EY702533

Overview
NameEY702533
Unique NameEY702533
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702533_ssr32 microsatellite EY702533_ssr32:32..46. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1966 contig Csv1_Contig1966:19..868. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702533 vs. ExPASy Swiss-Prot
Match: IDHC_TOBAC (Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 368.622 bits (945), Expect = 2.421e-101
Identity = 185/231 (80.09%), Postives = 198/231 (85.71%), Query Frame = 3
Query:  150 MAFQKIKGANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEGYNFTGGGGGALSMYNPDEAIRAFGEGSMNMAIRRSGPSILRQKP--YP*EDG*RFQNIFR 836
            M F KIK  NPIVEMDGDEMTRV WKSIKDKLI PFLELDIKYFDLGLP+RDATDDKVTVESAEAT KYNVAIKCATITPDEARVKEF LK MW+SPNGTIRNILNGTVFREPI+CKN+PRL+PGWTKPICIGRHAFGDQYRATDTVIQG GKLKLVFVPEG DEKTE E YNFTG GG ALSMYN DE++R+F E SMNMA ++  P  L  K       DG RF++IF+
Sbjct:    1 MTFDKIKVENPIVEMDGDEMTRVIWKSIKDKLICPFLELDIKYFDLGLPHRDATDDKVTVESAEATQKYNVAIKCATITPDEARVKEFNLKSMWRSPNGTIRNILNGTVFREPIMCKNIPRLVPGWTKPICIGRHAFGDQYRATDTVIQGAGKLKLVFVPEGTDEKTEFEVYNFTGAGGVALSMYNTDESVRSFAEASMNMAYQKKWPLYLSTKNTILKKYDG-RFKDIFQ 230          
BLAST of EY702533 vs. ExPASy Swiss-Prot
Match: IDHC_SOLTU (Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1)

HSP 1 Score: 367.466 bits (942), Expect = 5.394e-101
Identity = 184/231 (79.65%), Postives = 198/231 (85.71%), Query Frame = 3
Query:  150 MAFQKIKGANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEGYNFTGGGGGALSMYNPDEAIRAFGEGSMNMAIRRSGPSILRQKP--YP*EDG*RFQNIFR 836
            MAFQKI   NPIVEMDGDEMTRV WKSIKDKLI PFLELDIKYF LGLP+RDATDDKVTVESAEAT KYNVAIKCATITPDEARVKEF LK MW+SPNGTIRNILNGTVFREPI+CKN+PRL+PGWTKPICIGRHAFGDQYRATDTVI+G GKLKLVFVPEG DEKTE E YNFTG GG ALSMYN DE++R+F E SMNMA ++  P  L  K       DG RF++IF+
Sbjct:    1 MAFQKITVQNPIVEMDGDEMTRVIWKSIKDKLILPFLELDIKYFSLGLPHRDATDDKVTVESAEATQKYNVAIKCATITPDEARVKEFNLKSMWRSPNGTIRNILNGTVFREPIMCKNIPRLVPGWTKPICIGRHAFGDQYRATDTVIKGAGKLKLVFVPEGSDEKTEFEVYNFTGAGGVALSMYNTDESVRSFAEASMNMAFQKKWPLYLSTKNTILKKYDG-RFKDIFQ 230          
BLAST of EY702533 vs. ExPASy Swiss-Prot
Match: IDHP_MEDSA (Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 362.073 bits (928), Expect = 2.266e-99
Identity = 182/235 (77.45%), Postives = 200/235 (85.11%), Query Frame = 3
Query:  138 TKKKMAFQKIKGANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEGYNFTGGGGGALSMYNPDEAIRAFGEGSMNMAIRRSGPSILRQKP--YP*EDG*RFQNIFR 836
            T   M FQKIK ANPIVEMDGDEMTR+ WK IKDKLIFPF+ELDIKYFDLGLP RD T+DKVTVESAEATLKYNVAIKCATITPDEARVKEF LK MW+SPNGTIRNILNGTVFREPIICKN+PRLIPGWTKPICIGRHAFGDQYRATD+VI+GPGKLKLVFVPEG+ E T+LE YNFTG GG AL+MYN DE+IR+F E SM +A+ +  P  L  K       DG RF++IF+
Sbjct:   18 TTATMGFQKIKVANPIVEMDGDEMTRIIWKYIKDKLIFPFVELDIKYFDLGLPYRDETNDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKSMWRSPNGTIRNILNGTVFREPIICKNIPRLIPGWTKPICIGRHAFGDQYRATDSVIKGPGKLKLVFVPEGQGETTDLEVYNFTGEGGVALAMYNTDESIRSFAEASMAVALEKKWPLYLSTKNTILKKYDG-RFKDIFQ 251          
BLAST of EY702533 vs. ExPASy Swiss-Prot
Match: IDHC_SOYBN (Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2)

