DY257694
|
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY257694 vs. ExPASy Swiss-Prot
Match: RL4_PRUAR (60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1) HSP 1 Score: 201.445 bits (511), Expect = 1.076e-71 Identity = 95/112 (84.82%), Postives = 102/112 (91.07%), Query Frame = 3
Query: 237 EGDMAADASSTVPMPEVKKASNRPDIVGYLHSNNTKNSRQPYADSKKAGHQTSAESWGTGRAVTRIPRVPGGGTHRAGQGAFGNM*RGGRMFAPTKIWRRWHRKINVNQKRY 572
EGDMA D + TV +P+V KAS RPDIV ++HSN +KNSRQPYA SKKAGHQTSAESWGTGRAV+RIPRVPGGGTHRAGQGAFGNM RGGRMFAPTKIWRRWHRKINVNQKRY
Sbjct: 18 EGDMATDQTQTVALPDVMKASIRPDIVTFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRY 129 HSP 2 Score: 91.6633 bits (226), Expect = 1.076e-71 Identity = 46/63 (73.02%), Postives = 52/63 (82.54%), Query Frame = 1
Query: 619 MARGHKTETVPEMPLDVSDSAQSEEKTSAALKVLKQNGAYAEAEKAKDSPGTPPGKGKMRKRR 807
+ARGHK ETVPE+PL VSDS + E+TSAALKVLKQ GAY++AEKAKDS PGKGKMR RR
Sbjct: 145 LARGHKIETVPELPLVVSDSIEGVEETSAALKVLKQIGAYSDAEKAKDSHSIRPGKGKMRNRR 207
BLAST of DY257694 vs. ExPASy Swiss-Prot
Match: RL4A_ARATH (60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 1.988e-67 Identity = 85/112 (75.89%), Postives = 97/112 (86.61%), Query Frame = 3
Query: 237 EGDMAADASSTVPMPEVKKASNRPDIVGYLHSNNTKNSRQPYADSKKAGHQTSAESWGTGRAVTRIPRVPGGGTHRAGQGAFGNM*RGGRMFAPTKIWRRWHRKINVNQKRY 572
+GDM+ D SSTV +P+V A RPDIV ++H+ + NSRQPYA SKKAGHQTSAESWGTGRAV+RIPRVPGGGTHRAGQ AFGNM RGGRMFAPTKIWRRWHR++NVN KR+
Sbjct: 16 DGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRH 127 HSP 2 Score: 93.9745 bits (232), Expect = 1.988e-67 Identity = 48/63 (76.19%), Postives = 53/63 (84.13%), Query Frame = 1
Query: 619 MARGHKTETVPEMPLDVSDSAQSEEKTSAALKVLKQNGAYAEAEKAKDSPGTPPGKGKMRKRR 807
MARGHK E VPEMPL VSDSA++ EKTSAA+KVLKQ GAY +AEKAK+S G PGKGKMR RR
Sbjct: 143 MARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRR 205
BLAST of DY257694 vs. ExPASy Swiss-Prot
Match: RL4B_ARATH (60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=1 SV=2) HSP 1 Score: 184.111 bits (466), Expect = 2.592e-67 Identity = 84/112 (75.00%), Postives = 97/112 (86.61%), Query Frame = 3
Query: 237 EGDMAADASSTVPMPEVKKASNRPDIVGYLHSNNTKNSRQPYADSKKAGHQTSAESWGTGRAVTRIPRVPGGGTHRAGQGAFGNM*RGGRMFAPTKIWRRWHRKINVNQKRY 572
+GDM+ D S+TV +P+V A RPDIV ++H+ + NSRQPYA SKKAGHQTSAESWGTGRAV+RIPRVPGGGTHRAGQ AFGNM RGGRMFAPTKIWRRWHR++NVN KR+
Sbjct: 17 DGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRH 128 HSP 2 Score: 94.3597 bits (233), Expect = 2.592e-67 Identity = 55/91 (60.44%), Postives = 63/91 (69.23%), Query Frame = 1
Query: 619 MARGHKTETVPEMPLDVSDSAQSEEKTSAALKVLKQNGAYAEAEKAKDSPGTPPGKGKMRKRR*QFPKGTRMTTTQPKGAKHSQGH*EHPG 891
MARGHK E VPEMPL VSDSA++ EKTSAA+KVLKQ GAY +AEKAK+S G PGKGKMR RR KG + +GAK + PG
Sbjct: 144 MARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGP-LVVFGTEGAKIVKAFRNLPG 233
BLAST of DY257694 vs. ExPASy Swiss-Prot
Match: RL4B_XENLA (60S ribosomal protein L4-B (Fragment) OS=Xenopus laevis GN=rpl4-B PE=2 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 1.712e-50 Identity = 78/105 (74.29%), Postives = 86/105 (81.90%), Query Frame = 3
