arabidopsis thaliana GN=RSP40 PE=1 SV=2)

HSP 1 Score: 320.857 bits (821), Expect = 1.029e-86
Identity = 189/388 (48.71%), Postives = 227/388 (58.51%), Query Frame = 2
Query:   35 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXXXXXDYGRVRSPSPYRRDRGSPDYGRNSSR-SPYKKERAAIGHGRGPSRSPYRRD-RGSPENGSGSR-------------PIPYRKGEPFPTKGRGPSRLPMKKRGPSPEKGRGGSPSPFKKES---LTPDKGPVPHPIFMPRTQGKPPVLKGTVNPLSLKRIPTSLP 1144
            M+P+FCGNFEYDAR+ DLERLFR+YGKV+RVDMK+GFAF+YM+DERDAEDAIR LDR EFGRKGRRLRVEWTK E                ++ RPSKTLFVINFD  +TRTRDLE+HFEPYGKI++VRIRRNFAF+QYE QEDATRALDA+N SKL D+VISVEYAV+DDD R NGH                                                 R RSPSPY+R+RGSPDYGR +S  + Y+KER +  +GR  S SPY++  RGSPE G   R             P  Y +      +   P+  P KK   SP  G G   SP ++      +P+ G V  P  + R +       G  +P+   R P S P
Sbjct:    1 MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSERGGDKRSGGGSRRSS-SSMRPSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGHSPERRRDRSPER-------------------------------------RRRSPSPYKRERGSPDYGRGASPVAAYRKERTSPDYGRRRSPSPYKKSRRGSPEYGRDRRGNDSPRRRERVASPTKYSRSPNNKRERMSPNHSPFKKE--SPRNGVGEVESPIERRERSRSSPENGQVESPGSIGR-RDSDGGYDGAESPMQKSRSPRSPP 347          
BLAST of DY305473 vs. ExPASy Swiss-Prot
Match: RSP41_ARATH (Arginine/serine-rich-splicing factor RSP41 OS=Arabidopsis thaliana GN=RSP41 PE=1 SV=2)

HSP 1 Score: 319.316 bits (817), Expect = 2.993e-86
Identity = 178/340 (52.35%), Postives = 213/340 (62.65%), Query Frame = 2
Query:   35 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXXXXXDYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRG-PSRSPYRRDRGSPENGSGSRPIPYRKGEPFPTKGRGPSRLPMKKRGPSPEKGRGGSPSPFKKESLTPDKGPVPH 1051
            M+P+FCGNFEYDAR+SDLERLFR+YGKV+RVDMK+GFAF+YM+DERDAEDAIR LDR E+GR GRRLRVEWTK++                +  RPSKTLFVINFD  +TRTRDLERHFEPYGKI++VRIRRNFAF+QYE QEDATRALDATN SKL D+VISVEYAV+DDD R NG+                                                 R RSPSPYRR+RGSPDYGR +S   +K+ER +  +GRG  S SPY+R R SP+         Y++ +    +   P    ++ R  SP KGRG S SP   E     + P P+
Sbjct:    1 MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDRGGAGRSGGSRRSS--SGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSPERRRDRSPDR-------------------------------------RRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGRRSPSPYKRARLSPD---------YKRDDRRRERVASPENGAVRNR--SPRKGRGESRSPPPYEKRRESRSPPPY 290          
BLAST of DY305473 vs. ExPASy Swiss-Prot
Match: RSP31_ARATH (Arginine/serine-rich-splicing factor RSP31 OS=Arabidopsis thaliana GN=RSP31 PE=1 SV=2)

HSP 1 Score: 243.047 bits (619), Expect = 2.726e-63
Identity = 137/277 (49.46%), Postives = 169/277 (61.01%), Query Frame = 2
Query:   35 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDR--RNGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXXXXXDYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDR 859
            MRP+F GNFEY+ RQSDLERLF +YG+VDRVDMKSG+AF+Y +DERDAEDAIR LD   FG + RRL VEW K E                +N +P+KTLFVINFDP  T+  D+E+HFEPYGK+ +VRIRRNF+FVQ+E QEDAT+AL+AT  SK+ DRV+SVEYA++DDD+R  RNG                                               +Y R + P+ Y R R SPDYGR S  S Y ++R+  G+ R  SRSP  R R
Sbjct:    1 MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWAKGERGRPRGDAKAP-----SNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDERDDRNG-----GRSPRRSLSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRARSPEYDRYKGPAAYER-RRSPDYGRRS--SDYGRQRSP-GYDRYRSRSPVPRGR 263          
BLAST of DY305473 vs. ExPASy Swiss-Prot
