DY257681

Overview
NameDY257681
Unique NameDY257681
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1245
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12320 contig Csv1_Contig12320:602..1846. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257681 vs. ExPASy Swiss-Prot
Match: ASK21_ARATH (SKP1-like protein 21 OS=Arabidopsis thaliana GN=ASK21 PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 6.586e-70
Identity = 155/274 (56.57%), Postives = 173/274 (63.14%), Query Frame = 1
Query:    1 QVPGRSNKERKMFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPRIRLLNRLYAXXXXXXXXXXXXXXXXXXXXHVDERSVDDLLSFINGGNGDSKGIKTXXXXXXXXXXXDQLKDSSTNNLNGNHKEFNSLHSAFHNGGLNDIAVSTPHKTSKLQCSTAVTCSPKMEFXXXXXXXXXXPAMKEELDREVEDFARRLNSDWPQRMQEILSLGQDRRLVQVSMNSNCSSRRCT 822
            QVPGRSNKERK++DEKFIRMDTK+LCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRE FHLPDDLTEEEKLEPL N  DDPRIRLLNRLYA                    HVDERSVDDLLSFING   D K +KT           +Q   SS        K+ ++L S   +  + D   S     S L        +PK EF          PA+KE LDREVEDFARRLNS W      +LS+GQ+R+ V  S+N N +SRR T
Sbjct:   80 QVPGRSNKERKVYDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTMDDPRIRLLNRLYA-KKRKELKEREKLKSVEVEEHVDERSVDDLLSFING--RDPKVVKTSKSKKKNKKRKEQKNGSSNGTCEALEKDLHNLDSKSQSAEIVDNTASCLGDVSNLPSMEDDIFTPKTEFEDGYIDDEIDPALKELLDREVEDFARRLNSSW------VLSIGQERQPVNFSINGNGTSRRLT 344          
BLAST of DY257681 vs. ExPASy Swiss-Prot
Match: ASK20_ARATH (SKP1-like protein 20 OS=Arabidopsis thaliana GN=ASK20 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 1.737e-62
Identity = 150/278 (53.96%), Postives = 175/278 (62.95%), Query Frame = 1
Query:    1 QVPGRSNKERKMFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPRIRLLNRLYAXXXXXXXXXXXXXXXXXXXXHVDERSVDDLLSFINGGNGDSKGIKTXXXXXXXXXXXDQLKDSSTNNLNGNHKEFNSLHSAFHNGGLNDIAVSTPHKTSKLQCSTAVTCSPKMEFXXXXXXXXXXPAMKEELDREVEDFARRLNSDWPQRMQEILSLGQDRRLVQVSMNSNCSSRRCTSLDS 834
            Q+PGRSNKERK +DE+FIRMDTK+LCELTSAADSLQLKPLVDLTSRALARIIEGK PEEIRE FHLPDDLTEEEKLEPL N  DDPRIRLLNRLYA                    HVDERSVDDLLSFING   D K +K            DQ K  S+NN+  + KE + L S      + +I  S     + L     ++ +P              PAM+E LDREVEDFA+RLNS+W      + SLG++RR V  S+N N ++RR T + S
Sbjct:   80 QLPGRSNKERKTYDERFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKNPEEIREIFHLPDDLTEEEKLEPLKNSMDDPRIRLLNRLYA-KKRKELKERERLKNVEVEEHVDERSVDDLLSFING--RDHKAVKMSKGKKKKKKKKDQ-KIVSSNNI--HDKESHDLRS--KQQCVEEIGSSMREVPNLLSAEDDIS-TPNAGSEDEDIDDEIDPAMRELLDREVEDFAQRLNSNW------VRSLGKERRPVHFSINGNGTTRRHTGMVS 342          
BLAST of DY257681 vs. ExPASy Swiss-Prot
Match: SKP1B_ARATH (SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.304e-11
Identity = 34/74 (45.95%), Postives = 54/74 (72.97%), Query Frame = 1
Query:   10 GRSNKERKMFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 231
            G S+++ K +D +FI++D   L +L  AA+ L +K L+DLT + +A +I+GKTPEEIR+TF++ +D T EE+ E
Sbjct:   88 GSSDEDLKTWDSEFIKVDQGTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEE 161          
BLAST of DY257681 vs. ExPASy Swiss-Prot