Query: 258 ASSTVPMPEVKKASNRPDIVGYLHSNNTKNSRQPYADSKKAGHQTSAESWGTGRAVTRIPRVPGGGTHRAGQGAFGNM*RGGRMFAPTKIWRRWHRKINVNQKRY 572
+ V MP V KA RPDIV ++H+N KN+RQPYA SK AGHQTSAESWGTGRAV RIPRV GGGTHR+GQGAFGNM RGGRMFAPTK WRRWHR++N QKRY
Sbjct: 17 SGKNVTMPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRY 121 HSP 2 Score: 54.6842 bits (130), Expect = 1.712e-50 Identity = 27/63 (42.86%), Postives = 40/63 (63.49%), Query Frame = 1
Query: 619 MARGHKTETVPEMPLDVSDSAQSEEKTSAALKVLKQNGAYAEAEKAKDSPGTPPGKGKMRKRR 807
M++GH+ E +PE+PL V D +S +KT A+ +LK+ A+ + +K S GKGKMR RR
Sbjct: 137 MSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRR 199
BLAST of DY257694 vs. ExPASy Swiss-Prot
Match: RL4A_XENLA (60S ribosomal protein L4-A OS=Xenopus laevis GN=rpl4-A PE=2 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 3.791e-50 Identity = 77/105 (73.33%), Postives = 86/105 (81.90%), Query Frame = 3
Query: 258 ASSTVPMPEVKKASNRPDIVGYLHSNNTKNSRQPYADSKKAGHQTSAESWGTGRAVTRIPRVPGGGTHRAGQGAFGNM*RGGRMFAPTKIWRRWHRKINVNQKRY 572
+ V MP V +A RPDIV ++H+N KN+RQPYA SK AGHQTSAESWGTGRAV RIPRV GGGTHR+GQGAFGNM RGGRMFAPTK WRRWHR++N QKRY
Sbjct: 22 SGKNVTMPAVFRAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRY 126 HSP 2 Score: 54.6842 bits (130), Expect = 3.791e-50 Identity = 27/63 (42.86%), Postives = 40/63 (63.49%), Query Frame = 1
Query: 619 MARGHKTETVPEMPLDVSDSAQSEEKTSAALKVLKQNGAYAEAEKAKDSPGTPPGKGKMRKRR 807
M++GH+ E +PE+PL V D +S +KT A+ +LK+ A+ + +K S GKGKMR RR
Sbjct: 142 MSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRR 204
BLAST of DY257694 vs. ExPASy Swiss-Prot
Match: RL4_URECA (60S ribosomal protein L4 OS=Urechis caupo GN=RPL4 PE=2 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 6.443e-50 Identity = 75/110 (68.18%), Postives = 86/110 (78.18%), Query Frame = 3
Query: 243 DMAADASSTVPMPEVKKASNRPDIVGYLHSNNTKNSRQPYADSKKAGHQTSAESWGTGRAVTRIPRVPGGGTHRAGQGAFGNM*RGGRMFAPTKIWRRWHRKINVNQKRY 572
D A + S V +P V +A RPDIV ++H KN RQPYA S+KAGHQTSAESWGTGRAV RIPRV GGGTHR+GQGAFGNM RG RMFAPTK WRRWHR++N Q+R+
Sbjct: 12 DKGAASESNVTLPAVFRAPIRPDIVNFVHFELKKNGRQPYAVSQKAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGRRMFAPTKTWRRWHRRVNTTQRRH 121 HSP 2 Score: 59.6918 bits (143), Expect = 6.443e-50 Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1
Query: 619 MARGHKTETVPEMPLDVSDSAQSEEKTSAALKVLKQNGAYAEAEKAKDSPGTPPGKGKMRKRR 807
M++GH E +PE+PL VSDS +S +KT A+ VL++ A+ + EK K+S GKGK+R RR
Sbjct: 137 MSKGHCIEQIPEVPLVVSDSVESIKKTKEAVVVLRRLKAWPDVEKVKNSRRFRAGKGKLRNRR 199
BLAST of DY257694 vs. ExPASy Swiss-Prot
Match: RL4_RAT (60S ribosomal protein L4 OS=Rattus norvegicus GN=Rpl4 PE=1 SV=3) HSP 1 Score: 164.851 bits (416), Expect = 8.390e-50 Identity = 76/105 (72.38%), Postives = 86/105 (81.90%), Query Frame = 3
Query: 258 ASSTVPMPEVKKASNRPDIVGYLHSNNTKNSRQPYADSKKAGHQTSAESWGTGRAVTRIPRVPGGGTHRAGQGAFGNM*RGGRMFAPTKIWRRWHRKINVNQKRY 572
+ V +P V KA RPDIV ++H+N KN+RQPYA S+ AGHQTSAESWGTGRAV RIPRV GGGTHR+GQGAFGNM RGGRMFAPTK WRRWHR++N QKRY
Sbjct: 18 SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRY 122 HSP 2 Score: 55.0694 bits (131), Expect = 8.390e-50 Identity = 28/63 (44.44%), Postives = 40/63 (63.49%), Query Frame = 1