Match: RBM4_MACFA (RNA-binding protein 4 OS=Macaca fascicularis GN=RBM4 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.130e-11
Identity = 47/165 (28.48%), Postives = 80/165 (48.48%), Query Frame = 2
Query:   35 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 529
            M  +F GN   +A + ++  LF +YGKV   D+   + F++++D+  AEDAIR L    +   G  + VE +K++                  ++ S  L V N  P  T  ++L   FE YG +I   I +++AFV  E  EDA  A+   + ++   + + V+
Sbjct:    1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLH--HYKLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCT-NKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144          
BLAST of DY305473 vs. ExPASy Swiss-Prot
Match: RBM4_HUMAN (RNA-binding protein 4 OS=Homo sapiens GN=RBM4 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.130e-11
Identity = 47/165 (28.48%), Postives = 80/165 (48.48%), Query Frame = 2
Query:   35 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 529
            M  +F GN   +A + ++  LF +YGKV   D+   + F++++D+  AEDAIR L    +   G  + VE +K++                  ++ S  L V N  P  T  ++L   FE YG +I   I +++AFV  E  EDA  A+   + ++   + + V+
Sbjct:    1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLH--HYKLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCT-NKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144          
BLAST of DY305473 vs. ExPASy Swiss-Prot
Match: RBM4_BOVIN (RNA-binding protein 4 OS=Bos taurus GN=RBM4 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.130e-11
Identity = 47/165 (28.48%), Postives = 80/165 (48.48%), Query Frame = 2
Query:   35 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 529
            M  +F GN   +A + ++  LF +YGKV   D+   + F++++D+  AEDAIR L    +   G  + VE +K++                  ++ S  L V N  P  T  ++L   FE YG +I   I +++AFV  E  EDA  A+   + ++   + + V+
Sbjct:    1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLH--HYKLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCT-NKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144          
BLAST of DY305473 vs. ExPASy Swiss-Prot
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 5.394e-11
Identity = 34/74 (45.95%), Postives = 50/74 (67.57%), Query Frame = 2
Query:   44 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 253
            ++ GN   D R+ ++E +F +YG++  VD+KSG    FAF+  +D RDAEDA+R  D  EF   GRR+RVE+T+
Sbjct:   11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEF--DGRRIRVEFTR 82          
BLAST of DY305473 vs. ExPASy Swiss-Prot
Match: RBM4_RABIT (RNA-binding protein 4 OS=Oryctolagus cuniculus GN=RBM4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.394e-11
Identity = 47/165 (28.48%), Postives = 80/165 (48.48%), Query Frame = 2
Query:   35 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 529
            M  +F GN   +A + ++  LF +YGKV   D+   + F++++D+  AEDAIR L    +   G  + VE +K++                  ++ S  L V N  P  T  ++L   FE YG +I   I +++AFV  E  EDA  A+   + ++   + + V+
Sbjct:    1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLH--HYKLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144          
BLAST of DY305473 vs. ExPASy Swiss-Prot
Match: RBM4_MOUSE (RNA-binding protein 4 OS=Mus musculus GN=Rbm4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.394e-11
Identity = 47/165 (28.48%), Postives = 80/165 (48.48%), Query Frame = 2
Query:   35 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 529