HSP 1 Score: 355.14 bits (910), Expect = 2.770e-97
Identity = 178/230 (77.39%), Postives = 196/230 (85.22%), Query Frame = 3
Query:  153 AFQKIKGANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEGYNFTGGGGGALSMYNPDEAIRAFGEGSMNMAIRRSGPSILRQKP--YP*EDG*RFQNIFR 836
            AFQKIK ANPIVEMDGDEMTRV WKSIKDKLI PFLELDIKY+DLGLP RD TDDKVT+ESAEATLKYNVAIKCATITPDEARVKEF LK MWKSPNGTIRNILNGTVFREPI+CKN+PRL+PGWTK ICIGRHAFGDQYRATDTVI+G GKLKLVFVPEG+ E+TE E +NFTG GG +L+MYN DE+IR+F E SM  A+ +  P  L  K       DG RF++IF+
Sbjct:    3 AFQKIKVANPIVEMDGDEMTRVIWKSIKDKLILPFLELDIKYYDLGLPYRDETDDKVTIESAEATLKYNVAIKCATITPDEARVKEFGLKSMWKSPNGTIRNILNGTVFREPILCKNIPRLVPGWTKAICIGRHAFGDQYRATDTVIKGAGKLKLVFVPEGQGEETEFEVFNFTGEGGVSLAMYNTDESIRSFAEASMATALEKKWPLYLSTKNTILKKYDG-RFKDIFQ 231          
BLAST of EY702533 vs. ExPASy Swiss-Prot
Match: IDHP_MACFA (Isocitrate dehydrogenase [NADP], mitochondrial OS=Macaca fascicularis GN=IDH2 PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 3.892e-75
Identity = 141/235 (60.00%), Postives = 173/235 (73.62%), Query Frame = 3
Query:  138 TKKKMAFQKIKGANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEGYNFTGGGGGALSMYNPDEAIRAFGEGSMNMAIRRSGPSILRQKP--YP*EDG*RFQNIFR 836
            T++  A ++IK A P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD TDD+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V    G  K+VF P+      E E YNF  GG G + MYN DE+I  F       AI++  P  +  K       DG RF++IF+
Sbjct:   35 TRRHYADKRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDIQLKYFDLGLPNRDQTDDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVADRAGTFKMVFTPKDGSGVKEWEVYNFPAGGVG-MGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDG-RFKDIFQ 267          
BLAST of EY702533 vs. ExPASy Swiss-Prot
Match: IDHP_PIG (Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) OS=Sus scrofa GN=IDH2 PE=1 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.479e-74
Identity = 139/230 (60.43%), Postives = 171/230 (74.35%), Query Frame = 3
Query:  153 AFQKIKGANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEGYNFTGGGGGALSMYNPDEAIRAFGEGSMNMAIRRSGPSILRQKP--YP*EDG*RFQNIFR 836
            A Q+IK A P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V+   G  K+VF P+      + E YNF  GG G + MYN DE+I  F       AI++  P  +  K       DG RF++IF+
Sbjct:    9 ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPAGGVG-MGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDG-RFKDIFQ 236          
BLAST of EY702533 vs. ExPASy Swiss-Prot
Match: IDHP_HUMAN (Isocitrate dehydrogenase [NADP], mitochondrial OS=Homo sapiens GN=IDH2 PE=1 SV=2)

HSP 1 Score: 279.641 bits (714), Expect = 1.479e-74
Identity = 140/234 (59.83%), Postives = 172/234 (73.50%), Query Frame = 3
Query:  141 KKKMAFQKIKGANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEGYNFTGGGGGALSMYNPDEAIRAFGEGSMNMAIRRSGPSILRQKP--YP*EDG*RFQNIFR 836
            ++  A ++IK A P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD TDD+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V    G  K+VF P+      E E YNF  GG G + MYN DE+I  F       AI++  P  +  K       DG RF++IF+
Sbjct:   36 RRHYADKRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDIQLKYFDLGLPNRDQTDDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVADRAGTFKMVFTPKDGSGVKEWEVYNFPAGGVG-MGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDG-RFKDIFQ 267          
BLAST of EY702533 vs. ExPASy Swiss-Prot
Match: IDHP_BOVIN (Isocitrate dehydrogenase [NADP], mitochondrial OS=Bos taurus GN=IDH2 PE=1 SV=2)

HSP 1 Score: 278.87 bits (712), Expect = 2.523e-74
Identity = 139/234 (59.40%), Postives = 173/234 (73.93%), Query Frame = 3
Query:  141 KKKMAFQKIKGANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEGYNFTGGGGGALSMYNPDEAIRAFGEGSMNMAIRRSGPSILRQKP--YP*EDG*RFQNIFR 836
            ++  A ++IK A P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V+   G  K+VF P+      E E YNF  GG G + MYN DE+I  F       AI++  P  +  K       DG RF++IF+
Sbjct:   36 RRHYADKRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKVVFTPKDGSGPKEWEVYNFPAGGVG-MGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDG-RFKDIFQ 267          
BLAST of EY702533 vs. ExPASy Swiss-Prot
Match: IDHP_MOUSE (Isocitrate dehydrogenase [NADP], mitochondrial OS=Mus musculus GN=Idh2 PE=1 SV=3)