Query: 619 MARGHKTETVPEMPLDVSDSAQSEEKTSAALKVLKQNGAYAEAEKAKDSPGTPPGKGKMRKRR 807
M++GH E VPE+PL V D +S +KT A+++LK+ A+ + +K S GKGKMR RR
Sbjct: 138 MSKGHCVEEVPELPLVVEDKVESYKKTKEAVQLLKKLKAWNDIKKVYASQRMRAGKGKMRNRR 200
BLAST of DY257694 vs. ExPASy Swiss-Prot
Match: RL4_MOUSE (60S ribosomal protein L4 OS=Mus musculus GN=Rpl4 PE=1 SV=3) HSP 1 Score: 164.851 bits (416), Expect = 8.391e-50 Identity = 76/105 (72.38%), Postives = 86/105 (81.90%), Query Frame = 3
Query: 258 ASSTVPMPEVKKASNRPDIVGYLHSNNTKNSRQPYADSKKAGHQTSAESWGTGRAVTRIPRVPGGGTHRAGQGAFGNM*RGGRMFAPTKIWRRWHRKINVNQKRY 572
+ V +P V KA RPDIV ++H+N KN+RQPYA S+ AGHQTSAESWGTGRAV RIPRV GGGTHR+GQGAFGNM RGGRMFAPTK WRRWHR++N QKRY
Sbjct: 18 SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRY 122 HSP 2 Score: 55.0694 bits (131), Expect = 8.391e-50 Identity = 27/63 (42.86%), Postives = 40/63 (63.49%), Query Frame = 1
Query: 619 MARGHKTETVPEMPLDVSDSAQSEEKTSAALKVLKQNGAYAEAEKAKDSPGTPPGKGKMRKRR 807
M++GH+ E VPE+PL V D + +KT A+++LK+ A+ + +K S GKGKMR RR
Sbjct: 138 MSKGHRIEEVPELPLVVEDKVEGYKKTKEAVQLLKKLKAWNDIKKVYASQRMRAGKGKMRNRR 200
BLAST of DY257694 vs. ExPASy Swiss-Prot
Match: RL4_HUMAN (60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5) HSP 1 Score: 164.851 bits (416), Expect = 1.858e-49 Identity = 76/105 (72.38%), Postives = 86/105 (81.90%), Query Frame = 3
Query: 258 ASSTVPMPEVKKASNRPDIVGYLHSNNTKNSRQPYADSKKAGHQTSAESWGTGRAVTRIPRVPGGGTHRAGQGAFGNM*RGGRMFAPTKIWRRWHRKINVNQKRY 572
+ V +P V KA RPDIV ++H+N KN+RQPYA S+ AGHQTSAESWGTGRAV RIPRV GGGTHR+GQGAFGNM RGGRMFAPTK WRRWHR++N QKRY
Sbjct: 18 SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRY 122 HSP 2 Score: 53.9138 bits (128), Expect = 1.858e-49 Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 1
Query: 619 MARGHKTETVPEMPLDVSDSAQSEEKTSAALKVLKQNGAYAEAEKAKDSPGTPPGKGKMRKRR 807
M++GH+ E VPE+PL V D + +KT A+ +LK+ A+ + +K S GKGKMR RR
Sbjct: 138 MSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRR 200
BLAST of DY257694 vs. ExPASy Swiss-Prot
Match: RL4_CANFA (60S ribosomal protein L4 OS=Canis familiaris GN=RPL4 PE=1 SV=2) HSP 1 Score: 164.851 bits (416), Expect = 1.858e-49 Identity = 76/105 (72.38%), Postives = 86/105 (81.90%), Query Frame = 3
Query: 258 ASSTVPMPEVKKASNRPDIVGYLHSNNTKNSRQPYADSKKAGHQTSAESWGTGRAVTRIPRVPGGGTHRAGQGAFGNM*RGGRMFAPTKIWRRWHRKINVNQKRY 572
+ V +P V KA RPDIV ++H+N KN+RQPYA S+ AGHQTSAESWGTGRAV RIPRV GGGTHR+GQGAFGNM RGGRMFAPTK WRRWHR++N QKRY
Sbjct: 18 SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRY 122 HSP 2 Score: 53.9138 bits (128), Expect = 1.858e-49 Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 1
Query: 619 MARGHKTETVPEMPLDVSDSAQSEEKTSAALKVLKQNGAYAEAEKAKDSPGTPPGKGKMRKRR 807
M++GH+ E VPE+PL V D + +KT A+ +LK+ A+ + +K S GKGKMR RR
Sbjct: 138 MSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRR 200 The following BLAST results are available for this feature:
BLAST of DY257694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 43
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY257694 ID=DY257694; Name=DY257694; organism=Citrus sinensis; type=EST; length=1386bpback to top |