Match: SKP1_XENLA (S-phase kinase-associated protein 1 OS=Xenopus laevis GN=skp1 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 9.047e-11
Identity = 33/76 (43.42%), Postives = 56/76 (73.68%), Query Frame = 1
Query:   19 NKERK-----MFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 231
            NKE++     ++D++F+++D   L EL  AA+ L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+ +
Sbjct:   77 NKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQ 152          
BLAST of DY257681 vs. ExPASy Swiss-Prot
Match: SKP1_RAT (S-phase kinase-associated protein 1 OS=Rattus norvegicus GN=Skp1 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 9.047e-11
Identity = 33/76 (43.42%), Postives = 56/76 (73.68%), Query Frame = 1
Query:   19 NKERK-----MFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 231
            NKE++     ++D++F+++D   L EL  AA+ L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+ +
Sbjct:   77 NKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQ 152          
BLAST of DY257681 vs. ExPASy Swiss-Prot
Match: SKP1_PONAB (S-phase kinase-associated protein 1 OS=Pongo abelii GN=SKP1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.047e-11
Identity = 33/76 (43.42%), Postives = 56/76 (73.68%), Query Frame = 1
Query:   19 NKERK-----MFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 231
            NKE++     ++D++F+++D   L EL  AA+ L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+ +
Sbjct:   77 NKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQ 152          
BLAST of DY257681 vs. ExPASy Swiss-Prot
Match: SKP1_MOUSE (S-phase kinase-associated protein 1 OS=Mus musculus GN=Skp1 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 9.047e-11
Identity = 33/76 (43.42%), Postives = 56/76 (73.68%), Query Frame = 1
Query:   19 NKERK-----MFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 231
            NKE++     ++D++F+++D   L EL  AA+ L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+ +
Sbjct:   77 NKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQ 152          
BLAST of DY257681 vs. ExPASy Swiss-Prot
Match: SKP1_MACFA (S-phase kinase-associated protein 1 OS=Macaca fascicularis GN=SKP1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.047e-11
Identity = 33/76 (43.42%), Postives = 56/76 (73.68%), Query Frame = 1
Query:   19 NKERK-----MFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 231
            NKE++     ++D++F+++D   L EL  AA+ L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+ +
Sbjct:   77 NKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQ 152          
BLAST of DY257681 vs. ExPASy Swiss-Prot
Match: SKP1_HUMAN (S-phase kinase-associated protein 1 OS=Homo sapiens GN=SKP1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 9.047e-11
Identity = 33/76 (43.42%), Postives = 56/76 (73.68%), Query Frame = 1
Query:   19 NKERK-----MFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 231
            NKE++     ++D++F+++D   L EL  AA+ L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+ +
Sbjct:   77 NKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQ 152          