            M  +F GN   +A + ++  LF +YGKV   D+   + F++++D+  AEDAIR L    +   G  + VE +K++                  ++ S  L V N  P  T  ++L   FE YG +I   I +++AFV  E  EDA  A+   + ++   + + V+
Sbjct:    1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLH--HYKLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144          
BLAST of DY305473 vs. ExPASy Swiss-Prot
Match: RBM4B_RAT (RNA-binding protein 4B OS=Rattus norvegicus GN=Rbm4b PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 5.394e-11
Identity = 47/165 (28.48%), Postives = 80/165 (48.48%), Query Frame = 2
Query:   35 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 529
            M  +F GN   +A + ++  LF +YGKV   D+   + F++++D+  AEDAIR L    +   G  + VE +K++                  ++ S  L V N  P  T  ++L   FE YG +I   I +++AFV  E  EDA  A+   + ++   + + V+
Sbjct:    1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLH--HYKLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144          
The following BLAST results are available for this feature:
BLAST of DY305473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
RSP40_ARATH1.029e-8648.71Arginine/serine-rich-splicing factor RSP40 OS=Arab... [more]
RSP41_ARATH2.993e-8652.35Arginine/serine-rich-splicing factor RSP41 OS=Arab... [more]
RSP31_ARATH2.726e-6349.46Arginine/serine-rich-splicing factor RSP31 OS=Arab... [more]
RBM4_MACFA4.130e-1128.48RNA-binding protein 4 OS=Macaca fascicularis GN=RB... [more]
RBM4_HUMAN4.130e-1128.48RNA-binding protein 4 OS=Homo sapiens GN=RBM4 PE=1... [more]
RBM4_BOVIN4.130e-1128.48RNA-binding protein 4 OS=Bos taurus GN=RBM4 PE=2 S... [more]
RSP3_CAEEL5.394e-1145.95Probable splicing factor, arginine/serine-rich 3 O... [more]
RBM4_RABIT5.394e-1128.48RNA-binding protein 4 OS=Oryctolagus cuniculus GN=... [more]
RBM4_MOUSE5.394e-1128.48RNA-binding protein 4 OS=Mus musculus GN=Rbm4 PE=2... [more]
RBM4B_RAT5.394e-1128.48RNA-binding protein 4B OS=Rattus norvegicus GN=Rbm... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AE04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305473 ID=DY305473; Name=DY305473; organism=Citrus sinensis; type=EST; length=1261bp
TTCACAGCTATCAATCGCCGCTTTCGAAGCTATGATGAGGCCTATCTTCT
GTGGGAACTTTGAGTATGATGCTCGTCAGTCTGATCTGGAGCGGCTTTTC
AGAAGATATGGAAAAGTTGATAGAGTGGATATGAAGTCTGGATTTGCATT
TATCTATATGGATGATGAGAGAGATGCTGAGGATGCAATTCGAGGGCTCG
ATCGAACTGAATTCGGTCGTAAGGGACGCAGACTTCGTGTTGAATGGACA
AAGCATGAACGAGGAATCAGAAGGCCTGGGGGGGGTTCAAGCGCAAGAAG
ACCTTCAACAAATACAAGACCTTCAAAGACCTTGTTTGTCATTAATTTTG
ATCCATATCATACGCGCACCAGGGACTTAGAAAGGCACTTTGAGCCATAT
GGAAAAATAATAAGTGTTAGGATCAGAAGGAATTTTGCATTTGTTCAATA
TGAAGTGCAGGAGGATGCCACCAGAGCATTGGATGCTACAAACATGAGCA
AGTTGACGGATCGAGTTATTTCAGTGGAATATGCAGTTCGTGATGACGAT
GACCGGAGAAATGGACACAGTCCTGATAGAAATCGTGATAGGTCACCAGA
TAGGGGTAGGAGGAGATCTCCAAGTCCCTATAGAAGGGAAAGAGGTAGTC
CTGATTATGGCCGTGGCTCTAGCCGAAGTCCTTACAGGAGAGAGAGGGGT
AGCCCTGATTATGGTCGTGTTAGAAGCCCAAGTCCCTATAGGAGGGATCG
GGGTAGCCCTGATTACGGTCGTAACTCCAGCCGCAGTCCTTACAAGAAAG
AGAGAGCTGCTATTGGTCATGGTCGAGGCCCTAGCCGTAGTCCCTATCGG
AGGGACAGAGGTAGTCCTGAGAATGGGTCTGGATCCCGTCCTATTCCTTA
TCGTAAGGGGGAACCTTTTCCTACCAAGGGTCGGGGCCCCAGCCGCCTTC
CTATGAAAAAAAGAGGGCCTAGTCCTGAAAAGGGTCGGGGAGGCAGCCCA
AGTCCCTTTAAAAAAGAGAGCCTTACCCCTGACAAGGGGCCGGTTCCCCA
TCCAATATTCATGCCCCGGACCCAGGGGAAACCCCCGGTTTTGAAAGGAA
CCGTAAACCCCCTATCATTAAAAAGAATCCCCACCTCTCTCCCCCCCCGC
CGCCAAGAAACGAACATGGGGGTTTCCCCACAAAAGACCCCTCGGGTCTC
CCCAAAAAATAGCAACGACGGCCCCCTTTTTTTACTCCCCCCCCCCCCAC
CCCCCCAACAT
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