HSP 1 Score: 278.485 bits (711), Expect = 3.295e-74
Identity = 139/234 (59.40%), Postives = 172/234 (73.50%), Query Frame = 3
Query:  141 KKKMAFQKIKGANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEGYNFTGGGGGALSMYNPDEAIRAFGEGSMNMAIRRSGPSILRQKP--YP*EDG*RFQNIFR 836
            ++  A ++IK   P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V+   G  KLVF P+      E E YNF  GG G + MYN DE+I  F       +I++  P  L  K       DG RF++IF+
Sbjct:   36 RRHYAEKRIKVEKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKLVFTPKDGSSAKEWEVYNFPAGGVG-MGMYNTDESISGFAHSCFQYSIQKKWPLYLSTKNTILKAYDG-RFKDIFQ 267          
BLAST of EY702533 vs. ExPASy Swiss-Prot
Match: IDHP_RAT (Isocitrate dehydrogenase [NADP], mitochondrial OS=Rattus norvegicus GN=Idh2 PE=1 SV=2)

HSP 1 Score: 277.715 bits (709), Expect = 5.621e-74
Identity = 139/234 (59.40%), Postives = 172/234 (73.50%), Query Frame = 3
Query:  141 KKKMAFQKIKGANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEGYNFTGGGGGALSMYNPDEAIRAFGEGSMNMAIRRSGPSILRQKP--YP*EDG*RFQNIFR 836
            ++  A ++IK   P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V+   G  KLVF P+      E E YNF  GG G + MYN DE+I  F       +I++  P  L  K       DG RF++IF+
Sbjct:   36 RRHYAEKRIKVEKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGMFKLVFTPKDGSGAKEWEVYNFPAGGVG-MGMYNTDESISGFAHSCFQYSIQKKWPLYLSTKNTIMKAYDG-RFKDIFQ 267          
The following BLAST results are available for this feature:
BLAST of EY702533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHC_TOBAC2.421e-10180.09Isocitrate dehydrogenase [NADP] OS=Nicotiana tabac... [more]
IDHC_SOLTU5.394e-10179.65Isocitrate dehydrogenase [NADP] OS=Solanum tuberos... [more]
IDHP_MEDSA2.266e-9977.45Isocitrate dehydrogenase [NADP], chloroplastic (Fr... [more]
IDHC_SOYBN2.770e-9777.39Isocitrate dehydrogenase [NADP] OS=Glycine max GN=... [more]
IDHP_MACFA3.892e-7560.00Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_PIG1.479e-7460.43Isocitrate dehydrogenase [NADP], mitochondrial (Fr... [more]
IDHP_HUMAN1.479e-7459.83Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_BOVIN2.523e-7459.40Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_MOUSE3.295e-7459.40Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_RAT5.621e-7459.40Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-009-B06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702533 ID=EY702533; Name=EY702533; organism=Citrus sinensis; type=EST; length=849bp
CTCGAAAGCAGAAGCATTTCAATTTTCATAGTATTATTATTATTATTGCT
TCTTGCTGCTTCTTTTTGTCCACACGACCTCGGCACCTCCGCTCTGACCC
TATTATCTCTCTCTAGTTGGGAATCAACCGAAACTGAACAAAGAAGAAAA
TGGCTTTTCAGAAGATCAAGGGCGCCAATCCCATCGTCGAAATGGACGGA
GATGAAATGACTCGAGTTTTCTGGAAATCGATTAAGGATAAGCTTATTTT
CCCTTTTCTGGAGTTGGACATAAAGTACTTCGACCTTGGCCTTCCGAATC
GTGATGCAACTGATGACAAAGTTACCGTTGAAAGTGCAGAAGCCACTCTC
AAGTACAATGTAGCGATCAAGTGTGCTACTATTACTCCAGATGAAGCTCG
TGTTAAGGAATTTGTCTTGAAACAGATGTGGAAGAGTCCAAATGGGACAA
TCAGGAATATTTTGAATGGCACTGTTTTCAGAGAACCAATCATTTGCAAA
AATGTCCCTCGGCTTATTCCAGGCTGGACAAAGCCCATATGCATTGGCAG
GCATGCTTTTGGTGATCAATATCGAGCAACTGATACAGTTATTCAAGGAC
CTGGCAAACTTAAATTGGTGTTTGTACCAGAGGGAAAAGATGAGAAGACA
GAGTTAGAGGGTTACAACTTTACCGGGGGAGGGGGAGGTGCATTGTCCAT
GTATAACCCTGATGAGGCCATCCGAGCCTTTGGTGAGGGTTCTATGAACA
TGGCTATCAGAAGAAGTGGCCCCTCTATCTTAAGACAAAAACCCTATCCT
TAAGAAGATGGATGAAGATTCCAGAACATTTTCAGAGGGTTTGGGCGAA
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