EY671274

Overview
NameEY671274
Unique NameEY671274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY671274 vs. ExPASy Swiss-Prot
Match: U497C_VITVI (UPF0497 membrane protein 12 OS=Vitis vinifera GN=GSVIVT00013502001 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.528e-20
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 2
Query:  365 MSYLGVGVSPGNVPVYHGTLMKVVDRRIRLVKLVLRCVICGLAGLAAVLVGTDTQ 529
            MSYLGVGVSPGNVPVYHGT +KVVDRR+RL +LVLRCVICGL  LAAVLVGTDTQ
Sbjct:    1 MSYLGVGVSPGNVPVYHGTNLKVVDRRVRLAELVLRCVICGLGILAAVLVGTDTQ 55          

HSP 2 Score: 21.9422 bits (45), Expect = 1.528e-20
Identity = 10/15 (66.67%), Postives = 10/15 (66.67%), Query Frame = 3
Query:  546 ISKKAKLNDMKLLGF 590
            I KKAK  DMK L F
Sbjct:   62 IQKKAKFTDMKALVF 76          
BLAST of EY671274 vs. ExPASy Swiss-Prot
Match: U497E_RICCO (UPF0497 membrane protein 14 OS=Ricinus communis GN=RCOM_0864260 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.661e-19
Identity = 44/55 (80.00%), Postives = 51/55 (92.73%), Query Frame = 2
Query:  365 MSYLGVGVSPGNVPVYHGTLMKVVDRRIRLVKLVLRCVICGLAGLAAVLVGTDTQ 529
            MSYLGVGVSPGNVPVYHG+ +KV+D+R+RL +LVLRC+ICGL  LAAVLVGTDTQ
Sbjct:    1 MSYLGVGVSPGNVPVYHGSNLKVIDKRVRLAELVLRCLICGLGVLAAVLVGTDTQ 55          

HSP 2 Score: 20.7866 bits (42), Expect = 4.661e-19
Identity = 9/15 (60.00%), Postives = 10/15 (66.67%), Query Frame = 3
Query:  546 ISKKAKLNDMKLLGF 590
            I KKA+  DMK L F
Sbjct:   62 IQKKARFTDMKALVF 76          
BLAST of EY671274 vs. ExPASy Swiss-Prot
Match: U4975_POPTR (UPF0497 membrane protein 5 OS=Populus trichocarpa GN=POPTRDRAFT_575900 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.883e-19
Identity = 46/55 (83.64%), Postives = 49/55 (89.09%), Query Frame = 2
Query:  365 MSYLGVGVSPGNVPVYHGTLMKVVDRRIRLVKLVLRCVICGLAGLAAVLVGTDTQ 529
            MSYLGVGVSPGNVPVYHGT  KV+DRR+RL +LVLRCVIC L  LAAVLVGTDTQ
Sbjct:    1 MSYLGVGVSPGNVPVYHGTNSKVIDRRVRLAELVLRCVICCLGVLAAVLVGTDTQ 55          

HSP 2 Score: 20.7866 bits (42), Expect = 7.883e-19
Identity = 9/15 (60.00%), Postives = 10/15 (66.67%), Query Frame = 3
Query:  546 ISKKAKLNDMKLLGF 590
            I KKA+  DMK L F
Sbjct:   62 IQKKARFTDMKALVF 76          
BLAST of EY671274 vs. ExPASy Swiss-Prot
Match: U4978_ARATH (UPF0497 membrane protein At2g35760 OS=Arabidopsis thaliana GN=At2g35760 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 5.584e-11
Identity = 32/55 (58.18%), Postives = 44/55 (80.00%), Query Frame = 2
Query:  365 MSYLGVGVSPGNVPVYHGTLMKVVDRRIRLVKLVLRCVICGLAGLAAVLVGTDTQ 529
            MSYLGVGVSPGNV     T MK++DR++R+ +L+LRC++C LA +AA+L+ TD Q
Sbjct:    1 MSYLGVGVSPGNVSG-STTKMKLIDRKVRVTELILRCLVCVLALVAAILIATDVQ 54          

HSP 2 Score: 21.557 bits (44), Expect = 5.584e-11
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 3
Query:  543 LISKKAKLNDMKLL 584
            +I KKAK  DMK L
Sbjct:   60 MIQKKAKFTDMKAL 73          
The following BLAST results are available for this feature:
BLAST of EY671274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
U497C_VITVI1.528e-2087.27UPF0497 membrane protein 12 OS=Vitis vinifera GN=G... [more]
U497E_RICCO4.661e-1980.00UPF0497 membrane protein 14 OS=Ricinus communis GN... [more]
U4975_POPTR7.883e-1983.64UPF0497 membrane protein 5 OS=Populus trichocarpa ... [more]
U4978_ARATH5.584e-1158.18UPF0497 membrane protein At2g35760 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-098-C10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY671274 ID=EY671274; Name=EY671274; organism=Citrus sinensis; type=EST; length=815bp
AAAAAGAGTTAAAATTTTTAGTCTCAAGTTTTCTCTTTCATATTTAATAC
TCCTTTGCTGTAATTCAGAGGCGCAGTGCCCTTTGTCTGTAGGAGGCGTA
GAGCTACCAGGTCCTGTCTTTACCACTTGGCACTCTCACAGCCTATTCAT
TCTTGTACAGGCATAGCAGTGCTGTATTTTTTTAATATTCAATGAGAAAA
ATTATTTTCTTGGGTGCCTATTTAAGAAGTGGAACGTGGTGGTTGATGTT
GGGTAAAGGTTAGGATATTTTTCTGGATTTGAGAGCTGTGTCCTGAACTC
TTCTATTCTCCTTCTGTTCAGATTTCTTCCTTTAAGTGTTAAATCTTTGG
AAGAAAAAAAAAAAATGAGTTACTTGGGTGTTGGTGTTAGTCCAGGGAAT
GTGCCAGTGTATCATGGCACCTTAATGAAGGTTGTTGATAGGAGAATAAG
GCTTGTAAAGTTGGTTTTGAGATGTGTGATCTGTGGTTTAGCGGGTCTTG
CTGCTGTTCTTGTCGGGACTGATACCCAAGTCAAGAAATCTTCTCATTTC
AAAAAAAGCAAAGTTAAACGACATGAAACTCTTGGGTTTTGGGGGCATAA
AGGGAAATAGCTGGCCCCTCCTCTTACGGAAGGGGCGCGCTCGACCGATC
ACACATCCAAAGCAACCTTGATTCTACCCGACCCCAACACCGGGGCGTTT
ATCTCTGGGCCCCGCTCATGGGGCCTCCTGACACTCACTCCACGCGGAGT
GGTTTTCCCAACCATCCAGCTTGGGCGACCGGGCACCCCACACAACACTT
CGGCCACAATCCTTA
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