DY257627

Overview
NameDY257627
Unique NameDY257627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length520
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12693 contig Csv1_Contig12693:241..760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY257627 vs. ExPASy Swiss-Prot
Match: RL321_ARATH (60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 2.171e-53
Identity = 99/111 (89.19%), Postives = 107/111 (96.40%), Query Frame = 2 
Query:    2 SDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 334
            SDR+I+VKE+WRRPKGIDSRVRRKFKG  LMPN+GYGSDKKTRHYLPNGFKKFVVHN +ELELLMMHNRTYCAEIAHNVSTKKRK IVERA+QLDVVVTN+LARLRSQE+E
Sbjct:   23 SDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVVTNRLARLRSQEDE 133
[Close]
BLAST of DY257627 vs. ExPASy Swiss-Prot
Match: RL322_ARATH (60S ribosomal protein L32-2 OS=Arabidopsis thaliana GN=RPL32B PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.407e-52
Identity = 96/111 (86.49%), Postives = 106/111 (95.50%), Query Frame = 2 
Query:    2 SDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 334
            SDR+I+VKE+WRRPKGIDSRVRRKFKG  LMPN+GYGSDKKTRHYLPNGFKKF+VHN +ELELLMMHNRTYCAEIAHN+STKKRK IVERA+QLDVVV+NKL RLRSQE+E
Sbjct:   23 SDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGRLRSQEDE 133
[Close]
BLAST of DY257627 vs. ExPASy Swiss-Prot
Match: RL32_RAT (60S ribosomal protein L32 OS=Rattus norvegicus GN=Rpl32 PE=1 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 1.460e-41
Identity = 78/111 (70.27%), Postives = 97/111 (87.39%), Query Frame = 2 
Query:    2 SDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 334
            SDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   25 SDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of DY257627 vs. ExPASy Swiss-Prot
Match: RL32_PIG (60S ribosomal protein L32 OS=Sus scrofa GN=RPL32 PE=2 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 1.460e-41
Identity = 78/111 (70.27%), Postives = 97/111 (87.39%), Query Frame = 2 
Query:    2 SDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 334
            SDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   25 SDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of DY257627 vs. ExPASy Swiss-Prot
Match: RL32_MOUSE (60S ribosomal protein L32 OS=Mus musculus GN=Rpl32 PE=2 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 1.460e-41
Identity = 78/111 (70.27%), Postives = 97/111 (87.39%), Query Frame = 2 
Query:    2 SDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 334
            SDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   25 SDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of DY257627 vs. ExPASy Swiss-Prot
Match: RL32_MACFA (60S ribosomal protein L32 OS=Macaca fascicularis GN=RPL32 PE=2 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 1.460e-41
Identity = 78/111 (70.27%), Postives = 97/111 (87.39%), Query Frame = 2 
Query:    2 SDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 334
            SDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   25 SDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of DY257627 vs. ExPASy Swiss-Prot
Match: RL32_HUMAN (60S ribosomal protein L32 OS=Homo sapiens GN=RPL32 PE=1 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 1.460e-41
Identity = 78/111 (70.27%), Postives = 97/111 (87.39%), Query Frame = 2 
Query:    2 SDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 334
            SDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   25 SDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of DY257627 vs. ExPASy Swiss-Prot
Match: RL32_SPOFR (60S ribosomal protein L32 OS=Spodoptera frugiperda GN=RpL32 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.907e-41
Identity = 81/111 (72.97%), Postives = 92/111 (82.88%), Query Frame = 2 
Query:    2 SDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 334
            SDR   +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KKTRH LPNGF+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL + VTN  ARLRSQE E
Sbjct:   24 SDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKTIVERAQQLSIRVTNSAARLRSQENE 134
[Close]
BLAST of DY257627 vs. ExPASy Swiss-Prot
Match: RL32_BOVIN (60S ribosomal protein L32 OS=Bos taurus GN=RPL32 PE=2 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 1.907e-41
Identity = 77/111 (69.37%), Postives = 97/111 (87.39%), Query Frame = 2 
Query:    2 SDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 334
            SDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + +TN  ARLRS+E E
Sbjct:   25 SDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRITNPNARLRSEENE 135
[Close]
BLAST of DY257627 vs. ExPASy Swiss-Prot
Match: RL32_ICTPU (60S ribosomal protein L32 OS=Ictalurus punctatus GN=rpl32 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.108e-40
Identity = 77/111 (69.37%), Postives = 95/111 (85.59%), Query Frame = 2 
Query:    2 SDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 334
            SDR + ++ NWR+P+GID+RVR  FKG +LMPNIGYGS+KKT+H LP+GFKKF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   25 SDRYVKIRRNWRKPRGIDNRVRSGFKGQMLMPNIGYGSNKKTKHMLPSGFKKFLVHNVKELEVLLMSNKSYCAEIAHNVSSKNRKVIVERAAQLAIKVTNPNARLRSEENE 135
The following BLAST results are available for this feature:
BLAST of DY257627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RL321_ARATH2.171e-5389.1960S ribosomal protein L32-1 OS=Arabidopsis thalian... [more]
RL322_ARATH1.407e-5286.4960S ribosomal protein L32-2 OS=Arabidopsis thalian... [more]
RL32_RAT1.460e-4170.2760S ribosomal protein L32 OS=Rattus norvegicus GN=... [more]
RL32_PIG1.460e-4170.2760S ribosomal protein L32 OS=Sus scrofa GN=RPL32 P... [more]
RL32_MOUSE1.460e-4170.2760S ribosomal protein L32 OS=Mus musculus GN=Rpl32... [more]
RL32_MACFA1.460e-4170.2760S ribosomal protein L32 OS=Macaca fascicularis G... [more]
RL32_HUMAN1.460e-4170.2760S ribosomal protein L32 OS=Homo sapiens GN=RPL32... [more]
RL32_SPOFR1.907e-4172.9760S ribosomal protein L32 OS=Spodoptera frugiperda... [more]
RL32_BOVIN1.907e-4169.3760S ribosomal protein L32 OS=Bos taurus GN=RPL32 P... [more]
RL32_ICTPU2.108e-4069.3760S ribosomal protein L32 OS=Ictalurus punctatus G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3CC06FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257627 ID=DY257627; Name=DY257627; organism=Citrus sinensis; type=EST; length=520bp
GAGTGACAGGAAGATATCAGTGAAGGAAAATTGGCGAAGGCCGAAGGGTA
TTGATTCACGTGTCAGGAGAAAGTTCAAAGGATGTGTTCTGATGCCCAAT
ATTGGCTACGGCTCGGACAAGAAAACACGCCACTATCTGCCCAATGGATT
CAAGAAGTTTGTTGTGCACAATGTCAATGAACTGGAACTCTTGATGATGC
ACAACAGGACTTATTGTGCTGAGATAGCCCACAACGTATCAACCAAGAAG
AGAAAGGAGATTGTCGAGCGTGCTGCACAATTGGATGTTGTGGTCACCAA
CAAATTGGCCAGGTTGCGCAGCCAGGAGGAGGAGTAAAAATTGGTTTCTA
TATTTTATGTTAGTGTTTGCTTTTGGCCAAATGTTTCCTAGGTTGTCTTT
GGAATGGATGAACATTTCCAGGGTTGAATTATGATGTATTTTCTATTTTT
GTCACCTGAATGATATTTTGAATTTGTTGTTTTTTGCGGAGCATGATTAA
TGTTATGTCAACTTAGGAGT
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