BLAST of DY257681 vs. ExPASy Swiss-Prot
Match: SKP1_CHICK (S-phase kinase-associated protein 1 OS=Gallus gallus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.047e-11
Identity = 33/76 (43.42%), Postives = 56/76 (73.68%), Query Frame = 1
Query:   19 NKERK-----MFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 231
            NKE++     ++D++F+++D   L EL  AA+ L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+ +
Sbjct:   77 NKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQ 152          
The following BLAST results are available for this feature:
BLAST of DY257681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ASK21_ARATH6.586e-7056.57SKP1-like protein 21 OS=Arabidopsis thaliana GN=AS... [more]
ASK20_ARATH1.737e-6253.96SKP1-like protein 20 OS=Arabidopsis thaliana GN=AS... [more]
SKP1B_ARATH5.304e-1145.95SKP1-like protein 1B OS=Arabidopsis thaliana GN=SK... [more]
SKP1_XENLA9.047e-1143.42S-phase kinase-associated protein 1 OS=Xenopus lae... [more]
SKP1_RAT9.047e-1143.42S-phase kinase-associated protein 1 OS=Rattus norv... [more]
SKP1_PONAB9.047e-1143.42S-phase kinase-associated protein 1 OS=Pongo abeli... [more]
SKP1_MOUSE9.047e-1143.42S-phase kinase-associated protein 1 OS=Mus musculu... [more]
SKP1_MACFA9.047e-1143.42S-phase kinase-associated protein 1 OS=Macaca fasc... [more]
SKP1_HUMAN9.047e-1143.42S-phase kinase-associated protein 1 OS=Homo sapien... [more]
SKP1_CHICK9.047e-1143.42S-phase kinase-associated protein 1 OS=Gallus gall... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3DD11FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257681 ID=DY257681; Name=DY257681; organism=Citrus sinensis; type=EST; length=1245bp
CAAGTACCAGGCCGCTCAAATAAGGAACGTAAAATGTTTGATGAGAAGTT
TATCCGTATGGATACTAAAAAGTTGTGTGAGCTTACTTCTGCTGCTGACA
GCCTCCAATTAAAGCCTTTGGTGGATCTCACTAGTCGTGCGCTTGCTCGA
ATTATTGAAGGAAAAACTCCTGAGGAAATACGCGAGACATTTCATTTACC
AGATGATCTCACGGAGGAAGAGAAGTTGGAACCCTTAAATAATGTAACTG
ATGATCCGCGTATTCGGCTTTTGAATCGATTATATGCGAGGAAGAGGAAA
GAGTTAAAAGAGAGGGAGAAACTTAAGAATGTTGAGGTCGAGGAGGAGCA
TGTGGATGAGCGCTCAGTTGATGATCTATTGTCATTTATAAATGGGGGGA
ATGGAGATTCAAAGGGGATTAAAACAAACAAGAACAAAAAGAAAAACCGA
AGAAGAAAAGATCAACTAAAGGACTCTTCTACAAACAATTTAAATGGAAA
CCACAAGGAGTTCAACTCTCTCCATTCAGCTTTCCATAATGGCGGGCTTA
ATGATATTGCGGTGTCCACTCCCCATAAGACTTCAAAATTGCAATGTTCT
ACTGCTGTTACCTGTTCACCAAAGATGGAATTTGATGATGGTGAAATTGA
TGATGATCTAGATCCTGCGATGAAGGAGGAGCTTGACAGGGAAGTAGAGG
ACTTTGCTCGGCGATTGAATTCAGATTGGCCTCAAAGGATGCAAGAGATT
TTATCATTGGGTCAAGATAGGAGACTTGTACAAGTATCAATGAACAGCAA
CTGTTCCAGTCGTAGATGTACAAGTTTGGACAGTAGATAACGCAATCAAA
GATCAATAATTTATATGGCAGAATTGTCGGCTACTTTTAATGCTTCAAGC
ACGTGGCAGCACTGACTTTGCTGCTGAAAAATGTTAGTTACTTGTGAAGT
TATTTGTTTCTTTTTTCCCCCTCCAAAATGTTAATTTTCCGTTTTGAGCA
TCCTTGGAACTTCCAAAAAAAAATTGGGCAAAAAAAAAAAAAAAAAAAAA
AAACCCCAACTTTCCTTGGTACCAAAGTTGGGGAATTTATAAAAAAAAGA
CATTTTGCTTTTATCAATTTTGTTTGCCACCCAAAAAAAGGGGTCCCCAT
TATCCCCAAACAAAAAAAAAAAAATACCTTTTTTTTTTTTTTTCCCCCCC
CCCCCCCCGCCCCCTGAAAAAATTTCCCCCCCCCTCCCATAAATG
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